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Homology
BLAST of mRNA_H-paniculata_contig14136.2522.1 vs. uniprot
Match: D8LMU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU6_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.060e-37 Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 1
Query: 1 TAADLGELAWQTQQRVFLGLLAELPEGKEAVMACAQLKMERDRERQEERSTRELPKAARESEDRMRLAFFREVCQALAAMGASPALRAPKKLQVDKAMCLRAVGFLVARVGSQQQRQ 351
+AADLGEL+W+T+QRV LGLLAELPEGKEAVMACAQL+MER+R RQ +++ + LP A R +ED +R FF EV LAA+GA+PALRAPKKLQ D +CLRAVGFL ARV S+Q R+
Sbjct: 22 SAADLGELSWRTKQRVLLGLLAELPEGKEAVMACAQLQMERNRARQLDKAAKALPVALRRAEDELRRTFFAEVGAVLAALGAAPALRAPKKLQGDAGVCLRAVGFLAARVSSRQLRR 138
BLAST of mRNA_H-paniculata_contig14136.2522.1 vs. uniprot
Match: A0A6H5J9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B9_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.710e-13 Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 133 RQEERSTRELPKAARESEDRMRLAFFREVCQALAAMGASPALRAPKKLQVDKAMCLRAVGFLVARVGSQQQRQ 351
RQ +++ + LP +R +ED +R AFF EV LAA+GA+PALRAPKKLQ D +C RAVGFL ARV S Q+R+
Sbjct: 12 RQLDKAAKALPVTSRRTEDELRRAFFAEVGAVLAALGAAPALRAPKKLQGDAGVCFRAVGFLAARVSSHQRRR 84
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 634 |
| Cds size | 633 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14136.2522.1 >prot_H-paniculata_contig14136.2522.1 ID=prot_H-paniculata_contig14136.2522.1|Name=mRNA_H-paniculata_contig14136.2522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
TAADLGELAWQTQQRVFLGLLAELPEGKEAVMACAQLKMERDRERQEERS
TRELPKAARESEDRMRLAFFREVCQALAAMGASPALRAPKKLQVDKAMCL
RAVGFLVARVGSQQQRQGNNTSAPGLHAAGIAPRTQRAVPNGGRAGAGAS
TVPLYHSRRVPYIPDSAAAATAAATGMVGGTKAAIAAAASTARTGNSNVT
AGGNDALRRGG back to topmRNA from alignment at H-paniculata_contig14136:3433..5997- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig14136.2522.1 ID=mRNA_H-paniculata_contig14136.2522.1|Name=mRNA_H-paniculata_contig14136.2522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2565bp|location=Sequence derived from alignment at H-paniculata_contig14136:3433..5997- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCTGCTGATCTTGGAGAGCTGGCATGGCAAACCCAGCAGCGGGTATT
