mRNA_H-paniculata_contig14012.2453.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14012.2453.1
Unique NamemRNA_H-paniculata_contig14012.2453.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 9.520e-73
Identity = 165/276 (59.78%), Postives = 182/276 (65.94%), Query Frame = 2
Query:  179 MADVLNLDSRQRKLQKEQQERRDAAXXXXXXXXXXXXXXXXXXXXXXEQIRQRKLEQRXXXXXXXXXXXADQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSC---GITESSGQLVGLPPAVA--------TTHAGVLEFVADEGTIGLPRKVVLSLL--AEQTVPRESSGATDGGGGE------QTTMLKKLGIVAIRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLK 949
            MAD LNLDSR  KL+KEQQ+RRDAA                     X           XXXXXXXXXXX DQIRT GI YKESLL V A+GEGDK+LLPPSAL+ LSRQDAV +GPMLFEL+C   G   +S Q     PA+         TTHAGVLEFVADEGTIGLPRKVVLSLL  A   VP  +S        +      +   ++ L  V +RYVRLAKATFARVVPETVGLSQVSELRAMLEHNM+ HATLT+GD LSVWRRGKEF LK
Sbjct:    1 MADFLNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLK 276          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.370e-41
Identity = 95/207 (45.89%), Postives = 123/207 (59.42%), Query Frame = 2
Query:  401 TGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVVLSLLAEQTVPRESSGA-----TDGGGGEQTTMLKKLGI-----VAIRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLKVS*R*LQPTSVVRV 991
            T GI Y   L P    GEGDK++LPPSAL++L++QDA+++GPMLF+LS  +     +   LP     THAGVLEF A++G IGLP KV  SL+AE    RE          +G GGE+              V ++YVRL K T+A+V P T  L  V EL+ MLE N+Q HATL+ GD L VW RG+ F L+V+   L+PT  V V
Sbjct:   71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQLSL-LPAEGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLVAEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTG--LEPTQAVTV 274          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: A0A7S3XVE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVE0_HETAK)

HSP 1 Score: 115 bits (289), Expect = 5.420e-27
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 2
Query:  590 AVATTHAGVLEFVADEGTIGLPRKVVLSL-LAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLKVS*R*LQPTSVVRV 991
            A  TTH GVLEF A+EG +GLP KV+ SL +A +    +  G      G+          V I+Y+RL KATFA++ PE  GLSQ+ E+RA+LEHNM+ HATL++GD+L VW RGK F  +V    L+P +   V
Sbjct:   11 AAGTTHCGVLEFTAEEGCVGLPPKVLASLGIAPEQDNTQHQGVAPSSVGQ----------VQIKYIRLEKATFAKIRPEKAGLSQIDEIRAVLEHNMRNHATLSLGDKLIVWFRGKAFECEVLE--LRPAAACTV 133          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: T0RDP2_SAPDV (UBX domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RDP2_SAPDV)

HSP 1 Score: 120 bits (300), Expect = 8.570e-26
Identity = 111/270 (41.11%), Postives = 150/270 (55.56%), Query Frame = 2
Query:  191 LNLDSRQRKLQKEQQERRDAAXXXXXXXXXXXXXXXXXXXXXXEQIRQRKLEQRXXXXXXXXXXXADQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVV--LSLLAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLKVS*R*LQPTSVVRV 991
