mRNA_H-paniculata_contig14162.2530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14162.2530.1
Unique NamemRNA_H-paniculata_contig14162.2530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14162.2530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14162contigH-paniculata_contig14162:1313..2175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size270
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.9026268-CDS-H-paniculata_contig14162:1312..13741622929125.9026268-CDS-H-paniculata_contig14162:1312..1374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14162 1313..1374 -
1691480740.996396-CDS-H-paniculata_contig14162:1312..13741691480740.996396-CDS-H-paniculata_contig14162:1312..1374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14162 1313..1374 -
1622929125.9179115-CDS-H-paniculata_contig14162:1967..21751622929125.9179115-CDS-H-paniculata_contig14162:1967..2175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14162 1968..2175 -
1691480741.0044544-CDS-H-paniculata_contig14162:1967..21751691480741.0044544-CDS-H-paniculata_contig14162:1967..2175Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14162 1968..2175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14162.2530.1prot_H-paniculata_contig14162.2530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14162 1313..2175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14162.2530.1

>prot_H-paniculata_contig14162.2530.1 ID=prot_H-paniculata_contig14162.2530.1|Name=mRNA_H-paniculata_contig14162.2530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MQQHVLHPPGTKVILAFLNIASCPSIITYGSTLTPVLKKALIFLSNNLDE
KGTIALALPDMLCDSSHLRALLKEAGLIMESVPLVSHYGN
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mRNA from alignment at H-paniculata_contig14162:1313..2175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14162.2530.1 ID=mRNA_H-paniculata_contig14162.2530.1|Name=mRNA_H-paniculata_contig14162.2530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=863bp|location=Sequence derived from alignment at H-paniculata_contig14162:1313..2175- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCAACATGTACTGCATCCGCCGGGCACAAAGGTCATATTGGCGTT
CTTGAACATCGCGAGCTGTCCTTCAATCATCACCTACGGCTCCACTCTGA
CCCCAGTCCTGAAGAAGGCCTTGATCTTTCTCTCGAACAACTTGGACGAG
AAGGGCACCATCGCCCTGGCTCTTCCTGACATGTTGTGTGACAGCTCACA
TCTGAGAGGTACGTTTGGCGTGATAATGGTGAATCCTTGTACTCATGTTT
TTTTTACATTAAAGTCTTGGTCCTTTGTTTTTGGACTGTATAATGGGTCT
CATCGTCTACCTCGAGTAAAATGCAGTGTGCTATAATAGTACGTTGATCG
GGATTGAGAACCTGTGTGCGTTGACGTGGCGGCTCCTCATATAGCTTCAT
TAAGCCGTGTGCCTTGATGTTGAGTGTGGTGTGTGTACAGCAGCCTCCCC
CCTCCCCACTTTTGTGTTCTATTTTGGGGGCCACACCCCTGGGCACCACT
GCTGTGCCCCCCAAAACATAACCAAAACTCACCACCACCAGCGGCCGTAA
AATACCCCTGCTTATTTGAGGCACCCTCAAGCAGAAACACTCTTGGATTT
TCCGCACATAAGATCATAACCAATTTCGACGTCGGTATGAATGAGAAGCC
GCGATGTCCTAATACAATATTCGTTTGGTTATTGAACAACGAACTGTAGA
CGGTTGCCGTATCTGTAAGTCCCAGTATTTCTAGGCGGTTGATGCCGGCA
CTGCGTAGCGCTCGCTAGTGTATGCTGTACTGCGTTTACCGTGTGTCTCA
GCTTTGCTGAAAGAGGCTGGGCTTATCATGGAGTCCGTGCCTCTCGTCTC
GCATTATGGTAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig14162:1313..2175-

>mRNA_H-paniculata_contig14162.2530.1 ID=mRNA_H-paniculata_contig14162.2530.1|Name=mRNA_H-paniculata_contig14162.2530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig14162:1313..2175- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCAACATGTACTGCATCCGCCGGGCACAAAGGTCATATTGGCGTT
CTTGAACATCGCGAGCTGTCCTTCAATCATCACCTACGGCTCCACTCTGA
CCCCAGTCCTGAAGAAGGCCTTGATCTTTCTCTCGAACAACTTGGACGAG
AAGGGCACCATCGCCCTGGCTCTTCCTGACATGTTGTGTGACAGCTCACA
TCTGAGAGATGCAGCAACATGTACTGCATCCGCCGGGCACAAAGGTCATA
TTGGCGTTCTTGAACATCGCGAGCTGTCCTTCAATCATCACCTACGGCTC
CACTCTGACCCCAGTCCTGAAGAAGGCCTTGATCTTTCTCTCGAACAACT
TGGACGAGAAGGGCACCATCGCCCTGGCTCTTCCTGACATGTTGTGTGAC
AGCTCACATCTGAGAGCTTTGCTGAAAGAGGCTGGGCTTATCATGGAGTC
CGTGCCTCTCGTCTCGCATTATGGTAACCTTTGCTGAAAGAGGCTGGGCT
TATCATGGAGTCCGTGCCTCTCGTCTCGCATTATGGTAAC
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