mRNA_H-paniculata_contig14089.2495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14089.2495.1
Unique NamemRNA_H-paniculata_contig14089.2495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: D8LTC1_ECTSI (Nucleolar GTP-binding protein 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTC1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.950e-38
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIF+VDCPGV
Sbjct:  252 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFIVDCPGV 319
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BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A7S3AED6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AED6_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 1.180e-36
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPG 210
            LRQFAKLH DKKQISVG +GYPNVGKSSIINTLKKKKVCKVAP+PGETKVWQYI LM+ I+++DCPG
Sbjct:    7 LRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLKKKKVCKVAPIPGETKVWQYITLMKSIYLIDCPG 73
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BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A6U1NL74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NL74_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.280e-36
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFAKLH DKK ISVGV+GYPNVGKSS+INTLKKKKVCKVAP+PGETKVWQYI LMRRIF++DCPGV
Sbjct:  153 LRQFAKLHQDKKNISVGVIGYPNVGKSSLINTLKKKKVCKVAPIPGETKVWQYITLMRRIFLIDCPGV 220
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BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A7S0NCH8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NCH8_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 3.270e-36
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPG 210
            LRQFAKLH DKK IS+G +GYPNVGKSS+INTLKKKKVCKVAP+PGETKVWQYI LM++I++VDCPG
Sbjct:   69 LRQFAKLHADKKNISIGFIGYPNVGKSSVINTLKKKKVCKVAPIPGETKVWQYITLMKQIYLVDCPG 135
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BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A067CN65_SAPPC (Nucleolar GTP-binding protein 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CN65_SAPPC)

HSP 1 Score: 133 bits (335), Expect = 3.760e-35
Identity = 57/68 (83.82%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFAKLHP+KKQISVG++GYPNVGKSS+IN L+KK+VCKVAP+PGETKVWQYI LMRRIF++DCPGV
Sbjct:  309 LRQFAKLHPEKKQISVGIIGYPNVGKSSVINALRKKRVCKVAPIPGETKVWQYITLMRRIFLIDCPGV 376
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BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A2D4CD57_PYTIN (Nucleolar GTP-binding protein 2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD57_PYTIN)

HSP 1 Score: 132 bits (331), Expect = 4.640e-35
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFAKLH DKKQISVG++GYPNVGKSS+IN L+KKKVCKVAP+PGETKVWQYI LMRRIF++DCPG+
Sbjct:  247 LRQFAKLHQDKKQISVGLIGYPNVGKSSVINALRKKKVCKVAPIPGETKVWQYITLMRRIFLIDCPGI 314
[Close]
BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: F0W5L7_9STRA (Nucleolar GTP-binding protein 2 n=2 Tax=Albugo TaxID=65356 RepID=F0W5L7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 8.570e-35
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFA+LHPDKKQISVGV+G+PNVGKSS+IN L+KKKVC VAP+PGETKVWQYI LMRRIF++DCPGV
Sbjct:  299 LRQFARLHPDKKQISVGVIGFPNVGKSSVINALRKKKVCNVAPIPGETKVWQYITLMRRIFLIDCPGV 366
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BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A8K1C6Q5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6Q5_PYTOL)

HSP 1 Score: 132 bits (331), Expect = 1.120e-34
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFAKLH DKKQISVG++GYPNVGKSS+IN L+KKKVCKVAP+PGETKVWQYI LMRRIF++DCPG+
Sbjct:  301 LRQFAKLHQDKKQISVGLIGYPNVGKSSVINALRKKKVCKVAPIPGETKVWQYITLMRRIFLIDCPGI 368
[Close]
BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A1V9YIG0_9STRA (Nucleolar GTP-binding protein 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIG0_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.230e-34
Identity = 57/68 (83.82%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFAKLHP+KKQISVG++GYPNVGKSS+IN L+KK+VCKVAP+PGETKVWQYI LMRRIF++DCPGV
Sbjct:  309 LRQFAKLHPEKKQISVGLIGYPNVGKSSVINALRKKRVCKVAPIPGETKVWQYITLMRRIFLIDCPGV 376
[Close]
BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Match: A0A1W0AB34_9STRA (Nucleolar GTP-binding protein 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AB34_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.000e-34
Identity = 57/68 (83.82%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:   10 LRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGETKVWQYIALMRRIFVVDCPGV 213
            LRQFAKLHP+KKQISVG++GYPNVGKSS+IN L+KK+VCKVAP+PGETKVWQYI LMRRIF++DCPGV
Sbjct:  758 LRQFAKLHPEKKQISVGLIGYPNVGKSSVINALRKKRVCKVAPIPGETKVWQYITLMRRIFLIDCPGV 825
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14089.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTC1_ECTSI1.950e-3898.53Nucleolar GTP-binding protein 2 n=2 Tax=Ectocarpus... [more]
A0A7S3AED6_9EUKA1.180e-3685.07Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A6U1NL74_9STRA1.280e-3688.24Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0NCH8_9EUKA3.270e-3682.09Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A067CN65_SAPPC3.760e-3583.82Nucleolar GTP-binding protein 2 n=2 Tax=Saprolegni... [more]
A0A2D4CD57_PYTIN4.640e-3583.82Nucleolar GTP-binding protein 2 n=1 Tax=Pythium in... [more]
F0W5L7_9STRA8.570e-3583.82Nucleolar GTP-binding protein 2 n=2 Tax=Albugo Tax... [more]
A0A8K1C6Q5_PYTOL1.120e-3483.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YIG0_9STRA1.230e-3483.82Nucleolar GTP-binding protein 2 n=1 Tax=Achlya hyp... [more]
A0A1W0AB34_9STRA2.000e-3483.82Nucleolar GTP-binding protein 2 n=1 Tax=Thraustoth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14089contigH-paniculata_contig14089:5985..6615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue9.8e-32
Seed eggNOG ortholog2880.D8LTC1
Preferred nameGNL2
KEGG koko:K14537,ko:K16474
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0000166,GO:0001654,GO:0001745,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0009653,GO:0009887,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG2423@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.7789712-CDS-H-paniculata_contig14089:5984..60771622929121.7789712-CDS-H-paniculata_contig14089:5984..6077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14089 5985..6077 -
1691480739.1613243-CDS-H-paniculata_contig14089:5984..60771691480739.1613243-CDS-H-paniculata_contig14089:5984..6077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14089 5985..6077 -
1622929121.7913518-CDS-H-paniculata_contig14089:6495..66151622929121.7913518-CDS-H-paniculata_contig14089:6495..6615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14089 6496..6615 -
1691480739.1744359-CDS-H-paniculata_contig14089:6495..66151691480739.1744359-CDS-H-paniculata_contig14089:6495..6615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14089 6496..6615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14089.2495.1prot_H-paniculata_contig14089.2495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14089 5985..6615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14089.2495.1

