mRNA_H-paniculata_contig14065.2486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14065.2486.1
Unique NamemRNA_H-paniculata_contig14065.2486.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14065.2486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14065contigH-paniculata_contig14065:3645..6303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14065.2486.1prot_H-paniculata_contig14065.2486.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14065 3730..6260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.7721338-UTR-H-paniculata_contig14065:3644..37291622929120.7721338-UTR-H-paniculata_contig14065:3644..3729Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14065 3645..3729 -
1691480738.6988697-UTR-H-paniculata_contig14065:3644..37291691480738.6988697-UTR-H-paniculata_contig14065:3644..3729Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14065 3645..3729 -
1622929120.8249762-UTR-H-paniculata_contig14065:6260..63031622929120.8249762-UTR-H-paniculata_contig14065:6260..6303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14065 6261..6303 -
1691480738.7278216-UTR-H-paniculata_contig14065:6260..63031691480738.7278216-UTR-H-paniculata_contig14065:6260..6303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14065 6261..6303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.7879798-CDS-H-paniculata_contig14065:3729..38391622929120.7879798-CDS-H-paniculata_contig14065:3729..3839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14065 3730..3839 -
1691480738.7091434-CDS-H-paniculata_contig14065:3729..38391691480738.7091434-CDS-H-paniculata_contig14065:3729..3839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14065 3730..3839 -
1622929120.8094578-CDS-H-paniculata_contig14065:6160..62601622929120.8094578-CDS-H-paniculata_contig14065:6160..6260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14065 6161..6260 -
1691480738.7179303-CDS-H-paniculata_contig14065:6160..62601691480738.7179303-CDS-H-paniculata_contig14065:6160..6260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14065 6161..6260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14065.2486.1

>prot_H-paniculata_contig14065.2486.1 ID=prot_H-paniculata_contig14065.2486.1|Name=mRNA_H-paniculata_contig14065.2486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MNDVLASLPDGTWQAAVGGTILGGTATVMLGTTGKLLGLSGITDGAFSTA
TGKVNRARAKLVSNDGDHV*
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mRNA from alignment at H-paniculata_contig14065:3645..6303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14065.2486.1 ID=mRNA_H-paniculata_contig14065.2486.1|Name=mRNA_H-paniculata_contig14065.2486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2659bp|location=Sequence derived from alignment at H-paniculata_contig14065:3645..6303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCGTCAGAAAGCGGTTACACAAGAGAACAGCAGCGGAATCATGAACG
ATGTCCTAGCTTCCTTGCCGGACGGTACATGGCAAGCGGCCGTAGGTGGC
ACGATACTTGGAGGCACTGCTACGGTGATGCTCGGTACTACGGGTGAGTT
TATGACCTTGCGTACGTACCCACAAGCCGTCTTGCGATAGGAGGGTACAG
CTTAATTTTTTTTGGAGAACGACCACTGTCCTGAGAGTCAATTTTGGGGA
ATTTCCAAGTGCGTTTGCTTGCGTACAGTGCTTCCTTCAACCGATTTCCG
TGTTTTTTCGATTATGTTCCCGCGTAATTTCAACCATGTTGTCGGGAGCG
