mRNA_H-paniculata_contig14064.2485.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14064.2485.1
Unique NamemRNA_H-paniculata_contig14064.2485.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig14064.2485.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 4.660e-11
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = -2 
Query:  147 KGRTTKEFRLFFFCGHDNSLAECGLEGKGYRIETLRTWVKKSVPFAKALLVVLNITLKSFAGLSIPIEEIAGA 365
            +G  T+E RLFF CG D SLAECG +G+GY ++    WV+K+ P AK  L + +I LK   GL++  +    A
Sbjct:  949 RGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAVSTDTFEAA 1021
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14064.2485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUH6_ECTSI4.660e-1143.84LRR-GTPase of the ROCO family, incomplete sequence... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14064contigH-paniculata_contig14064:4425..4895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.7177265-CDS-H-paniculata_contig14064:4424..48951622929120.7177265-CDS-H-paniculata_contig14064:4424..4895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14064 4425..4895 +
1691480738.6874514-CDS-H-paniculata_contig14064:4424..48951691480738.6874514-CDS-H-paniculata_contig14064:4424..4895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14064 4425..4895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14064.2485.1prot_H-paniculata_contig14064.2485.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14064 4425..4895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14064.2485.1

>prot_H-paniculata_contig14064.2485.1 ID=prot_H-paniculata_contig14064.2485.1|Name=mRNA_H-paniculata_contig14064.2485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
SATVLCSTFSPVARTSSTRSSAAEQASSVNVSAAPSIIDETTLPHDCSSA
PAISSMGMLNPAKLFSVIFRTTSRALANGTLFFTHVRRVSIRYPFPSSPH
SARLLSCPQKKNSLNSFVVLPFPAFLPSLYHVFNLFVQCRSSLSSSLSAS
DSFCRGG
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mRNA from alignment at H-paniculata_contig14064:4425..4895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14064.2485.1 ID=mRNA_H-paniculata_contig14064.2485.1|Name=mRNA_H-paniculata_contig14064.2485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=471bp|location=Sequence derived from alignment at H-paniculata_contig14064:4425..4895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGCGACGGTGCTCTGTTCCACATTTTCCCCTGTCGCGCGTACTTCATC
GACGCGCTCTTCCGCAGCGGAGCAAGCTTCGTCTGTCAATGTTTCTGCCG
CACCTTCCATTATCGATGAGACGACTTTGCCCCACGATTGTTCATCTGCA
CCTGCGATTTCTTCAATGGGAATGCTCAACCCTGCGAAGCTCTTCAGCGT
GATATTTAGGACGACCAGTAGGGCCTTGGCGAACGGGACACTCTTTTTTA
CCCACGTTCGCAGAGTCTCTATCCGGTACCCCTTTCCTTCAAGCCCACAT
TCTGCAAGGCTGTTGTCGTGTCCACAGAAAAAGAACAGTCTAAACTCCTT
CGTTGTCCTGCCTTTTCCGGCCTTCTTGCCCTCATTATACCATGTCTTCA
ACCTCTTCGTCCAGTGTCGTTCCTCTCTTTCCTCCTCTCTCAGCGCTTCA
GACTCGTTTTGCCGCGGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig14064:4425..4895+

>mRNA_H-paniculata_contig14064.2485.1 ID=mRNA_H-paniculata_contig14064.2485.1|Name=mRNA_H-paniculata_contig14064.2485.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig14064:4425..4895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGCGACGGTGCTCTGTTCCACATTTTCCCCTGTCGCGCGTACTTCATC
GACGCGCTCTTCCGCAGCGGAGCAAGCTTCGTCTGTCAATGTTTCTGCCG
CACCTTCCATTATCGATGAGACGACTTTGCCCCACGATTGTTCATCTGCA
CCTGCGATTTCTTCAATGGGAATGCTCAACCCTGCGAAGCTCTTCAGCGT
GATATTTAGGACGACCAGTAGGGCCTTGGCGAACGGGACACTCTTTTTTA
CCCACGTTCGCAGAGTCTCTATCCGGTACCCCTTTCCTTCAAGCCCACAT
TCTGCAAGGCTGTTGTCGTGTCCACAGAAAAAGAACAGTCTAAACTCCTT
CGTTGTCCTGCCTTTTCCGGCCTTCTTGCCCTCATTATACCATGTCTTCA
ACCTCTTCGTCCAGTGTCGTTCCTCTCTTTCCTCCTCTCTCAGCGCTTCA
GACTCGTTTTGCCGCGGAGGCTCCGCGACGGTGCTCTGTTCCACATTTTC
CCCTGTCGCGCGTACTTCATCGACGCGCTCTTCCGCAGCGGAGCAAGCTT
CGTCTGTCAATGTTTCTGCCGCACCTTCCATTATCGATGAGACGACTTTG
CCCCACGATTGTTCATCTGCACCTGCGATTTCTTCAATGGGAATGCTCAA
CCCTGCGAAGCTCTTCAGCGTGATATTTAGGACGACCAGTAGGGCCTTGG
CGAACGGGACACTCTTTTTTACCCACGTTCGCAGAGTCTCTATCCGGTAC
CCCTTTCCTTCAAGCCCACATTCTGCAAGGCTGTTGTCGTGTCCACAGAA
AAAGAACAGTCTAAACTCCTTCGTTGTCCTGCCTTTTCCGGCCTTCTTGC
CCTCATTATACCATGTCTTCAACCTCTTCGTCCAGTGTCGTTCCTCTCTT
TCCTCCTCTCTCAGCGCTTCAGACTCGTTTTGCCGCGGAGGC
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