             ++ SR RKL KEQ+ RR+AA   XXXXXXXXXX          + ++RK EQ  XXXXXXXXX  D+  TGGI YK++L  VA + +GDK+ LP SAL++L+ Q+A+ MG + FEL    T  S          ATTHA VLEFVADEGTIG+P K+   L LL   +V                        + +R+VRLA+  F ++ P   G      +L+A+LE  ++ H T+T GD L V + G  F + V  R + P   V++
Sbjct:    3 FDVGSRARKLAKEQEARREAARKKXXXXXXXXXXAEKLRVEMELESQRRKAEQLQXXXXXXXXXLEDERVTGGIAYKQTLRAVAIDNDGDKITLPVSALEALNPQNALDMGVLSFEL----THLS----------ATTHASVLEFVADEGTIGIPPKIAKSLDLLTHDSVA-----------------------IGVRFVRLARGRFVQLQPLGDGFGDRQLDLKALLERTLKNHTTITQGDILLVRQGGVTFDIAV--RQVLPEPQVQI 233          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: A0A1V9YQB9_9STRA (UBX domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQB9_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.580e-25
Identity = 106/268 (39.55%), Postives = 152/268 (56.72%), Query Frame = 2
Query:  191 LNLDSRQRKLQKEQQERRDAAXXXXXXXXXXXXXXXXXXXXXXEQIRQRKLEQRXXXXXXXXXXXADQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVVLSLLAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLKVS*R*LQPTSVVRV 991
             ++ SR +KL KEQ+ RR+AA  XXXXXXXXXXXXXXXXXXXX + ++RK E              ++  TGGI Y+++L  V  + +GDK+ LP SAL++L+ Q+A+ MG + FEL+C            P A   THA VLEFVADEG+IG+P K+ +SL   + +P +S                    + +R+VRLAK  F ++ P   G      + +A+LE  ++ H TLT GD L V + G  F + V  R ++P   V++
Sbjct:    3 FDVGSRGKKLAKEQEARREAARKXXXXXXXXXXXXXXXXXXXXXESQRRKAELLERAAQEELDRLEEERVTGGISYRKTLRAVPIDNDGDKITLPVSALEALNPQNALDMGVLSFELTC------------PLATTKTHASVLEFVADEGSIGIPPKIAMSL---RLMPLDSVD------------------IDVRFVRLAKGQFVQLQPLADGFGDRQLDFKALLERTLKTHTTLTEGDILLVRQGGVTFDVAV--RAIRPEPQVKI 235          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: F0W152_9STRA (Uncharacterized protein AlNc14C412G11460 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W152_9STRA)

HSP 1 Score: 119 bits (297), Expect = 2.660e-25
Identity = 71/189 (37.57%), Postives = 101/189 (53.44%), Query Frame = 2
Query:  389 DQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVVLSLLAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGL-SQVSELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLKV 952
            +++RT GIHY  SL PV    +GD + LPPSAL+ L+ Q+A  +G   FELS         L  + P +  THA VLEF A+E TIG+P KV   LL  Q+VP+                      + IR+VRL +  FAR  P+  G  ++  +L+ +LE ++ +H TLT+GD + V    K F + V
Sbjct:   69 EELRTAGIHYSCSLKPVPISSDGDLITLPPSALEELTAQEAFRVGKFTFELSV-------MLPNVAPCLQVTHASVLEFTAEEETIGVPPKVARCLLFSQSVPKS---------------------IQIRFVRLERGLFARFQPKEEGFGAREIDLKLVLERSLHRHTTLTIGDTVLVRHGRKTFEISV 229          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: A0A3M6VL54_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL54_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.700e-25
Identity = 92/273 (33.70%), Postives = 134/273 (49.08%), Query Frame = 2