TTGGATCGCAAAATAAGGGCAAAACAATTGGGGGCGACAAGACCAATGTT
GTATATATATATATATACTAGTAGGAGGGCCACGGCTATGCCAGTGGTGG
CAACTACATCGACGATGGCTCCGTATCTCGAGTTTATCCTCACAGACTCG
CTGCGCTTGAAGCCAAATTTAACATCAAGTTTTTGTTTAAAATCAGCTGC
GAATTTTCTCATCAAGCAATTGAAGTTGCTGGCATCGAGGTAATATGAAT
CACCATCTTTGTGGACACTCGTATAGAGGTACAGCAATTCTTCACTCGAA
GTACCCCTATTATCCCCGGACCCTACCTACTAACACCGTTTAGTTCTCGC
GTTGGACAGGAATGGATATTTGGGATAGGGAGCAGTCGCTGTTCAGGCAT
ACAGTTCAGTACAGGCAATACATGCACATGAGGCTCTTGGTTGGTATGGA
TTTGCCTGCAGCAACTGATTGCAGCGCTCGGTATTCGTTTTGTGCTACAT
GTACTTTTTGTTTTCGAAACTGCATCGGGAGGTGAAAGGGTTACATGAGG
CCGTGTCTTACCTAGGCAATTTGAACCAATTAACGACGCATGTTCCCATG
ATTTTTAATCAGTTGAGAGTGCCCAGGTAAGAGACGGCCTTAATCAGCCG
TATTCCATCGTCTGATCTACAAGTGACAAATTATACAAATGTATGTGATG
CACATACGACCTTTCGTTTCATTTGGTTTTACTGTGAGGTTAATGCCCGC
TCGGTTCACGAACCCGGGCAAGGGTATCCTCACCGTCGGTGGTTGCCACG
CCGCTGAGCGGCCTAGCGTTTGAATGATTCTAGACGCGAACATGGCTCGA
TTTGACCTCTGCCCACCAGCACCTAAGGCGTTAGTAATGGGGTTCAAGGC
TAGGGTCACGGCTACTTAGAGCGTTGGCTGCGCTCGCATCTGGTCACAAC
AATCCGTGAAGTACATACACACTAACAAACGTACGCTTTATTGGTTCAAT
GTGCATGTGCACATAGCTGCAAATTGAATACACACCACATCATGCTACGC
TCGGATTTTAGTTAACGAAATTTCGTTTCACTTAGTTTACTGTGGAGGTA
CCGCCCGACCCCATCATGAACTTGAGCAAAAATGGCTTCAAGACCGTTGC
CACGCCGCGAAGCGGTGCAGAGTTCGGGTGATCGTAGACGCGAACGGGAC
CCGATTTGACGTTTGCTAACGCAGTCAATTCCTTTTGGATGGGGTTGAGG
GCTAGGGGCACGGTTGCTTCCAGCGTTGGCTGCTCTCGCATCGGAACACA
ACATAGCGTGATCTACATATGCAAAACGAACACACGCCTTGGCTCACTGC
CCTCATTACTCGCACCCCCTGCACCCAACGCCTTGCTTCCCCCCCTCTGC
GTCATGCATTCCTGCCTCGTGCCACCTCCATGATCGATGCTTGATGTGAG
GTGACAGTACCGAGCTACTGCTTCAGCCCTGCTGCCCTGTCTACTCTCCT
GGTTACCCACACCCTTCCTGTATCCGTTGCCTTGCTACCCCCCCCCCCCA
CCTCGTGCCTTGCACCACCGTCTGGTGTTCGATGTGAGGGGTCATGAGTC
ATGTAATCTCAAAAATGATCGATGTCGAGTTTTGCAGCAAGTCTCCGTTC
GTCCGTTGTTTCAACTGAAAAAAAACAGTCAGTACTTAGTACCCAGCTGC
TTCAGCCCCACTGCATCGCTTCCCGCCCCGTGCTTATGCCGAGCGCCCCT
GTCTTGTGCCATCTTCTGAACTCGAATGCGCGTTGTGGTAGTCTCAAAGT
CGCTGTTGATTACATACCAGGTTTTGGCTGCTGACATCCAAACTTGATTA
ATGTATGGAAATCATAGTTTTATAAAAACAAGGAAAAAATATTTTGCTCT
CGAAAACATTTGGATAACGTGTGGGAAATAGTTTGTGTTCGAAAAGGACC
ATAAGAATGTTATTGTATGTATAGCAATGACCCTAATTTCTACGCTAGAT
GTTCATGCCCCCACCAATTTGTTGAATTTCTCTGCCTATTTTCAACAATA
CAGGGGTATGTTTCTCGTGCGTTTTTTTTCATGTTTGTGTTCGCGTTTTC
GTTTGTTCGTGCAGGCAAGCTGCTTGGACTGAGTGGAATTACAGATGGCG
CCTTCTCGACGGCAACGGGGAAGGTAAATCGTGCAAGAGCAAAATTAGTC
TCGAATGACGGAGACCATGTCTAGACACTTTCAGGCCAGGTTGCCCACAG
TGCGACAAGGTTCGACGGGCAATTTATGACAGTCCCGCGTCGCAAGAGGC
GAGTGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig14065:3645..6303-

>mRNA_H-paniculata_contig14065.2486.1 ID=mRNA_H-paniculata_contig14065.2486.1|Name=mRNA_H-paniculata_contig14065.2486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig14065:3645..6303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGATGTCCTAGCTTCCTTGCCGGACGGTACATGGCAAGCGGCCGT
AGGTGGCACGATACTTGGAGGCACTGCTACGGTGATGCTCGGTACTACGG
ATGAACGATGTCCTAGCTTCCTTGCCGGACGGTACATGGCAAGCGGCCGT
AGGTGGCACGATACTTGGAGGCACTGCTACGGTGATGCTCGGTACTACGG
GCAAGCTGCTTGGACTGAGTGGAATTACAGATGGCGCCTTCTCGACGGCA
ACGGGGAAGGTAAATCGTGCAAGAGCAAAATTAGTCTCGAATGACGGAGA
CCATGTCTAGGCAAGCTGCTTGGACTGAGTGGAATTACAGATGGCGCCTT
CTCGACGGCAACGGGGAAGGTAAATCGTGCAAGAGCAAAATTAGTCTCGA
ATGACGGAGACCATGTCTAG
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