mRNA_H-paniculata_contig14056.2479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14056.2479.1
Unique NamemRNA_H-paniculata_contig14056.2479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14056.2479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14056contigH-paniculata_contig14056:3988..4805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size818
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14056.2479.1prot_H-paniculata_contig14056.2479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14056 4168..4647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.9079785-UTR-H-paniculata_contig14056:3987..41671622929119.9079785-UTR-H-paniculata_contig14056:3987..4167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14056 3988..4167 +
1691480738.3619034-UTR-H-paniculata_contig14056:3987..41671691480738.3619034-UTR-H-paniculata_contig14056:3987..4167Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14056 3988..4167 +
1622929119.9389575-UTR-H-paniculata_contig14056:4647..48051622929119.9389575-UTR-H-paniculata_contig14056:4647..4805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14056 4648..4805 +
1691480738.3788393-UTR-H-paniculata_contig14056:4647..48051691480738.3788393-UTR-H-paniculata_contig14056:4647..4805Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14056 4648..4805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.9214337-CDS-H-paniculata_contig14056:4167..46471622929119.9214337-CDS-H-paniculata_contig14056:4167..4647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14056 4168..4647 +
1691480738.3702013-CDS-H-paniculata_contig14056:4167..46471691480738.3702013-CDS-H-paniculata_contig14056:4167..4647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14056 4168..4647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14056.2479.1

>prot_H-paniculata_contig14056.2479.1 ID=prot_H-paniculata_contig14056.2479.1|Name=mRNA_H-paniculata_contig14056.2479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MQPSPSSPLAPPSACSRTVPPATAASPFSAVAGAPSPVGSSPPALASPAP
DPQLPPCTALDRTGIVDVRNAVSSCGSLATASVRASGGGLFPQAYDSAHS
FVDLLSFVARLFLLLKATPVFAAIAISSMYAKILWRRGSAIGAEMAVFSH
PLHSSQSLS*
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mRNA from alignment at H-paniculata_contig14056:3988..4805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14056.2479.1 ID=mRNA_H-paniculata_contig14056.2479.1|Name=mRNA_H-paniculata_contig14056.2479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=818bp|location=Sequence derived from alignment at H-paniculata_contig14056:3988..4805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATCCTAACCCTAACTCCAGACTAGATGCGCTTTCACACGTATGCAAT
AGCGCCAATTCCACACTCTACACCAATCCACGCCCCCGTACATTTCGTTC
AGACTGAAAGCATGAAAAATCTCTTCCACATCGATGGAACGCCATGACTG
GGACCATCCCACACTTAATCGACCGCTATTATGCAACCCTCTCCTTCGTC
CCCGTTGGCTCCGCCATCGGCGTGCTCTCGGACAGTTCCGCCTGCTACAG
CTGCATCGCCCTTCTCCGCAGTCGCCGGCGCTCCGTCACCCGTAGGCTCG
TCACCGCCGGCGCTGGCCTCACCTGCCCCTGATCCGCAACTCCCACCTTG
TACAGCACTTGACAGAACGGGAATTGTCGATGTGCGCAATGCCGTCAGCA
GCTGTGGCAGCCTGGCCACAGCCTCAGTAAGGGCTTCGGGGGGAGGGCTC
TTCCCGCAAGCATACGATTCCGCGCACTCTTTCGTGGACCTCCTCAGCTT
TGTCGCGCGCCTCTTTTTGTTGCTGAAAGCTACCCCTGTCTTTGCCGCAA
TTGCAATATCCTCGATGTACGCAAAAATCTTGTGGCGTCGAGGGTCGGCC
ATAGGGGCAGAGATGGCAGTATTTTCTCATCCGCTACACTCTTCTCAGTC
ACTGTCGTAGATCAACCCTCTTCATCCCCTCGACGTCATTTCAACTCCCT
TCGATTGGAAGACTCGCCCGCGTCCTTATTCAGGCGCAATGACATAACCG
ACATACTTCCCGAGCCCGTCCTTGTCGCGGGGCTTTCTGGTGTGGGAGAA
ATTTGACCCTTGTTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig14056:3988..4805+

>mRNA_H-paniculata_contig14056.2479.1 ID=mRNA_H-paniculata_contig14056.2479.1|Name=mRNA_H-paniculata_contig14056.2479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig14056:3988..4805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACCCTCTCCTTCGTCCCCGTTGGCTCCGCCATCGGCGTGCTCTCG
GACAGTTCCGCCTGCTACAGCTGCATCGCCCTTCTCCGCAGTCGCCGGCG
CTCCGTCACCCGTAGGCTCGTCACCGCCGGCGCTGGCCTCACCTGCCCCT
GATCCGCAACTCCCACCTTGTACAGCACTTGACAGAACGGGAATTGTCGA
TGTGCGCAATGCCGTCAGCAGCTGTGGCAGCCTGGCCACAGCCTCAGTAA
GGGCTTCGGGGGGAGGGCTCTTCCCGCAAGCATACGATTCCGCGCACTCT
TTCGTGGACCTCCTCAGCTTTGTCGCGCGCCTCTTTTTGTTGCTGAAAGC
TACCCCTGTCTTTGCCGCAATTGCAATATCCTCGATGTACGCAAAAATCT
TGTGGCGTCGAGGGTCGGCCATAGGGGCAGAGATGGCAGTATTTTCTCAT
CCGCTACACTCTTCTCAGTCACTGTCGTAGATGCAACCCTCTCCTTCGTC
CCCGTTGGCTCCGCCATCGGCGTGCTCTCGGACAGTTCCGCCTGCTACAG
CTGCATCGCCCTTCTCCGCAGTCGCCGGCGCTCCGTCACCCGTAGGCTCG
TCACCGCCGGCGCTGGCCTCACCTGCCCCTGATCCGCAACTCCCACCTTG
TACAGCACTTGACAGAACGGGAATTGTCGATGTGCGCAATGCCGTCAGCA
GCTGTGGCAGCCTGGCCACAGCCTCAGTAAGGGCTTCGGGGGGAGGGCTC
TTCCCGCAAGCATACGATTCCGCGCACTCTTTCGTGGACCTCCTCAGCTT
TGTCGCGCGCCTCTTTTTGTTGCTGAAAGCTACCCCTGTCTTTGCCGCAA
TTGCAATATCCTCGATGTACGCAAAAATCTTGTGGCGTCGAGGGTCGGCC
ATAGGGGCAGAGATGGCAGTATTTTCTCATCCGCTACACTCTTCTCAGTC
ACTGTCGTAG
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