mRNA_H-paniculata_contig14177.2535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14177.2535.1
Unique NamemRNA_H-paniculata_contig14177.2535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14177.2535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14177contigH-paniculata_contig14177:781..4286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size407
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929126.871967-CDS-H-paniculata_contig14177:780..8211622929126.871967-CDS-H-paniculata_contig14177:780..821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14177 781..821 +
1691480741.2477186-CDS-H-paniculata_contig14177:780..8211691480741.2477186-CDS-H-paniculata_contig14177:780..821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14177 781..821 +
1622929126.8876529-CDS-H-paniculata_contig14177:3921..42851622929126.8876529-CDS-H-paniculata_contig14177:3921..4285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14177 3922..4285 +
1691480741.2591236-CDS-H-paniculata_contig14177:3921..42851691480741.2591236-CDS-H-paniculata_contig14177:3921..4285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14177 3922..4285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14177.2535.1prot_H-paniculata_contig14177.2535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14177 781..4285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14177.2535.1

>prot_H-paniculata_contig14177.2535.1 ID=prot_H-paniculata_contig14177.2535.1|Name=mRNA_H-paniculata_contig14177.2535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
GKIREKGSCSVGRRVFAWRGSGTGYLSTWKDELGNLLRDKPLVSQRCVWY
FSELNTKSADMNPVTSDLVDVQPEFAPLVDEPTIDGAKFELHKNSKWESS
WTGWPKPLKLDVREEPSISTLPRHRDRRVERQEEV
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mRNA from alignment at H-paniculata_contig14177:781..4286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14177.2535.1 ID=mRNA_H-paniculata_contig14177.2535.1|Name=mRNA_H-paniculata_contig14177.2535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3506bp|location=Sequence derived from alignment at H-paniculata_contig14177:781..4286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGATACGCGAAAAAGGATCATGCTCCGTTGGCCGCAGGTAGGAACA
CATGCACCAGATTGTTTTTGTTGAGAATATCTAATGATACACCAGGAGGT
AGCTGCAAAGGCTGGCGCTGGTAGTTGTTAAAGCTGACCGAGCAGGCCCG