Query:  191 LNLDSRQRKLQKEQQERRDAAXXXXXXXXXXXXXXXXXXXXXXEQIRQRKLEQRXXXXXXXXXXXADQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCG---ITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVVLSLLAEQT-VPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGL-SQVSELRAMLEHNMQKHATLTMGDRLSVWRRGKE-FGLKVS*R*LQPTSVVRV 991
            L+L+SR  K  +EQ +RR+                        +  +Q+++E+             +Q  TGGI Y + L PV    +GDK+ LP SAL+ L+ Q+A+ +G   FELS     +T++SG+          THAGVLEFVADEGT+GLP KV  SL    T +P                     G + +R+VRL K TFA + P+  G   +  + + MLE +++ H TLT GD L + R GKE F + VS   L+P   + +
Sbjct:    3 LDLNSRNVKWNREQNKRREQIKRKIEKERRDSAVAAKAHEELEKMQQQKRVERNAELERQEQQALEEQRITGGIKYLQQLRPVPTTEDGDKITLPVSALEELNPQNALELGVFTFELSFEDQYVTQTSGETT----IKRQTHAGVLEFVADEGTVGLPPKVAASLFKYATEIP---------------------GSIQVRFVRLEKGTFASLQPKGNGFCDRQIDFKHMLERSLKTHTTLTEGDVLFI-RHGKETFEVLVSG--LKPERAINI 247          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: M4BJ97_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJ97_HYAAE)

HSP 1 Score: 113 bits (283), Expect = 4.470e-25
Identity = 84/250 (33.60%), Postives = 124/250 (49.60%), Query Frame = 2
Query:  191 LNLDSRQRKLQKEQQERRDAAXXXXXXXXXXXXXXXXXXXXXXEQIRQRKLEQRXXXXXXXXXXXADQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVVLSLLAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMQKHATLTMGDRLSVWRRGKE 937
            ++L+SR  K  +EQ++RR+ A                         +Q+++E+             +Q  TGGI Y + L P    G+GDK+ LP SAL++L+ Q+A+ +G   FEL   +TE   +L  +      THAGVLEFVA+EGT+GLP KV  SL  +    +E   AT                + +R+V+L +  FAR+ P   G      +L+ +LE  +Q H TLT GD L V R G+E
Sbjct:    3 VDLNSRNAKWNREQKKRREQARCKIEAERQKRVAAAKAREALESLQQQKRVERLAESERQAEQLLEEQRLTGGIKYVQELRPFPTVGDGDKITLPVSALEALNPQNALELGVFTFEL--WVTEMGTELSEVGTVKRRTHAGVLEFVAEEGTVGLPPKVAASLFRQM---KEQPPAT----------------IHVRFVQLEQGKFARLQPRGDGFGDRQIDLKHLLECALQTHTTLTEGDVLFV-RHGRE 230          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: A0A0W8CLD7_PHYNI (Ubiquitin fusion degradation protein 1 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CLD7_PHYNI)

HSP 1 Score: 116 bits (290), Expect = 2.270e-24
Identity = 89/268 (33.21%), Postives = 126/268 (47.01%), Query Frame = 2
Query:  191 LNLDSRQRKLQKEQQERRDAAXXXXXXXXXXXXXXXXXXXXXXEQIRQRKLEQRXXXXXXXXXXXADQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVVLSLLAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLKVS*R*LQPTSVVRV 991
            L+L+SR  K  +EQ +RR+ A                      +   Q+++E+             +Q  TGGI Y + L PV   G+GDK+ LP SAL+ L+ Q+A+ +G   FELS    +  G+      A   THAGVLEFVADEGT+GLP KV  SL       R +    D               + +R+VRL K  FA + P   G      + + MLE +++ H TLT GD L V R G+E   +V    L+P   + +
Sbjct:    3 LDLNSRNAKWNREQNKRREQAKRKIETERRKRAAAAKASEELEKLQMQKRVERIAELERQEQQALEEQRLTGGIRYLKQLRPVPTTGDGDKIALPVSALEELNPQNALELGVFTFELSFDEDQQGGEA---SIAKRQTHAGVLEFVADEGTVGLPPKVAASLF------RHTKELPDS--------------IQVRFVRLEKGKFASLQPRGEGFGDRQIDFKHMLERSLKAHTTLTEGDVLFV-RHGRET-FEVLVAELKPERAINI 245          
