mRNA_H-paniculata_contig1410.2509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1410.2509.1
Unique NamemRNA_H-paniculata_contig1410.2509.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1410.2509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1410contigH-paniculata_contig1410:12477..13166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size226
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.4547539-CDS-H-paniculata_contig1410:12476..125121622929123.4547539-CDS-H-paniculata_contig1410:12476..12512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1410 12477..12512 -
1691480739.9507742-CDS-H-paniculata_contig1410:12476..125121691480739.9507742-CDS-H-paniculata_contig1410:12476..12512Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1410 12477..12512 -
1622929123.469177-CDS-H-paniculata_contig1410:12977..131661622929123.469177-CDS-H-paniculata_contig1410:12977..13166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1410 12978..13166 -
1691480739.963198-CDS-H-paniculata_contig1410:12977..131661691480739.963198-CDS-H-paniculata_contig1410:12977..13166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1410 12978..13166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1410.2509.1prot_H-paniculata_contig1410.2509.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1410 12477..13166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1410.2509.1

>prot_H-paniculata_contig1410.2509.1 ID=prot_H-paniculata_contig1410.2509.1|Name=mRNA_H-paniculata_contig1410.2509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MEEEKGDWVPEVDGRETKTGEAIAGYSQETDERGSGVGTAKDSSLESPSV
LRPGRQVSASRKEQHTKRSMGNRHT
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mRNA from alignment at H-paniculata_contig1410:12477..13166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1410.2509.1 ID=mRNA_H-paniculata_contig1410.2509.1|Name=mRNA_H-paniculata_contig1410.2509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at H-paniculata_contig1410:12477..13166- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAGAAAGGAGACTGGGTGCCAGAGGTGGACGGAAGAGAAAC
GAAAACGGGCGAAGCAATAGCAGGGTATTCGCAAGAAACCGATGAGCGTG
GTTCAGGAGTAGGAACAGCAAAAGACAGTAGTCTGGAATCACCTAGTGTA
CTTCGACCCGGCCGTCAAGTATCCGCCAGCCGTAAGGAGGTGGGTTGGAG
AATCTGACGACGAAGTGCCACGGGTGTTTTCCTATCTGCATCATCCATTG
AGAAATTGTCAAATGACGCCGAGCTCAAATGCGCAGCGCGTAGTACGGCA
GAAGTGAAATTTGACACGTATATTTTCTCGCCTTCACCGTATGTTGTTGA
CACTGCAATGATTCCGCTCTGTCGCAAACATTTCCCACGTAAATAAGTTC
AGTTCCAAACGCGCGTAGAATTCGTGAACAAATTCAAATTTTGACTTCGT
TGGCAAACCTCGTGGCTATTGTAAAGCCCTGGCAAATATTTGTCTAAAAC
CATTCCAAGTGCCCCGCAGATTTTGGGAAACGAGCTAAAATTCATTGTTT
TTGCGGTGATATCCGTGGTTGAGCTTGACGCCGCTATATCTGTTCTACAC
TGCAATGCTAATAACTGGACATGCGCGGTCATTTTGTGTATTTCTCGAAA
GCAGCAGCATACCAAACGAAGTATGGGTAACCGGCACACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1410:12477..13166-

>mRNA_H-paniculata_contig1410.2509.1 ID=mRNA_H-paniculata_contig1410.2509.1|Name=mRNA_H-paniculata_contig1410.2509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig1410:12477..13166- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAGAAAGGAGACTGGGTGCCAGAGGTGGACGGAAGAGAAAC
GAAAACGGGCGAAGCAATAGCAGGGTATTCGCAAGAAACCGATGAGCGTG
GTTCAGGAGTAGGAACAGCAAAAGACAGTAGTCTGGAATCACCTAGTGTA
CTTCGACCCGGCCGTCAAGTATCCGCCAGCCGTAAGGAGATGGAGGAAGA
GAAAGGAGACTGGGTGCCAGAGGTGGACGGAAGAGAAACGAAAACGGGCG
AAGCAATAGCAGGGTATTCGCAAGAAACCGATGAGCGTGGTTCAGGAGTA
GGAACAGCAAAAGACAGTAGTCTGGAATCACCTAGTGTACTTCGACCCGG
CCGTCAAGTATCCGCCAGCCGTAAGGAGCAGCATACCAAACGAAGTATGG
GTAACCGGCACACGCAGCATACCAAACGAAGTATGGGTAACCGGCACACG
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