CTATGCCGAGCATACAAACAGTTAATGATGGTTGAAAAGTGTCGCTCGTG
GGCTAGAGAAGAAGATAGGAGAGCAAGAGGTATGTTACAAGGAGTGAGAG
ATGGTGGGGCGCACCCCATGGTGTGTCCGCTCTCTTCTAAGCTACGTACA
CGTATCCTCCGCGTACGAGTGCATCGTTCGTACCGTTCCACGAGTTACAG
GAACTTTCAAAGAACTGTCGGATCAACCTCTTCTACTAGTAGATTTCCCA
ATTTGTGGAAAATAGACAAGTGACTACGAAACGTCAAGAATTGCGCCGCC
ATTTTGTCATTACTCCTTAGAATATGTAATTCCTATCCATCCTCGTGTTC
CAAGTCGCAGCAACACTTACTTCCAATGTTGGCAATGATGTATACAGTGC
TACACTAGTGATAATCGACAGACAGGTCATCATAAGGCTCTGTTTCAAAC
ACACTGTTATACTACGGCTGCGTAAAGCTCAACACACCCCATGGTACGAA
GTATTGACTACATAGGCATACTTGTCTATTTCTTAACAGTTTTTCACCAC
TGTTTGTTTCCACATGAGCGAGGCGCGTTCGTGGTCACCTGCCTCTTTTT
CGTTGGGCGGATTGAGTCGAGTCACATGTTATTTAAAGTTTGTTGGTCAT
AATTTGACCCTTTAGGAACCTTACCTCCTAACCGCTTACTAATAGATCCG
CCAACTACCAGTCGTGAATGACGACGAATACGTTCCCAAAATGCTTCACC
AGCTCTAAATAGACAGCTGGTGACCGTATCTCAGGTGCAGAAGGGCGTCG
TGTGTTTGCCGTGTGGAGTTCTTTTCTCCTGAGTTTAGTGTAATACAGCG
AGAATGAGGAAACGCCGGGCTAGTTCGTAAAGATCAAGTAAAGAACAGCA
AACAGACCCTGCGCAGCCAATGGGAAGATTATAGCCTCCTAAAGGGCTAA
CATGTCTCAACATTTCCTTTGATGGGGGTAATATCGGATTCCGAACAGCC
CTGCGCTATTATAGGACATTAAAGTTTGTAGGTTACAGTCGTTTTCTGAA
CGGTATTGGTTTGGTGTAAAACTGCGGTTGTTTTTTAGCCCCCCCCGTCG
CCCGCGTTCATGTTTATGCTGATTTTCTACTGTTGGGGATACGTGTATTT
AGCCGTGAGTGGGAGCTGCTTGACCCCGGCGTGCCGGGGGGACATGTACT
TTCTCAATTGAGCACTACGAATTTACCCTGCAGGGGTGCTTTTGGCAAAA
ATATCAAGGTATAAAATACTGCGGTAATACACCGTATTCGGTATTTGGTC
GGTTTTTGGGAAATCCTCGACGTACTGTGTTGCGTTACCATGCACGGTAA
AGCGAAATTGGTTGCAATTACCGTACGGTGAGTGTACCACATGTGCTTTT
TTTGTAGTTTTTAATCGCGGATTAATTCACTTATTGAGACCCCCGGTCCG
AAGCTGGGATTCCGATACTTTGGTTCTTGCTTGATGTTATCGCATGGTGG
CAAAGATACCAAAAATATTTCCATGATCGCGGGTCTGAGACGACCAAATT
GACCACGTAAGTTACCGTGGGTCTGAATTAAACTCGTCTTGGTGCTTTCC
TCGTAGAGTAGAATCAAGTGACGTGATTCATCGGCTCGTATGGGTTACTT
TTACGAAACTCGCTTTTTGTGGTCGCCAGGCATGAGCGTAAGCATGAGTT
CAGCGTGTTGTTGACTGTAATGCTGTTTTCTCTGCGTAGCGTTTTTTAGT
TACTTTTCAATAAGTATGCTTTCAACAATTTGTTGTGCTTTTTCTTTTAT
TTGCATATACTAATCACCCCGGAAAAAAATGGCGATTGTACTTTGCTCAA
GAGTTGCGTGATGTGGTTTGGTGTTGTGTGGTGTGCCATTTTGCCTTCTA
ACTTTGAACTTGTTACTCGGTGCAAGGGACTGTCGGTGCCTGGTGAGTCG
CCTCCTTGTGGAACTCCCCGTATCATACCTTGACTACATACCACGTGGGT
TCTGTGACTGTATCATGCACTTGAGTAACGAAATACGACATATGAGATAC
CGCACCGCATAATACCGAGAAGACAAAATATCGTACCGTACCGCGGGAGG
GGAGAAACAAATATGGTTTATCGCGCAAGTACCGAGAAGTAGATATACCG
TACCGTCCTAGCGATATGTCGAATGTTGTTTACCGGTACCATACCGACAC
CACAATTTACCGTGCTTTAGGCGTGACGTGCGTGAGCACTGCTATGATAT
