mRNA_H-paniculata_contig14097.2500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14097.2500.1
Unique NamemRNA_H-paniculata_contig14097.2500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14097.2500.1 vs. uniprot
Match: A0A6H5KVE2_9PHAE (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVE2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.160e-13
Identity = 45/100 (45.00%), Postives = 54/100 (54.00%), Query Frame = 3 
Query:   12 LGNGVLYMRGEASQEELSELGTNPATVISLQRMLSEGKQAGGERVVDSSSDCAGVRDDHDEATGAQDTGDDDGDVSSKGYSKLFHFTSEDIWNRVPAATA 311
            L  G+LYMRGE S+EEL+ELG  P+TVI LQR+L E  Q G                  D   G        G    +GYS +FHFTSE IWNRVP A++
Sbjct:  418 LKRGILYMRGEVSEEELAELGARPSTVIPLQRVLEEAGQDG------------------DVGLG--------GGADDRGYSSIFHFTSEAIWNRVPIASS 491
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14097.2500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVE2_9PHAE1.160e-1345.00SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14097contigH-paniculata_contig14097:3366..3723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionrRNA small subunit methyltransferase G
Ec32 orthologEc-10_005240.1
Exons1
Model size358
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14097.2500.1prot_H-paniculata_contig14097.2500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14097 3398..3691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.5088515-UTR-H-paniculata_contig14097:3365..33971622929122.5088515-UTR-H-paniculata_contig14097:3365..3397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14097 3366..3397 +
1691480739.5028489-UTR-H-paniculata_contig14097:3365..33971691480739.5028489-UTR-H-paniculata_contig14097:3365..3397Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14097 3366..3397 +
1622929122.5337658-UTR-H-paniculata_contig14097:3691..37231622929122.5337658-UTR-H-paniculata_contig14097:3691..3723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14097 3692..3723 +
1691480739.5242317-UTR-H-paniculata_contig14097:3691..37231691480739.5242317-UTR-H-paniculata_contig14097:3691..3723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14097 3692..3723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.521163-CDS-H-paniculata_contig14097:3397..36911622929122.521163-CDS-H-paniculata_contig14097:3397..3691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14097 3398..3691 +
1691480739.513249-CDS-H-paniculata_contig14097:3397..36911691480739.513249-CDS-H-paniculata_contig14097:3397..3691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14097 3398..3691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14097.2500.1

>prot_H-paniculata_contig14097.2500.1 ID=prot_H-paniculata_contig14097.2500.1|Name=mRNA_H-paniculata_contig14097.2500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MRGEASQEELSELGTNPATVISLQRMLSEGKQAGGERVVDSSSDCAGVRD
DHDEATGAQDTGDDDGDVSSKGYSKLFHFTSEDIWNRVPAATAIDRI*
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mRNA from alignment at H-paniculata_contig14097:3366..3723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14097.2500.1 ID=mRNA_H-paniculata_contig14097.2500.1|Name=mRNA_H-paniculata_contig14097.2500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=358bp|location=Sequence derived from alignment at H-paniculata_contig14097:3366..3723+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGTGTTCTTAGGGAACGGGGTTTTGTACATGAGGGGGGAAGCGTCG
CAAGAGGAGCTGTCGGAGTTGGGCACGAATCCTGCCACTGTGATTTCTCT
GCAACGCATGCTCTCGGAAGGCAAACAGGCAGGCGGGGAAAGGGTGGTGG
ACAGCAGTAGTGACTGTGCTGGTGTAAGAGATGATCATGACGAAGCCACT
GGTGCTCAAGATACCGGTGATGATGATGGTGATGTGAGCAGCAAGGGCTA
CTCTAAATTATTCCATTTCACGTCGGAGGATATTTGGAATAGGGTTCCTG
CCGCGACCGCAATCGATCGAATATGAATGACGCTGTTAATGAAATACAAC
ATTTGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig14097:3366..3723+

>mRNA_H-paniculata_contig14097.2500.1 ID=mRNA_H-paniculata_contig14097.2500.1|Name=mRNA_H-paniculata_contig14097.2500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig14097:3366..3723+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGGGGAAGCGTCGCAAGAGGAGCTGTCGGAGTTGGGCACGAATCC
TGCCACTGTGATTTCTCTGCAACGCATGCTCTCGGAAGGCAAACAGGCAG
GCGGGGAAAGGGTGGTGGACAGCAGTAGTGACTGTGCTGGTGTAAGAGAT
GATCATGACGAAGCCACTGGTGCTCAAGATACCGGTGATGATGATGGTGA
TGTGAGCAGCAAGGGCTACTCTAAATTATTCCATTTCACGTCGGAGGATA
TTTGGAATAGGGTTCCTGCCGCGACCGCAATCGATCGAATATGAATGAGG
GGGGAAGCGTCGCAAGAGGAGCTGTCGGAGTTGGGCACGAATCCTGCCAC
TGTGATTTCTCTGCAACGCATGCTCTCGGAAGGCAAACAGGCAGGCGGGG
AAAGGGTGGTGGACAGCAGTAGTGACTGTGCTGGTGTAAGAGATGATCAT
GACGAAGCCACTGGTGCTCAAGATACCGGTGATGATGATGGTGATGTGAG
CAGCAAGGGCTACTCTAAATTATTCCATTTCACGTCGGAGGATATTTGGA
ATAGGGTTCCTGCCGCGACCGCAATCGATCGAATATGA
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