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Match: K3WWI9_GLOUD (UBX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWI9_GLOUD)

HSP 1 Score: 115 bits (289), Expect = 3.350e-24
Identity = 94/283 (33.22%), Postives = 134/283 (47.35%), Query Frame = 2
Query:  191 LNLDSRQRKLQKEQQERRDAAXXXXXXXXXXXXXXXXXXXXXXEQIRQRKLEQRXXXXXXXXXXXADQIRTGGIHYKESLLPVAAEGEGDKVLLPPSALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFVADEGTIGLPRKVVLSLLAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMQKHATLTMGDRLSVWRRGKEFGLKVS*R*LQPTSVVRV*MYSVR*CLL*EEEL 1036
            ++L++R  K +KE+Q+RRDAA                          Q+     XX          +Q  TGGI Y + L PV A  +GDK+ LP SAL+ L+ Q+A  +G   FEL   + E       L      THAGVLEFVA+EGT+GLP KV  SL                 GG   ++ +    + ++Y+RL K  FA + P  VG  +   + + +LE +++ H TLT+GD L V R GKE   +V    LQP + V +    +   LL  E +
Sbjct:    3 MDLNTRGAKWKKEEQKRRDAAKRKLQTEQLKRAAADKVQREMERVQAQKXXXXXXXQAQLEELALEEQRVTGGIKYLQRLRPVPAVTDGDKITLPVSALEELNPQNAHELGVFTFEL---LYEDP-----LTQTTRKTHAGVLEFVAEEGTVGLPPKVAASLFRNL-------------GGSSNSVGQVPEAIQVKYIRLEKGKFASLQPRGVGFGEREIDFKKILERSLKAHTTLTVGDVLFV-RHGKET-FEVLVAELQPEAAVNILNTDLEVALLPSEAI 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14012.2453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT74_ECTSI9.520e-7359.78UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CT31_9STRA7.370e-4145.89UBX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S3XVE0_HETAK5.420e-2746.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
T0RDP2_SAPDV8.570e-2641.11UBX domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1V9YQB9_9STRA1.580e-2539.55UBX domain-containing protein n=1 Tax=Achlya hypog... [more]
F0W152_9STRA2.660e-2537.57Uncharacterized protein AlNc14C412G11460 n=1 Tax=A... [more]
A0A3M6VL54_9STRA3.700e-2533.70Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
M4BJ97_HYAAE4.470e-2533.60Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0W8CLD7_PHYNI2.270e-2433.21Ubiquitin fusion degradation protein 1 n=9 Tax=Phy... [more]
K3WWI9_GLOUD3.350e-2433.22UBX domain-containing protein n=1 Tax=Globisporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14012contigH-paniculata_contig14012:1108..5742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score249.6
Seed ortholog evalue1.6e-63
Seed eggNOG ortholog2880.D7FT74
Preferred nameubxn8
KEGG koko:K14016,ko:K18726
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1363@1,KOG1363@2759,KOG1816@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons2
Model size1413
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14012.2453.1prot_H-paniculata_contig14012.2453.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14012 1286..5287 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.8954825-UTR-H-paniculata_contig14012:1107..12851622929113.8954825-UTR-H-paniculata_contig14012:1107..1285Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14012 1108..1285 +
