mRNA_H-paniculata_contig14178.2536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: D8LCV6_ECTSI (Alanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV6_ECTSI) HSP 1 Score: 322 bits (826), Expect = 2.240e-99 Identity = 180/250 (72.00%), Postives = 214/250 (85.60%), Query Frame = 1 Query: 4 AEDPDREEWASCSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSF 753 A+DP REEWA+ SVEFCGGTHV NTREAEAFVI EE+AVAKG+RRITA+TG+ AK A A GE L++RA EV+ +KG +LE A+++FRRDVD ATLSA VKG+LRA+GD LLKRVAAE+KAAAA A++ GV+AA KAAK+A + G++ ++M+V IGA+SKAVKRVLD V+K APGLSFMGFSAEGPGA+GKLLVFS V G AAE GL ADEWLR++L ACGGRGGGRPTSAQGQA A EMDK +AAA +F Sbjct: 867 AKDPSREEWATSSVEFCGGTHVGNTREAEAFVITEETAVAKGVRRITAITGSAAKEAVAAGEVLKLRAEEVSSLKGGELEGAVASFRRDVDGATLSAGVKGRLRAQGDKLLKRVAAESKAAAAAAAQSGVDAAVKAAKQAVEEGKTWVVMDVAIGADSKAVKRVLDGVSKVAPGLSFMGFSAEGPGATGKLLVFSAVAGAAAEGGLKADEWLRSSLAACGGRGGGRPTSAQGQAPDAGEMDKGMAAAIAF 1116
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A835ZLN6_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLN6_9STRA) HSP 1 Score: 185 bits (469), Expect = 8.440e-50 Identity = 120/250 (48.00%), Postives = 153/250 (61.20%), Query Frame = 1 Query: 10 DPDREEWASCSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759 DP R +WA SVEFCGGTH++NT +A AF + +E AVAKG+RRITA+TGA A A A G KL+ A A + A+L A R+ +D AT+SAA+K KLR E +AL +R + G G L+ EV IG +SKAVKRVLDAV AAP L+FMG S GA G+LL F++ A +GL AD W+ AA+ ACGGRGGG+P++AQGQA S + A A+K+FAA Sbjct: 726 DPARADWARSSVEFCGGTHLANTADAAAFALVQEEAVAKGVRRITAVTGAEAAAALAEGAKLQADVAAAAKLADAELXXXAPALRQALDAATISAALKAKLRGEVEALQRRAXXXXXXXXXXXXDRGXXXXXXXXXXXXXXGARSLVTEVAIGGDSKAVKRVLDAVQAAAPELAFMGLS-PAAGADGRLLCFALCGDAARAAGLGADAWVAAAMAACGGRGGGKPSAAQGQAPSVEGLQAAADASKAFAA 974
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S1FYS4_9STRA (Alanine--tRNA ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYS4_9STRA) HSP 1 Score: 182 bits (461), Expect = 1.090e-48 Identity = 111/224 (49.55%), Postives = 147/224 (65.62%), Query Frame = 1 Query: 40 SVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGAD--LETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQA 705 SVEFCGGTH++NT EAEAFV+ EE+AVAKG+RRITA+TGA A RA G L R E G+D LE + R+D+D +SA +K LR +AL K+ AA KA A+ + +NA G+ +A +G+ VL+ +V IGA+ KA +V++AV AP ++FMG S E + GK+L F++V E GL ADEW+R ALEA GGRGGG+P +AQGQA Sbjct: 766 SVEFCGGTHLANTAEAEAFVLLEETAVAKGVRRITAVTGASALRAIEEGTALETRVGEAESFAGSDTDLEALAVSLRKDIDAREISAPLKADLRGRIEALQKKAAAAKKALLAMRVDRALNAVGEQILDARTQGQRVLVTKVDIGADGKAANKVVEAVRSLAPEMAFMGVSEEEEDSGGKVLCFTVVPEGMVEEGLRADEWVRNALEASGGRGGGKPNAAQGQA 989
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S4NG01_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NG01_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.610e-48 Identity = 112/243 (46.09%), Postives = 152/243 (62.55%), Query Frame = 1 Query: 40 SVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGM---KGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759 SVEFCGGTH+SNT+EAEAF + EESAVAKGIRRITA+T A A G+K R A + + +DL+ + R+D+D A SA +K LR+ +++ K+ K A A ++ +N +EAA G++ L++EV IGA+SKA ++VL+A K AP ++FMG S E G+ GKL F+ V AE G ADEW+R+AL CGGRGGG+P SAQGQA ++ + A FAA Sbjct: 132 SVEFCGGTHLSNTKEAEAFALVEESAVAKGIRRITAVTKGAALEAIEEGKKFEERVASLEQLDPSSTSDLDKQAGSLRKDLDAAYTSAPLKATLRSRIESIQKKAVDAKKRALAQRVDKVLNVVTAQIEEAAGAGKTALVLEVDIGADSKASQKVLNAAKKLAPDMAFMGLSEEENGSGGKLACFAAVPEAMAEGGFRADEWVRSALGVCGGRGGGKPDSAQGQAKECDDVGAVVKQADLFAA 374
