mRNA_H-paniculata_contig1406.2483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1406.2483.1
Unique NamemRNA_H-paniculata_contig1406.2483.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1406.2483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1406contigH-paniculata_contig1406:16382..16768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1406.2483.1prot_H-paniculata_contig1406.2483.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1406 16453..16761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.147965-UTR-H-paniculata_contig1406:16381..164521622929120.147965-UTR-H-paniculata_contig1406:16381..16452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1406 16382..16452 +
1691480738.4827878-UTR-H-paniculata_contig1406:16381..164521691480738.4827878-UTR-H-paniculata_contig1406:16381..16452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1406 16382..16452 +
1622929120.2841897-UTR-H-paniculata_contig1406:16761..167681622929120.2841897-UTR-H-paniculata_contig1406:16761..16768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1406 16762..16768 +
1691480738.5046055-UTR-H-paniculata_contig1406:16761..167681691480738.5046055-UTR-H-paniculata_contig1406:16761..16768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1406 16762..16768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.269968-CDS-H-paniculata_contig1406:16452..167611622929120.269968-CDS-H-paniculata_contig1406:16452..16761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1406 16453..16761 +
1691480738.4939058-CDS-H-paniculata_contig1406:16452..167611691480738.4939058-CDS-H-paniculata_contig1406:16452..16761Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1406 16453..16761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1406.2483.1

>prot_H-paniculata_contig1406.2483.1 ID=prot_H-paniculata_contig1406.2483.1|Name=mRNA_H-paniculata_contig1406.2483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MVAGSKPNRINATVKKWKRKRKASLVVEHMEVEAVCALVAGARRCGVQSS
SSNRNGSGRLVLSREEAEAEAVCAPPDGACGVCNEIQFLCGRTGTGQPYC
RK*
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mRNA from alignment at H-paniculata_contig1406:16382..16768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1406.2483.1 ID=mRNA_H-paniculata_contig1406.2483.1|Name=mRNA_H-paniculata_contig1406.2483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig1406:16382..16768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACGGTTACCGGGTAGTGGCGGTTTTGTCGGTTCAGGTGGAAATGGGGT
GGGGCGGAAGCAGTTTTTGATATGGTTGCGGGAAGCAAACCCAATAGAAT
TAATGCGACGGTAAAGAAATGGAAGCGGAAGCGGAAGGCGTCTCTTGTAG
TGGAACATATGGAAGTGGAGGCGGTTTGTGCCTTGGTCGCGGGAGCAAGA
CGATGTGGAGTTCAAAGTTCTTCAAGTAACAGAAACGGAAGTGGAAGGCT
CGTCTTATCGCGTGAAGAGGCGGAAGCGGAGGCGGTTTGTGCCCCACCCG
ACGGGGCGTGCGGTGTATGCAATGAAATACAGTTTCTCTGTGGCAGAACG
GGAACGGGGCAGCCTTATTGTAGAAAGTAGTATCAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1406:16382..16768+

>mRNA_H-paniculata_contig1406.2483.1 ID=mRNA_H-paniculata_contig1406.2483.1|Name=mRNA_H-paniculata_contig1406.2483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig1406:16382..16768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGCGGGAAGCAAACCCAATAGAATTAATGCGACGGTAAAGAAATG
GAAGCGGAAGCGGAAGGCGTCTCTTGTAGTGGAACATATGGAAGTGGAGG
CGGTTTGTGCCTTGGTCGCGGGAGCAAGACGATGTGGAGTTCAAAGTTCT
TCAAGTAACAGAAACGGAAGTGGAAGGCTCGTCTTATCGCGTGAAGAGGC
GGAAGCGGAGGCGGTTTGTGCCCCACCCGACGGGGCGTGCGGTGTATGCA
ATGAAATACAGTTTCTCTGTGGCAGAACGGGAACGGGGCAGCCTTATTGT
AGAAAGTAGATGGTTGCGGGAAGCAAACCCAATAGAATTAATGCGACGGT
AAAGAAATGGAAGCGGAAGCGGAAGGCGTCTCTTGTAGTGGAACATATGG
AAGTGGAGGCGGTTTGTGCCTTGGTCGCGGGAGCAAGACGATGTGGAGTT
CAAAGTTCTTCAAGTAACAGAAACGGAAGTGGAAGGCTCGTCTTATCGCG
TGAAGAGGCGGAAGCGGAGGCGGTTTGTGCCCCACCCGACGGGGCGTGCG
GTGTATGCAATGAAATACAGTTTCTCTGTGGCAGAACGGGAACGGGGCAG
CCTTATTGTAGAAAGTAG
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