1691480736.7727702-UTR-H-paniculata_contig14012:1107..12851691480736.7727702-UTR-H-paniculata_contig14012:1107..1285Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14012 1108..1285 +
1622929113.9433038-UTR-H-paniculata_contig14012:5287..57421622929113.9433038-UTR-H-paniculata_contig14012:5287..5742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14012 5288..5742 +
1691480736.8088195-UTR-H-paniculata_contig14012:5287..57421691480736.8088195-UTR-H-paniculata_contig14012:5287..5742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14012 5288..5742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.9114423-CDS-H-paniculata_contig14012:1285..14741622929113.9114423-CDS-H-paniculata_contig14012:1285..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14012 1286..1474 +
1691480736.7849152-CDS-H-paniculata_contig14012:1285..14741691480736.7849152-CDS-H-paniculata_contig14012:1285..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14012 1286..1474 +
1622929113.9241593-CDS-H-paniculata_contig14012:4696..52871622929113.9241593-CDS-H-paniculata_contig14012:4696..5287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14012 4697..5287 +
1691480736.7961414-CDS-H-paniculata_contig14012:4696..52871691480736.7961414-CDS-H-paniculata_contig14012:4696..5287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14012 4697..5287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14012.2453.1

>prot_H-paniculata_contig14012.2453.1 ID=prot_H-paniculata_contig14012.2453.1|Name=mRNA_H-paniculata_contig14012.2453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
MADVLNLDSRQRKLQKEQQERRDAARRRIQKDKSTREAAARDQNRIDEQI
RQRKLEQRRKEEEERRKEEADQIRTGGIHYKESLLPVAAEGEGDKVLLPP
SALDSLSRQDAVSMGPMLFELSCGITESSGQLVGLPPAVATTHAGVLEFV
ADEGTIGLPRKVVLSLLAEQTVPRESSGATDGGGGEQTTMLKKLGIVAIR
YVRLAKATFARVVPETVGLSQVSELRAMLEHNMQKHATLTMGDRLSVWRR
GKEFGLKVS*
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mRNA from alignment at H-paniculata_contig14012:1108..5742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14012.2453.1 ID=mRNA_H-paniculata_contig14012.2453.1|Name=mRNA_H-paniculata_contig14012.2453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4635bp|location=Sequence derived from alignment at H-paniculata_contig14012:1108..5742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTATTCTCTAGAACAGGAGCTCTCTAGCTGGAGTGTCTCAACAACCGAC AGCGCTGCACACACGAGGAATTGTTTTGATAAACCCACGTGACAGCACAC ACGAACTCAATCGCGATAACAGGCTGAGCTGTTCGTGGACCTACAAACTC TCGTAGTGGGCGGAATACAGGCGGACAAATGGCTGACGTTTTAAATCTCG ATAGCCGACAGAGAAAGCTTCAAAAGGAGCAGCAGGAACGTCGAGACGCG GCTAGACGTCGAATACAGAAGGATAAGAGCACCAGGGAGGCGGCTGCAAG GGACCAGAACAGAATCGATGAGCAGATAAGGCAGAGGAAGCTAGAGCAGC