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S4AXE9_9STRA (Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXE9_9STRA) HSP 1 Score: 176 bits (447), Expect = 8.260e-47 Identity = 113/243 (46.50%), Postives = 154/243 (63.37%), Query Frame = 1 Query: 37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGAD--LETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759 CS+EFCGGTH+SNT EAEAFV+ EE+AVAKGIRRITA+T AK A G+K+ A++ + L+ A R+DVD +SA +K LR + + K+V KAA A +N + + A L++ V IGA+SKA ++VL+AV K AP ++FMG S E G+ GKL+ F++V + GL ADEW+R LE CGGRGGG+P SAQGQA +++D +AA++SFAA Sbjct: 749 CSIEFCGGTHMSNTAEAEAFVLVEETAVAKGIRRITAVTRDTAKEAIEEGKKIEGLVADLEALSAETEGLDKKAGAARKDVDAVFISATLKADLRNRIEGVQKKVNEVKKAALAQRVNLILNDIKEKVEAAISTDAKTLVLNVDIGADSKASQQVLNAVKKIAPDMAFMGLSEEEQGSGGKLMAFAVVPESLVDCGLKADEWVRGTLEVCGGRGGGKPGSAQGQAPECSDVDAVLAASESFAA 991
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: K0SS72_THAOC (Alanine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS72_THAOC) HSP 1 Score: 172 bits (435), Expect = 1.660e-45 Identity = 113/243 (46.50%), Postives = 155/243 (63.79%), Query Frame = 1 Query: 37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKG---ADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIV-NGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSF 753 CSVEFCGGTH+SNT EAEAFV+ EE+AVAKGIRRITALT A RA G KL R A + ++ DL+ A R+DVD+A SAA+K +LRA + + K+ K A ++ +N + A G+ L++ + IGA+SKA ++V+ AV K AP L+FMG S E G+ GK+L F+IV GV ++GL A+EWL+ L+ GGRGGG+P SAQGQA +++ + A+S+ Sbjct: 518 CSVEFCGGTHISNTAEAEAFVLTEETAVAKGIRRITALTREAAVRAIEEGSKLTDRTAALEAIRADDTPDLDKQAGALRKDVDSAEFSAALKAELRARIEQVQKKGIEAKKRLLAGRVDKCLNTVKADVETALAEGKRTLVLNLDIGADSKASQKVIKAVQKIAPDLAFMGISEEEAGSGGKILCFAIVPEGVTDDTGLKANEWLKDVLDFAGGRGGGKPGSAQGQAPECDDVEAVMEKAQSY 760
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S2E064_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E064_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.800e-45 Identity = 108/235 (45.96%), Postives = 144/235 (61.28%), Query Frame = 1 Query: 58 GTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLR--VRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFA 756 GTH+SNT EAEAFV+ EE+AVAKGIRRITA+T A A A G K V +AE +L+ A R+D+D A +SA +K +LRA +A+ K+ A KAA A + +N + A + VL++ V I A+SKA ++V+ A AP ++FMG S E G+ GKL+ F+IV E G AD W+RAALE+CGGRGGG+P SAQGQA +++D I A FA Sbjct: 1 GTHISNTAEAEAFVLVEETAVAKGIRRITAVTKKAAAGAIAEGAKFEELVASAEELSADTPELDKKAGAMRKDLDAAFMSAPLKAELRARIEAIQKKGIASKKAALAARVDNVLNTVKEDISAAVAENKRVLVLNVDICADSKAAQKVMKAAKSLAPDMAFMGLSEEEAGSGGKLMCFAIVPDSLVEEGFKADVWVRAALESCGGRGGGKPGSAQGQAQQCSDVDAVINVANEFA 235
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A448Z8F1_9STRA (Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8F1_9STRA) HSP 1 Score: 171 bits (433), Expect = 3.270e-45 Identity = 110/243 (45.27%), Postives = 150/243 (61.73%), Query Frame = 1 Query: 37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGM--KGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759 CS+EFCGGTHV+NT EAEAFV+ EE+AVAKGIRRITA+T AK A G+K+ E+ + K L+ A R+DVD A +SA +K LR + AA A + + ++A + L++ V I A+SKA ++VL+AV K AP ++FMG S E G+ GKL+ F++V + GL ADEW+R LE CGGRGGGRP +AQGQA +++D +AA++SFAA Sbjct: 527 CSIEFCGGTHVANTAEAEAFVLVEETAVAKGIRRITAVTRDTAKEAIEEGKKIESMVVELEALDDKTEGLDKKAGAARKDVDAAFISATLKADLRNRIEGXXXXXXXXXXAALAARVDLVLKDVRTQVEDALSKDARTLVLNVDINADSKASQQVLNAVKKIAPDMAFMGLSEEEEGSGGKLMAFAVVPESLVDCGLKADEWVRGTLEVCGGRGGGRPGNAQGQAQECSDVDAVVAASESFAA 769