CCTGGGCTTGCTCGCGGAGGTACCGTACGTTATGCAACGGCTGGTAACAC
GCAAGGCCGTCCTTTTCTTGTGATAACTTCCGGAATCCACATCGCAAGCT
TGCTTGTAGAAGTTTTGCCGGTTTGGCGCCGGCACCTCCCCTGTCTAGGG
TACAGGGCCATGTTATATAGATCGGCATCAAACTCCAGGGATCTTAGAAG
TATTCAATATATAAAGAGGCGTTCGGATGGCGGATCTGAGTTTTGGAAAT
TCATCATTATACCAACATATAGAGTCTTGTTTTCTTGTTTCTTGGAAATT
AGAAACCGATTAAGGTTTCTTCACGACAGCACGACCCCACGCACAGATAT
CGTTTTTTTATCGGAAATTTTTTGTGGAGTAAAAAATTGTAAACGTCTTC
AGTAGAACAGTAGGATGGCAGTTACTTGATTGGTCCTTGGGCAAATCATT
TTGGTTCGTCAGCGACACTTTAGTTTGATTCTTGATGCTCACTACGAATC
GCGGTACCTTGAGTCTGCAAACTGAAGGGAGGCAAATACGGTGTATAAAA
TTTAAATGTATTAAGGTTACGGTTGCAGTTATGGACGGTCCTCTTAACAT
TTGTGGTCAACCCGCGCGAAAAATGCAGCGTGTTTGATGGCTTCATCGGT
ACTGTGGTCCGTGCACGCAACACGTGAGCAAGCGCCTGTTGATCGCGTAT
CTCGATTCAGCCAGCCGCTTCGGAACTTGCCAATTCATAGCCGCAGATCC
ATGTGCATAAAAAACGCACCATAGGTTGGGGCATGCTTACCGCTTTGCTG
CCCCGTACGTATTACCGATGAGCATTACCGCATGATCGGTGTACGAAACG
CTTCAACTACTGTGCGTGCTCTGTTGATTTCTTCTTGCAAAGCTTCCCGA
GGGCAAGGAAGCCGTGATGGCCTGCGCGCAATTGAAGATGGAGCGCGACA
GAGAGCGGCAGGTGAGAAGAAGAAAAAACAAAAAACGACCAAAACTTTCT
TGTTTGTTTCGCTGTGTTTTCACCCCACCCCCGATGTACCGCTACGGCAG
CGTGTGCCCGCTACGGCCTTGTTTGTGTTTATGTTTATGTTTTGTTGTTT
TTTTTCTGGTTCGAAATCACGCAGCATACATACCAGTAACAGGAATATTA
GCTGACGGCGAAGGTACGCAGCAATGGGTTACCTCCGCGCCTGCCGTACT
CGATGTTTACCATCTTGAGGCAGGCATATTTGTCATCGCCAAGCCTAAAC
AATTATTACCTCTCCCCCAACATTTTATTATGTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTAAAATGATGTCGTCAAATACACGGAGTG
GCTCTTTTTCGCGTGCCACGTATTGTACTCAGCCCATAGAAGCCCCCTCC
ACGTTGGCCGAGCCCTTGCTTTACTCTCCACCCGCCGCGGGCGCATGTGT
ACAGGAAGAGAGGTCGACTAGGGAATTGCCCAAAGCGGCGCGTGAGAGCG
AAGATCGAATGCGCTTAGCTTTTTTCCGCGAGGTATGCCAGGCGCTGGCT
GCAATGGGCGCATCCCCCGCGCTGAGGGCTCCCAAGAAGCTGCAAGTGGA
CAAGGCTATGTGCCTCAGGTGCTCCATGTATATAGCTGTGCATTTCGTAC
TTAACATTCATCACGAACTACCGTGCGTGGGCAAGCGAAAGGCGGGAGCC
GAGGAGCATGTTGATGAAATGGTGGCGGCCTAGTACAGCAAAAATAGAGG
AAAGAAAACGATCGCTGTTATTGTTTTCAACGAGGCCGGTTTGTTGATGG
CAGGCTGGGCTTGCCACAACGTAGAGTGCAAACCCAGCACCACTATCCCG
CTAGACTGCTCGCTGTGCATCAAAATAATGGGTTCTCGGTGGACTCTTGA
AACGAAACCCAGCAGCATCGAAACGAAATATGAAGGGACAAAAACAGAGA
GTTCGCCTTTCTCACTGGCTGGTAATGAAGTGAAGCATTTGAAAACACTG
TATACTGTATACCCCTGCACTGTGTGCGCACACGGGGTTCCTAAACTGAG