>prot_H-paniculata_contig14089.2495.1 ID=prot_H-paniculata_contig14089.2495.1|Name=mRNA_H-paniculata_contig14089.2495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
TRRLRQFAKLHPDKKQISVGVVGYPNVGKSSIINTLKKKKVCKVAPVPGE
TKVWQYIALMRRIFVVDCPGV
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mRNA from alignment at H-paniculata_contig14089:5985..6615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14089.2495.1 ID=mRNA_H-paniculata_contig14089.2495.1|Name=mRNA_H-paniculata_contig14089.2495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=631bp|location=Sequence derived from alignment at H-paniculata_contig14089:5985..6615- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCGACGTCTTCGGCAGTTTGCTAAGCTTCATCCGGACAAGAAGCAAAT
CAGCGTTGGAGTGGTTGGCTATCCGAACGTGGGTAAAAGCTCTATCATCA
ACACTCTCAAAAAGAAGAAGGTATGTATCCTTTTATGCTTGATCATTGTT
CAATAAATAGAGAGGGTTATAGTGCTTACTTGAGGGGGGTAACATCGAAT
CCAACAAGTGATGCTGGGATTATGACGATGACTCATCTTGGCGGATTTTG
GATTATGACTATGAGTACAGCCAATTACACTCTGGAGATGTATGTACGTA
CTTCATGTCCCTCGACTCATGCATGATATTCATCAAGGTTGGTGTTTCAT
AATTTAGGAGTACAGGTTAGAACTGCTCTGAAACAACGTTGTCCACAACC
GATATTTATCGTATTTGTGACCAACTGAGTCATGACAAGTGTGGGTTTTC
CCGCTCCCTCTGACGTCCCCTTTCCCTCCCCGCGTTCTGTTACTACTTGT
CTTATAAATCGGTTTTGTTTGTTGCCGTTGTCGGCCAGGTGTGCAAGGTT
GCTCCTGTGCCCGGGGAAACAAAGGTTTGGCAGTACATCGCCCTCATGCG
CCGTATCTTCGTTGTGGACTGCCCCGGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14089:5985..6615-

>mRNA_H-paniculata_contig14089.2495.1 ID=mRNA_H-paniculata_contig14089.2495.1|Name=mRNA_H-paniculata_contig14089.2495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig14089:5985..6615- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCGACGTCTTCGGCAGTTTGCTAAGCTTCATCCGGACAAGAAGCAAAT
CAGCGTTGGAGTGGTTGGCTATCCGAACGTGGGTAAAAGCTCTATCATCA
ACACTCTCAAAAAGAAGAAGACGCGACGTCTTCGGCAGTTTGCTAAGCTT
CATCCGGACAAGAAGCAAATCAGCGTTGGAGTGGTTGGCTATCCGAACGT
GGGTAAAAGCTCTATCATCAACACTCTCAAAAAGAAGAAGGTGTGCAAGG
TTGCTCCTGTGCCCGGGGAAACAAAGGTTTGGCAGTACATCGCCCTCATG
CGCCGTATCTTCGTTGTGGACTGCCCCGGGGTGGTGTGCAAGGTTGCTCC
TGTGCCCGGGGAAACAAAGGTTTGGCAGTACATCGCCCTCATGCGCCGTA
TCTTCGTTGTGGACTGCCCCGGGGTG
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