mRNA_H-paniculata_contig14156.2528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14156.2528.1
Unique NamemRNA_H-paniculata_contig14156.2528.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: A0A6H5JG94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG94_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.120e-32
Identity = 75/188 (39.89%), Postives = 105/188 (55.85%), Query Frame = 1
Query:   10 PEIDHLVSIVGEGVPVDV-TEGCDLTAELRYGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRVSPFGVVVKPTKVRIIHDLTFTQHKKTDS--VNSQTDFKQAPPCELA------LRKILE-----PTSRILLSKMDVKDAIWQIPINANNAKTFGYVIDKFLIIDLRLQFGWRNSPG 531
            P+I+ L++I+  GVPV   T   DL   LRYGNH+SAD H PL+ +++  D++  R L+     A  IP LRVSP GVVV   K R+I+DL+F    +T    +N+ T+    PPC  A      L  ++      P   +L++  DV DA   + IN + A  FGY +   L++DLRL FGW  SPG
Sbjct:   41 PQIEELMTIITGGVPVITETSSTDLERALRYGNHSSADGHLPLLWEKLGNDVRRERCLVLEKTSAHEIPNLRVSPVGVVVTH-KPRVINDLSFNPTDRTTKGGLNADTNADTIPPCLCAGALPGFLTALVSLRAKCPKLHLLMATTDVNDAFRNVRINPDQAHNFGYTLGDLLVVDLRLPFGWTGSPG 227          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: A0A835YZC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.740e-23
Identity = 67/190 (35.26%), Postives = 99/190 (52.11%), Query Frame = 1
Query:   10 PEIDHLVSIVGEGVPVDVTEGCDLTAE--LRYGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSI--PGLRVSPFGVVVK-PTKVRIIHDLTFTQHKKTDSVNSQTDFKQAPPC------ELALRKILE-----PTSRILLSKMDVKDAIWQIPINANNAKTFGYVIDKFLIIDLRLQFGWRNSPG 531
            P +  L+ +V  GVPV V    D  AE  +  GN+    RH P+   +V +D+  GR ++    +A       L ++P  VV +   K R++HDL+   H   +SVN+ T F++AP        E  L +I       P  RIL+SKMDVK A  Q+ ++       GY  +  +++DLRLQFGWR+SPG
Sbjct:   17 PRLQELLDVVAHGVPVSVKRQADFEAEWTVSRGNYPLEPRHVPVFDCKVLEDIALGRCIVMHAAIARMYFSTRLHINPVFVVDEGAAKFRVVHDLSALLHG--ESVNNTTVFEEAPVVGCGHIFEAMLYRIWSLRQAWPRKRILISKMDVKSAFRQLALDVRGP-LLGYRYNDLVVVDLRLQFGWRSSPG 203          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: A0A6A3I0G4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3I0G4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.840e-17
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = 1
Query:   94 RYGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRVSPFGVVVK----PTKVRIIHDLTFTQHKKTDSVNSQTDFKQA---PPCELALRKIL----EPTSRILLSKMDVKDAIWQIPINANNAKTFGYVIDKFLIIDLRLQFGWRNSPG 531
            R GNH + + H P V   + +  K GR L+  L +A     + +SP GVV K    P  +R+I+D +F +    +    ++ F +    PP ++A R        P +RIL+   DV  A   +P++A +A  F +VI ++L+IDL   FGW  SP 
Sbjct:   20 RPGNHGTINDHLPQVWRHIRKGQKEGRYLVVHLRLADQWKEVFISPIGVVAKVDTNPPDIRLINDYSFPEGGAVNDFTDRSHFPEITYNPPGDIARRIFALRRDHPYARILMMVGDVAGAFRHVPVHAEHAHMFAFVIGEYLVIDLSCGFGWCGSPA 176          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: G4YS29_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YS29_PHYSP)

HSP 1 Score: 82.4 bits (202), Expect = 3.380e-15
Identity = 52/155 (33.55%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  103 NHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRVSPFGVVVKP-TKVRIIHDLTFTQHKKTDSVNSQTD------FKQAPPCELALRKILE-----PTSRILLSKMDVKDAIWQIPINANNAKTFGYVIDKFLIIDLRLQFGWRNSPG 531
            NH+S D H   V   + +   +GR L+    +      + +SP GVV K  T +R+I D +F +     S+N  TD       K  PP ++A R+I+E     P  RILL   DV  A   +P++A++A  F +V+ ++L++DL   FGW  SP 
Sbjct:   97 NHSSIDEHLSQVWAHIRKGQADGRYLVVRASLLDQWHDIFLSPIGVVAKDGTDIRVIDDYSFPEGS---SINDFTDRSHLPAIKYNPPADIA-RRIVELRREYPDIRILLMLGDVAGAFRHVPVSADHAHMFAFVLGEYLVVDLACGFGWCGSPA 247          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: A0A2P4XJC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJC0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.320e-15
Identity = 50/158 (31.65%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   91 LRYGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRVSPFGVVVKPT----KVRIIHDLTFTQHKKTDSVNSQTDFKQA---PPCELALRKIL----EPTSRILLSKMDVKDAIWQIPINANNAKTFGYVIDKFLIIDLRLQFGWRNSPG 531
            +R  NHT+   + P V   + +  K+GR L+    +A     + +SP GVV K       VR+I+D +F      +    ++ F +    PP  +A R        P  RIL+   DV  A   +PINAN+A  F +++ +FL+ID+   FGW  SP 
Sbjct:  122 VRPPNHTTLSTYLPQVWRHIRKGQKDGRYLVLHASLADKWGEVFISPLGVVAKSGGDGHDVRLINDYSFPDKAAVNDYTDRSHFPEITYNPPGHIANRIFTLRRDHPNVRILMMLGDVAGAFRHVPINANHAHMFAFIVGEFLVIDMSCGFGWCGSPA 279          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: A0A836CKZ7_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.150e-12
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  217 LRVSPFGVVVK-PTKVRIIHDLTFTQHKKTDSVNSQTDFKQAPPCEL------------ALRKILEPTSRILLSKMDVKDAIWQIPINANNAKTFGYVIDKFLIIDLRLQFGWRNSPG 531
            L ++P  VV +     R++HDL+   H   +SVN+ T F++AP  E             +LR+   P  RIL+SKMDVK A  Q+ ++       GY  +  +++DLRLQFGWR+SPG
Sbjct:    7 LHINPVFVVDEGAANFRVVHDLSALLHG--ESVNNTTVFEEAPVVECGHIFEAMLYRIWSLRQAW-PRKRILISKMDVKSAFRQLALDVRGP-LLGYRYNDLVVVDLRLQFGWRSSPG 120          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: A0A6A3HDV2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HDV2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.960e-11
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  223 VSPFGVVVKP-TKVRIIHDLTFTQHKKTDSVNSQTDFKQA---PPCELALRKILE-----PTSRILLSKMDVKDAIWQIPINANNAKTFGYVIDKFLIIDLRLQFGWRNSPG 531
            +SP GVV K  T +R+I+D +       +  +++T+       PP ++A R+I       P +RILL   DV  A W +PI+A++A  F +V++++L++DL   FGW  SP 
Sbjct:    6 ISPIGVVEKDGTDIRVINDYSCPAGASINDYSNRTNLPVITYNPPGDIA-RRIFTLRQDYPDARILLMLGDVAGAFWHVPISADDAHMFAFVLEEYLVVDLACGFGWCGSPA 116          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: K0S3Z5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3Z5_THAOC)

HSP 1 Score: 60.8 bits (146), Expect = 1.350e-7
Identity = 43/159 (27.04%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   85 AELRYGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRVSPFGVVV-KPTKVRIIHDLTFTQ-HKKTDSVNSQTDFKQAPPCELALRKIL--EPT-SRILLSKMDVKDAIWQIPINANNAKTFGYVI------DKFLIIDLRLQFGWRNSP 528
            A L  G H S D +   + ++    +  G+ ++ P      +PGLR+SP GVV  +  + R I D +F++ +K+T  + +    +     +  LR+IL  +P    + L K+D+ D  ++I +N ++    G         +K +   L L  GW+NSP
Sbjct:  858 AALERGPHKSCDDYHEFLAEEFTDMINKGQWVVLPASAVKHMPGLRISPPGVVPQRDRRPRWIVDYSFSEVNKETLPLAAMEAMQFGHALDRILREILLADPALGPVQLMKVDISDGFYRINLNIDDIPKLGVAFPTKPGEEKLVAFPLVLPMGWKNSP 1016          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: K0RL26_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL26_THAOC)

HSP 1 Score: 58.9 bits (141), Expect = 5.990e-7
Identity = 45/161 (27.95%), Postives = 77/161 (47.83%), Query Frame = 1
Query:   79 LTAELRYGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRVSPFGVVVK-PTKVRIIHDLTFTQHKKTDSVNSQTDFKQ-APPCELALRKIL--EPT-SRILLSKMDVKDAIWQIPINANNAKTFGYVI------DKFLIIDLRLQFGWRNSP 528
            ++  L  G H S   +   + D+    ++ G+ +I P   A  +PGLR+SP GVV +   + R+I D TF+         +  D  Q     +  LR+I+  +P    + L K+D+ D  ++I ++A +    G V       ++ + I L L  GW+NSP
Sbjct:   81 ISQALARGAHQSCMAYVDFLCDEFVDMIQKGQFVILPASEALKLPGLRISPPGVVPQHERRPRMIVDYTFSGVNDETLPLAPVDAMQFGHALDRILREIMMADPAYGPVNLIKVDLSDGFYRIGLSAGDMPKLGLVFPTKPGEEQLVAIPLVLPMGWKNSP 241          
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Match: K0S7V5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S7V5_THAOC)

HSP 1 Score: 58.2 bits (139), Expect = 9.850e-7
Identity = 41/157 (26.11%), Postives = 75/157 (47.77%), Query Frame = 1
Query:   91 LRYGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRVSPFGVVVKP-TKVRIIHDLTFTQ-HKKTDSVNSQTDFKQAPPCELALRKILEPTSR---ILLSKMDVKDAIWQIPINANNAKTFGYVI------DKFLIIDLRLQFGWRNSP 528
            L+ G H S   H   + ++    +  G+ ++ P     ++PGLRVSP GVV +   + R I D +F+  + +T  + +    +     +  LR+IL    R   + + K+D+ D  ++I +N ++    G V       ++ +   L L  GW+NSP
Sbjct:  148 LKRGPHQSCKEHIDFLHEEFADMVAKGQWVVLPASEVLNLPGLRVSPPGVVPQEGRRPRTIVDYSFSDVNAETLPLAAMEAMQFGHALDRLLREILLADPRHGPVYMMKVDLSDGFYRICLNIDDIPKLGIVFPSKVPGEQLIAFPLVLPMGWKNSP 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14156.2528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JG94_9PHAE1.120e-3239.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZC0_9STRA7.740e-2335.26Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6A3I0G4_9STRA1.840e-1732.48Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
G4YS29_PHYSP3.380e-1533.55Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A2P4XJC0_9STRA4.320e-1531.65Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A836CKZ7_9STRA1.150e-1238.14Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A6A3HDV2_9STRA4.960e-1134.82Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
K0S3Z5_THAOC1.350e-727.04Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0RL26_THAOC5.990e-727.95Uncharacterized protein n=2 Tax=Thalassiosira ocea... [more]
K0S7V5_THAOC9.850e-726.11Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14156contigH-paniculata_contig14156:4866..5396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue3e-13
Seed eggNOG ortholog67593.Physo133219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein). Source PGD
EggNOG OGs2EEVD@1,2SK6B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.7773693-CDS-H-paniculata_contig14156:4865..53961622929125.7773693-CDS-H-paniculata_contig14156:4865..5396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14156 4866..5396 -
1691480740.9439144-CDS-H-paniculata_contig14156:4865..53961691480740.9439144-CDS-H-paniculata_contig14156:4865..5396Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14156 4866..5396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14156.2528.1prot_H-paniculata_contig14156.2528.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14156 4866..5396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14156.2528.1

>prot_H-paniculata_contig14156.2528.1 ID=prot_H-paniculata_contig14156.2528.1|Name=mRNA_H-paniculata_contig14156.2528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
KQNPEIDHLVSIVGEGVPVDVTEGCDLTAELRYGNHTSADRHTPLVLDQV
HQDLKNGRALIFPLEMATSIPGLRVSPFGVVVKPTKVRIIHDLTFTQHKK
TDSVNSQTDFKQAPPCELALRKILEPTSRILLSKMDVKDAIWQIPINANN
AKTFGYVIDKFLIIDLRLQFGWRNSPG
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mRNA from alignment at H-paniculata_contig14156:4866..5396-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14156.2528.1 ID=mRNA_H-paniculata_contig14156.2528.1|Name=mRNA_H-paniculata_contig14156.2528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig14156:4866..5396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAAATCCGGAGATTGATCATTTAGTATCCATCGTGGGCGAAGGGGT TCCAGTCGACGTAACGGAAGGATGTGACCTAACCGCCGAACTGAGATACG GCAACCATACCAGTGCCGATAGGCATACCCCACTCGTTCTCGACCAAGTA CATCAGGATCTGAAAAACGGTAGAGCACTCATTTTTCCCCTCGAGATGGC AACATCCATTCCTGGACTTCGAGTTTCACCTTTCGGCGTGGTAGTGAAAC CTACCAAAGTCAGAATAATTCACGACCTCACCTTCACCCAACACAAGAAA ACCGACAGCGTAAATAGTCAAACGGACTTCAAACAAGCGCCGCCATGTGA ACTCGCTCTGAGAAAGATATTAGAACCCACCTCACGTATTTTACTGAGCA AAATGGACGTGAAAGACGCCATTTGGCAAATCCCAATCAATGCCAACAAC GCTAAAACATTCGGTTACGTGATTGACAAGTTCCTAATCATTGACCTTCG ACTTCAATTCGGATGGCGCAATAGCCCTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14156:4866..5396-

>mRNA_H-paniculata_contig14156.2528.1 ID=mRNA_H-paniculata_contig14156.2528.1|Name=mRNA_H-paniculata_contig14156.2528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig14156:4866..5396- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAAAATCCGGAGATTGATCATTTAGTATCCATCGTGGGCGAAGGGGT
TCCAGTCGACGTAACGGAAGGATGTGACCTAACCGCCGAACTGAGATACG
GCAACCATACCAGTGCCGATAGGCATACCCCACTCGTTCTCGACCAAGTA
CATCAGGATCTGAAAAACGGTAGAGCACTCATTTTTCCCCTCGAGATGGC
AACATCCATTCCTGGACTTCGAGTTTCACCTTTCGGCGTGGTAGTGAAAC
CTACCAAAGTCAGAATAATTCACGACCTCACCTTCACCCAACACAAGAAA
ACCGACAGCGTAAATAGTCAAACGGACTTCAAACAAGCGCCGCCATGTGA
ACTCGCTCTGAGAAAGATATTAGAACCCACCTCACGTATTTTACTGAGCA
AAATGGACGTGAAAGACGCCATTTGGCAAATCCCAATCAATGCCAACAAC
GCTAAAACATTCGGTTACGTGATTGACAAGTTCCTAATCATTGACCTTCG
ACTTCAATTCGGATGGCGCAATAGCCCTGGGAAACAAAATCCGGAGATTG
ATCATTTAGTATCCATCGTGGGCGAAGGGGTTCCAGTCGACGTAACGGAA
GGATGTGACCTAACCGCCGAACTGAGATACGGCAACCATACCAGTGCCGA
TAGGCATACCCCACTCGTTCTCGACCAAGTACATCAGGATCTGAAAAACG
GTAGAGCACTCATTTTTCCCCTCGAGATGGCAACATCCATTCCTGGACTT
CGAGTTTCACCTTTCGGCGTGGTAGTGAAACCTACCAAAGTCAGAATAAT
TCACGACCTCACCTTCACCCAACACAAGAAAACCGACAGCGTAAATAGTC
AAACGGACTTCAAACAAGCGCCGCCATGTGAACTCGCTCTGAGAAAGATA
TTAGAACCCACCTCACGTATTTTACTGAGCAAAATGGACGTGAAAGACGC
CATTTGGCAAATCCCAATCAATGCCAACAACGCTAAAACATTCGGTTACG
TGATTGACAAGTTCCTAATCATTGACCTTCGACTTCAATTCGGATGGCGC
AATAGCCCTGGG
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