GTATCTCGGCATAGTACACTATCCAAACAAATACTGAGAGGGTATGGAGT
GGATTGATCGCCCTGAAACTATACGCATTACCACAGCTACATCACTACAA
CGCTCCACTGCACGTAAACTTTCGTTTTACGCAGGGCCGTGGGCTTCCTC
GTCGCGCGAGTCGGTAGCCAGCAACAACGCCAGGGCAATAATACCTCCGC
CCCTGGACTCCACGCCGCTGGTATCGCTCCCCGCACTCAACGCGCCGTGC
CCAATGGCGGACGAGCCGGCGCGGGGGCTTCAACCGTCCCCCTTTATCAT
AGTCGGCGTGTTCCATATATTCCTGATTCTGCGGCTGCGGCCACAGCCGC
AGCAACAGGCATGGTTGGTGGAACCAAAGCAGCAATCGCTGCTGCAGCAA
GCACAGCTAGGACCGGGAATAGTAATGTAACCGCGGGTGGGAATGACGCG
CTGCGCCGCGGCGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig14136:3433..5997- >mRNA_H-paniculata_contig14136.2522.1 ID=mRNA_H-paniculata_contig14136.2522.1|Name=mRNA_H-paniculata_contig14136.2522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig14136:3433..5997- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCTGCTGATCTTGGAGAGCTGGCATGGCAAACCCAGCAGCGGGTATT
CCTGGGCTTGCTCGCGGAGACTGCTGCTGATCTTGGAGAGCTGGCATGGC
AAACCCAGCAGCGGGTATTCCTGGGCTTGCTCGCGGAGCTTCCCGAGGGC
AAGGAAGCCGTGATGGCCTGCGCGCAATTGAAGATGGAGCGCGACAGAGA
GCGGCAGCTTCCCGAGGGCAAGGAAGCCGTGATGGCCTGCGCGCAATTGA
AGATGGAGCGCGACAGAGAGCGGCAGGAAGAGAGGTCGACTAGGGAATTG
CCCAAAGCGGCGCGTGAGAGCGAAGATCGAATGCGCTTAGCTTTTTTCCG
CGAGGTATGCCAGGCGCTGGCTGCAATGGGCGCATCCCCCGCGCTGAGGG
CTCCCAAGAAGCTGCAAGTGGACAAGGCTATGTGCCTCAGGAAGAGAGGT
CGACTAGGGAATTGCCCAAAGCGGCGCGTGAGAGCGAAGATCGAATGCGC
TTAGCTTTTTTCCGCGAGGTATGCCAGGCGCTGGCTGCAATGGGCGCATC
CCCCGCGCTGAGGGCTCCCAAGAAGCTGCAAGTGGACAAGGCTATGTGCC
TCAGGGCCGTGGGCTTCCTCGTCGCGCGAGTCGGTAGCCAGCAACAACGC
CAGGGCAATAATACCTCCGCCCCTGGACTCCACGCCGCTGGTATCGCTCC
CCGCACTCAACGCGCCGTGCCCAATGGCGGACGAGCCGGCGCGGGGGCTT
CAACCGTCCCCCTTTATCATAGTCGGCGTGTTCCATATATTCCTGATTCT
GCGGCTGCGGCCACAGCCGCAGCAACAGGCATGGTTGGTGGAACCAAAGC
AGCAATCGCTGCTGCAGCAAGCACAGCTAGGACCGGGAATAGTAATGTAA
CCGCGGGTGGGAATGACGCGCTGCGCCGCGGCGGGGGCCGTGGGCTTCCT
CGTCGCGCGAGTCGGTAGCCAGCAACAACGCCAGGGCAATAATACCTCCG
CCCCTGGACTCCACGCCGCTGGTATCGCTCCCCGCACTCAACGCGCCGTG
CCCAATGGCGGACGAGCCGGCGCGGGGGCTTCAACCGTCCCCCTTTATCA
TAGTCGGCGTGTTCCATATATTCCTGATTCTGCGGCTGCGGCCACAGCCG
CAGCAACAGGCATGGTTGGTGGAACCAAAGCAGCAATCGCTGCTGCAGCA
AGCACAGCTAGGACCGGGAATAGTAATGTAACCGCGGGTGGGAATGACGC
GCTGCGCCGCGGCGGG back to top
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