TGATCACCCAAGTAACACAGTTTTAATATACCTATTAGATCCAATATTTT
AGTAACCCATTGGCGGTTTCTTTCTTGAGTTGCGACCCGACTGTGGGAAC
AAGACCGCTTGCCTTCGTGGACGCATTTTTTTCTCCAACACCTTGGTCCA
ATCACTCAGACCCGCGGTCATGGGATATGTGTCTACCGGGTTGAGCTGTG
CTGCAGACCATGATTATGCTTCATATTCAGTATTTATTCTTCTGCTGGCT
AGAAGAGTGCATGGCTTCACTATGGTTTGTCACGGAAACACCATTGGTTT
TTTTTATCTTAACGAAGAAATGCCCGGCCCTTGGCCGCTCTCGCTCTTCA
CTGAATCCAAGATAAAAAGGCTTGAATCGGGAACAAGAAGAAGTGACCCC
ACTTTCGAACCTGAGACACGCCAACAGCCAACAGTCTAGAATTACTGTAA
TATGTGAAATGAAAGAGGTTTCTGGTTTGGAACCTCTCTTTACATTTTCT
TGTAGTGGAGTATTGCGGGCGATGACACTATATCTTTACGATATGCACCG
CGTTGAATACCAGGATGTGAACCTACCTTAGTTCTGTTGCTTTGGGGCAT
GAAAGGGGATTGCCGTGAGCTTGTCCCTGCTCCTCCACCGCCCCTCCCGC
AGTTGTCTTGATAGACTGTCGCTCAGGCGGTTGGCAACATAACCAAACAA
CATGACACCATTTTTGTGTTCAACAAAATGTATACATCAAGGGTTTTTGC
CTGGAGGGGAAGCGGCACTGGATATCTCAGTACGTGGAAGGATGAACTGG
GCAACTTGCTGCGAGACAAGCCGCTGGTCTCCCAACGCTGTGTGTGGTAC
TTCTCCGAGCTCAACACGAAGTCTGCCGACATGAATCCTGTGACCAGTGA
CCTAGTCGATGTACAACCCGAATTCGCTCCTCTCGTGGATGAACCGACAA
TCGATGGAGCTAAGTTCGAGTTGCACAAGAACAGCAAATGGGAGAGCAGT
TGGACCGGATGGCCTAAGCCCCTGAAGCTCGATGTGCGTGAAGAACCCTC
TATCTCAACCCTTCCACGACATCGTGACCGCCGTGTGGAGCGGCAAGAGG
AAGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14177:781..4286+

>mRNA_H-paniculata_contig14177.2535.1 ID=mRNA_H-paniculata_contig14177.2535.1|Name=mRNA_H-paniculata_contig14177.2535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig14177:781..4286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGATACGCGAAAAAGGATCATGCTCCGTTGGCCGCAGGGGAAGATA
CGCGAAAAAGGATCATGCTCCGTTGGCCGCAGGGTTTTTGCCTGGAGGGG
AAGCGGCACTGGATATCTCAGTACGTGGAAGGATGAACTGGGCAACTTGC
TGCGAGACAAGCCGCTGGTCTCCCAACGCTGTGTGTGGTACTTCTCCGAG
CTCAACACGAAGTCTGCCGACATGAATCCTGTGACCAGTGACCTAGTCGA
TGTACAACCCGAATTCGCTCCTCTCGTGGATGAACCGACAATCGATGGAG
CTAAGTTCGAGTTGCACAAGAACAGCAAATGGGAGAGCAGTTGGACCGGA
TGGCCTAAGCCCCTGAAGCTCGATGTGCGTGAAGAACCCTCTATCTCAAC
CCTTCCACGACATCGTGACCGCCGTGTGGAGCGGCAAGAGGAAGTGGGTT
TTTGCCTGGAGGGGAAGCGGCACTGGATATCTCAGTACGTGGAAGGATGA
ACTGGGCAACTTGCTGCGAGACAAGCCGCTGGTCTCCCAACGCTGTGTGT
GGTACTTCTCCGAGCTCAACACGAAGTCTGCCGACATGAATCCTGTGACC
AGTGACCTAGTCGATGTACAACCCGAATTCGCTCCTCTCGTGGATGAACC
GACAATCGATGGAGCTAAGTTCGAGTTGCACAAGAACAGCAAATGGGAGA
GCAGTTGGACCGGATGGCCTAAGCCCCTGAAGCTCGATGTGCGTGAAGAA
CCCTCTATCTCAACCCTTCCACGACATCGTGACCGCCGTGTGGAGCGGCA
AGAGGAAGTG
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