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: A0A7S1YSQ0_9STRA (Alanine--tRNA ligase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YSQ0_9STRA) HSP 1 Score: 171 bits (434), Expect = 4.780e-45 Identity = 112/241 (46.47%), Postives = 151/241 (62.66%), Query Frame = 1 Query: 40 SVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLR--VRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIVNGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFA 756 SVEFCGGTHVSNT EAEAFV+ EE+AVAKGIRRIT +T A A A G+K V +AE +L+ A R+D+D A +SA +K +LRA +A+ K+ A KAA A ++ + + A G+ L++ V I A+SKA ++V++ V AP ++FMG S E G+ GKL+ F++V G AD W+RAALE+CGGRGGG+P SAQGQA +++D IA A FA Sbjct: 785 SVEFCGGTHVSNTAEAEAFVLVEETAVAKGIRRITGVTKGAAIEAIAEGKKFVEIVSSAEELSADTPELDKKAGAMRKDLDAAFMSAPLKAELRARIEAIQKKGIAAKKAALAGRVDQVLKTVKEDISAAVAEGKRALVLNVDICADSKAAQKVMNDVKSVAPDMAFMGLSEEEAGSGGKLMCFAVVPDSLVADGFKADAWVRAALESCGGRGGGKPGSAQGQAQECSDVDAVIAVANEFA 1025
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Match: B8LD66_THAPS (Alanine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LD66_THAPS) HSP 1 Score: 169 bits (428), Expect = 2.760e-44 Identity = 114/242 (47.11%), Postives = 157/242 (64.88%), Query Frame = 1 Query: 37 CSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALTGAPAKRAAANGEKLRVRAAEVAGMKGADLETALSAFRRDVDTATLSAAVKGKLRAEGDALLKRVAAEAKAAAALASEEGVNAAGKAAKEAADRGESVLIMEVMIGANSKAVKRVLDAVAKAAPGLSFMGFSAEGPGASGKLLVFSIV-NGVAAESGLNADEWLRAALEACGGRGGGRPTSAQGQAASAAEMDKAIAAAKSFAA 759 CSVEFCGGTH+SNT EAEAFV+ EE+AVAKGIRRITALT R AA +K E+ DL+ A R+D+D A LSAA+K +LRA + + K+ K A ++ +N + ++A G+ L++ + IGA+SKA ++V+ AV K AP ++FMG S E PG+ GK+L F+IV + + E+GL A+EW + L++ GGRGGG+P SAQGQA S ++ IA A+SFAA Sbjct: 692 CSVEFCGGTHISNTAEAEAFVLTEETAVAKGIRRITALT-----RGAAFEQKTAALE-EIDADNSPDLDKQAGALRKDLDAAELSAALKSELRARIEGVQKKGIEAKKRLLAGRVDKCLNGVTEEVEKALIDGKKSLVLNLDIGADSKASQKVIKAVQKLAPEMAFMGISEEEPGSGGKILCFAIVPDSLMKETGLKANEWTKEVLDSVGGRGGGKPGSAQGQAPSCEDVGAVIAKAESFAA 927 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14178.2536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14178.2536.1 >prot_H-paniculata_contig14178.2536.1 ID=prot_H-paniculata_contig14178.2536.1|Name=mRNA_H-paniculata_contig14178.2536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp QAEDPDREEWASCSVEFCGGTHVSNTREAEAFVIAEESAVAKGIRRITALback to top mRNA from alignment at H-paniculata_contig14178:416..5274- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14178.2536.1 ID=mRNA_H-paniculata_contig14178.2536.1|Name=mRNA_H-paniculata_contig14178.2536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4859bp|location=Sequence derived from alignment at H-paniculata_contig14178:416..5274- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14178:416..5274- >mRNA_H-paniculata_contig14178.2536.1 ID=mRNA_H-paniculata_contig14178.2536.1|Name=mRNA_H-paniculata_contig14178.2536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig14178:416..5274- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |