mRNA_H-paniculata_contig1414.2525.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1414.2525.1
Unique NamemRNA_H-paniculata_contig1414.2525.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A8F0K262_9PHAE (Ribosomal protein L6 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K262_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.820e-42
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QALVGVSLSY LKL+LKGIGYRVEKQ K LF KLGYSHPVI  +PEV+EV+ IKN+L FRS HLIVLKNFSL LRRLRFPDSYKGSGV+
Sbjct:   61 QALVGVSLSYSLKLRLKGIGYRVEKQDKKLFFKLGYSHPVIIFIPEVLEVESIKNNLSFRSAHLIVLKNFSLSLRRLRFPDSYKGSGVI 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: Q2TUD2_DICDH (Ribosomal protein L6 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUD2_DICDH)

HSP 1 Score: 105 bits (262), Expect = 5.900e-27
Identity = 50/89 (56.18%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            Q L G+SLSYVL L L G+GY+V+K    +  KLGYSH     +PEV+ +KCIKN +  RS+HL+ L  F+  LR+LRFPDSYKG GVL
Sbjct:   61 QGLYGISLSYVLILVLHGVGYKVDKVDNTIVLKLGYSHMHFIPIPEVINIKCIKNEIHMRSSHLVRLNYFASSLRKLRFPDSYKGRGVL 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A4Y5T8W9_9PHAE (Ribosomal protein L6 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8W9_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.350e-27
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA++GVSLSYVL+L L G+GYRVEK A  L+ KLGYSH V   +PE V   C KN +  RS HL++LK  S  +R+LR+P+ YKG+GVL
Sbjct:   61 QAIIGVSLSYVLELSLVGVGYRVEKVANKLYFKLGYSHLVAVRIPEDVVAGCSKNIITLRSAHLLLLKTVSSKIRKLRYPNPYKGTGVL 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A2H4ZR05_9PHAE (Ribosomal protein L6 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR05_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.530e-23
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA+ GV   Y ++L LKGIGYRV ++   L   LGYS+PVI ++P+ V V   K SLF  S +  +L+NF+  +RRLRFPDSYKGSG++
Sbjct:   61 QAVQGVIFGYTIELTLKGIGYRVREEDDKLIFSLGYSNPVILNIPKDVSVTFSKQSLFIMSPNFSILQNFATAIRRLRFPDSYKGSGIV 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A1I9LW55_9PHAE (Ribosomal protein L6 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW55_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.000e-23
Identity = 46/89 (51.69%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA+ GV   Y L+L LKGIGYRV ++ + LF  LGYS PVI  +P+ + +K  K S    S +  VL+NF+  +RR RFPDSYKG+GVL
Sbjct:   61 QAIQGVVFGYSLELSLKGIGYRVREEKRKLFFSLGYSKPVILDIPKDISIKFNKKSFLLNSANFGVLQNFATTIRRYRFPDSYKGAGVL 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: Q94Z21_PYLLI (Ribosomal protein L6 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z21_PYLLI)

HSP 1 Score: 95.5 bits (236), Expect = 5.000e-23
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA+ GV L Y ++L LKGIGY+V  + +NL   LGYS PVI ++PE V VK  K S    S ++ VL+NF+ M+R  RFPDSYKG+G+L
Sbjct:   61 QAVQGVVLGYTIELNLKGIGYKVSTKERNLILSLGYSKPVILNIPEEVSVKLSKKSFSLISPNMGVLQNFATMVRSQRFPDSYKGAGIL 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: Q2TUH0_9PHAE (Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH0_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 7.080e-23
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA++GV L Y ++L+LKGIGYRV ++   L   LGYS P+I ++PE + VK  K +   RS +  +L+NF+  +RR RFPD YKG G+L
Sbjct:   61 QAVLGVILGYTIELKLKGIGYRVREEKGKLIFSLGYSRPIILTIPEAISVKFNKKTFLLRSANFGLLQNFATTIRRFRFPDPYKGGGIL 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A8F0FCE9_9PHAE (Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FCE9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.000e-22
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA+ GV L Y ++L+LKGIGYRV ++   L   LGYS PV+ ++P+ VEVK  K +    S +  VL+NF+  +RR RFPDSYKG+GVL
Sbjct:   61 QAIYGVVLGYTIELRLKGIGYRVREEDNKLIFSLGYSRPVLLNIPKDVEVKFSKRTFSLMSANYGVLQNFATTIRRYRFPDSYKGAGVL 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: W5RGA8_COSCS (Ribosomal protein L6 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RGA8_COSCS)

HSP 1 Score: 94.0 bits (232), Expect = 2.010e-22
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA+ GV L Y ++L+LKGIGYRV ++ K LF  LGYS  V+  +PE V VK  K +    S +  VL+NF+  +RR R+PDSYKG+GVL
Sbjct:   61 QAIFGVVLGYTIELKLKGIGYRVREEEKKLFFSLGYSKAVVVDIPEAVSVKLGKKTFSLISANFGVLQNFASSIRRYRYPDSYKGAGVL 149          
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Match: A0A516ICG7_9PHAE (Ribosomal protein L6 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICG7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.020e-22
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEVKCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL 267
            QA++GV L Y ++L+L+GIGYRV+++ K L   LGYS PVI ++PE V V   K +    S +L VL+NF+  +R+ R+PDSYKG+GVL
Sbjct:   61 QAILGVVLGYTIELKLQGIGYRVQQEKKKLIFFLGYSKPVIINIPEEVSVNLGKKTFLLISANLGVLQNFASSIRKYRYPDSYKGAGVL 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1414.2525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K262_9PHAE2.820e-4282.02Ribosomal protein L6 n=1 Tax=Protohalopteris sp. T... [more]
Q2TUD2_DICDH5.900e-2756.18Ribosomal protein L6 n=1 Tax=Dictyota dichotoma Ta... [more]
A0A4Y5T8W9_9PHAE8.350e-2757.30Ribosomal protein L6 n=1 Tax=Dictyopteris divarica... [more]
A0A2H4ZR05_9PHAE3.530e-2351.69Ribosomal protein L6 n=2 Tax=Endarachne binghamiae... [more]
A0A1I9LW55_9PHAE5.000e-2351.69Ribosomal protein L6 n=1 Tax=Pleurocladia lacustri... [more]
Q94Z21_PYLLI5.000e-2352.81Ribosomal protein L6 n=1 Tax=Pylaiella littoralis ... [more]
Q2TUH0_9PHAE7.080e-2348.31Ribosomal protein L6 n=2 Tax=Desmarestia TaxID=313... [more]
A0A8F0FCE9_9PHAE1.000e-2251.69Ribosomal protein L6 n=1 Tax=Chorda asiatica TaxID... [more]
W5RGA8_COSCS2.010e-2251.69Ribosomal protein L6 n=1 Tax=Costaria costata TaxI... [more]
A0A516ICG7_9PHAE4.020e-2250.56Ribosomal protein L6 n=3 Tax=Lessonia TaxID=105411... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1414contigH-paniculata_contig1414:23721..23990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.6
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog242159.ABO99616
Preferred namePRPL6
KEGG koko:K02933
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the universal ribosomal protein uL6 family
EggNOG OGs34I2E@3041,37NEG@33090,COG0097@1,KOG3254@2759
Ec32 ortholog description30S ribosomal protein S8
Ec32 orthologEc-14_000060.2
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.5306478-CDS-H-paniculata_contig1414:23720..239901622929125.5306478-CDS-H-paniculata_contig1414:23720..23990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 23721..23990 -
1691480740.8127427-CDS-H-paniculata_contig1414:23720..239901691480740.8127427-CDS-H-paniculata_contig1414:23720..23990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1414 23721..23990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1414.2525.1prot_H-paniculata_contig1414.2525.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1414 23721..23990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1414.2525.1

>prot_H-paniculata_contig1414.2525.1 ID=prot_H-paniculata_contig1414.2525.1|Name=mRNA_H-paniculata_contig1414.2525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
QALVGVSLSYVLKLQLKGIGYRVEKQAKNLFSKLGYSHPVIFSVPEVVEV
KCIKNSLFFRSTHLIVLKNFSLMLRRLRFPDSYKGSGVL*
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mRNA from alignment at H-paniculata_contig1414:23721..23990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1414.2525.1 ID=mRNA_H-paniculata_contig1414.2525.1|Name=mRNA_H-paniculata_contig1414.2525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig1414:23721..23990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGCTTTAGTTGGCGTTAGTTTATCTTATGTTTTAAAATTACAGCTTAA AGGGATTGGTTATAGAGTAGAAAAGCAAGCTAAAAATCTTTTTTCAAAGC TCGGCTATAGTCATCCTGTAATATTTTCGGTACCAGAGGTTGTTGAAGTA AAATGTATAAAAAATAGTCTTTTTTTCCGATCAACCCATTTAATTGTATT AAAAAATTTTAGTTTAATGTTGCGAAGACTTCGTTTTCCTGATTCTTATA AAGGTAGTGGAGTTCTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1414:23721..23990-

>mRNA_H-paniculata_contig1414.2525.1 ID=mRNA_H-paniculata_contig1414.2525.1|Name=mRNA_H-paniculata_contig1414.2525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig1414:23721..23990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGCTTTAGTTGGCGTTAGTTTATCTTATGTTTTAAAATTACAGCTTAA
AGGGATTGGTTATAGAGTAGAAAAGCAAGCTAAAAATCTTTTTTCAAAGC
TCGGCTATAGTCATCCTGTAATATTTTCGGTACCAGAGGTTGTTGAAGTA
AAATGTATAAAAAATAGTCTTTTTTTCCGATCAACCCATTTAATTGTATT
AAAAAATTTTAGTTTAATGTTGCGAAGACTTCGTTTTCCTGATTCTTATA
AAGGTAGTGGAGTTCTTTAACAAGCTTTAGTTGGCGTTAGTTTATCTTAT
GTTTTAAAATTACAGCTTAAAGGGATTGGTTATAGAGTAGAAAAGCAAGC
TAAAAATCTTTTTTCAAAGCTCGGCTATAGTCATCCTGTAATATTTTCGG
TACCAGAGGTTGTTGAAGTAAAATGTATAAAAAATAGTCTTTTTTTCCGA
TCAACCCATTTAATTGTATTAAAAAATTTTAGTTTAATGTTGCGAAGACT
TCGTTTTCCTGATTCTTATAAAGGTAGTGGAGTTCTTTAA
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