GGAGGAAGGAGGAAGAGGTAGATTCTTAGGTTGAACCACTTCAACTCAAT TTCTACTGTCGCTTATATTAATAGCATAAAACTGCCGTACAGCTCGCCCA CAAGATGTACTGCATCCTACCATCGCAGCACGACGTACATACTACGCTAT ATTTTATAAGGATGTTGTCGAGCAACGGTGTAGTCCAGTAAACGTTAAAT TTTCCCTTTGCTAGTACACCCCAAAGTGAATGCCCCGCGTTGGATTGTAG TGCTTCGGAAGCGTTGCACATTACACGCTGATTGATTGATTAGTCCGGGC TTAAGCTTGCTCTGTCAACTGCCCGTCTGTCACCCCGGTGTCTAAACTTG CATGTGGTGTGGATTACGAGCAGTAGATTGAACTTTGGGATGAAAGTAAT GCTAGCCGTGTTGTGATTAGACGGCGTCCGGTTTAAACGCTCACATCTCG AACACTATGACAACATAAGCAGCAATACGTTGCACCAGGGCTGCACACAG CAATCACCAGGACTTCATACAGAATGCTCACGGGATGGGGATGGGGATGG GTTGAGATGGGACGGGGTGGAGACAGCACGGGATTGGTGTCCCGTTTCGT CGGTTTTGACGAACAGGATCAATGCCCCGTCTTGTCCCGCCCGTCTCTTG AAGGACGCGGTGGAATTCCGTCGGATCCCGTGCGGTGACGGTACCCGACC GGACGCCACCTCTAAATATGATCCATTCTCATCCCGCCCTGTCTCTTCAC CTCACGACCCTGTCCCGTCCCGTCGAAATATGAATTACCCTCTTGTTCTA TCCCATGAAGATAAGGATCTCCCTTTCCCGTCACGTCGCGCAAAGTACGA CCTCTGTTCCGTCCTGTGGTGCTGTGTAGAGCTCTGCAATCAACCCTTTA GGGTTGCAAGCAATGACTACAGAAGTTCACTGACTTGTGACCCGCCAATA AAAAATTGGTGAGTATAACCCCTCTCATGGACTTTCACTTTGCTTTCGAA ACTTCTAGCTTGACTTTTATTTTAAAATATGCAGTGTATTTGTAAGCTGG GTTTTGAAAGAACACTGCCCTCTTTTACCTTCACGGACTGTATATATTCG CTCTATCTCATGAGTCTAATCAATGGTGGTTTTTCAGTGACAGCTTGTGA TATTTGAAATTCACAAAACGTACAGTATATCGTTCTAAAGCCTTGGATTT CAGCTGTCTCTTTGGCATCGGACATGTAGGTTTCTGACTAGAGCATGTGC CCTTATCATGGAATCGATTGTAGGGGGGGGGATTTCGTTGGGGTTTTTTC AACTTAAACCCTCCGAGAACCCGCCGCGTTCTTCGGTGCATGAAAGCACA TATATGCACACAACGCATACCCGCACGCAGCCAATGACGGACCATGAAAG TCTATCGGTCGACCCTGCTTGGTGGAGGGAAGGGGGGGGGGGACATGGAG TATGTAATGCAGCCTGCACAGTCACCAGATCTCATCATTAACGACCTGTT TTATCACCTTCGAGTCTGGGGCCTGGAGGGAGCAGCACCTTGACACTGTT GAGAATAGTACGATGAGAAAACGCTAGAGAGGGTGTGGTGGTGCCTGTTT AACAGGTAGAACTAGGTGTTGAAGGTGTTGAGGAAAAGGACTTCGAAATG GAACACACCGCGGTTGAATCGAGGCAGAAAAGGGGGGATTTGCTTGTACA CAGCAAACAATTCAAGACGCATTCCACGCTGCGCTCGATTGGTGGTGTGA CGTGGAGTGGAGTGGAGTGAACCAGAGTGACATGGGGAATAATTGAGACA AGCGCCAAATATTCCAAAAGATCCAATGCAACTATGAGACAAGAGAGCAG AAACTCACCCAAGCTTTGGCTGCGCCGAGTTTCACCAGTTTGTGTTTTGG GTGGATGCAGTCGATGCCGACAGAAGAATGGGCGAAAACACCAAGTGCAG GATCACAACGGTACCTAACTCACCGGGAGGAACTTCGTTTCATTCAACGG TAGCTCCTGAGAGACTTCGAACTCGAACAGACACCATGGTCAAAGTATTT ATCATTTGGCCCTCAGGTCTCTTATGAGGTATGAAACGCGTTCGAGGTTC GTGGTGCTGTAGTCCGCGCGACATTTTCAAAGGTTCATGGGGGATTCCAT GATCCATCGTCACGTTTACGGAAAGTTGTCATCAGGTCTCGTGATTATAA AAATAATCGGCTTGTAAAAATACATCAAAACTCGTTCTGTGTGACGCTTC AGAGCACAAACCAACTGCTGGGAGTGCGATGACGCGCAGGTGGTCAACTT TTGCAAGAGGCATTAACCCTTGTTCGAGAGCGTGCTAAATGATGCCCAAA ACATCATTTTTGGGACGGTTGGAGTTAGTCCGTTGGGCTTGTTGTGTCCC AAAACCCATGCGAACAAAACTGAGTAATCTAAAACCCACATGTTCGCATT TTTGTTGTGTTCCCCGCTAGCCAAAGACGGATCATTTGTTCGTACTATTT GTTTTTCCAATCCATATGGAACGCAACACCGTGCGTGTATGTTGATCGGC ATACGTGAAAAGTGAGTATTCGCGAAGAACGAGTATATCAGGTCTTTTTA CCCCGAGAAATAGGTTTCGCGACGTACGTAAAAGCGCTGAGCAGGAACTG CATCAGAGTGCAGTTGTACTGTGACATCTGTACTCAAGGTTGTAGTGTTT CGCACTCTCTGCGCGGCAGGTGCTGCATTTGGTATTGCACTGTGCCTAAA GTATCGACTTTTGATTATTGCGATCACGTTACGCCGCCACACACGCTTGT CGAGCCTAAAGAGGGTATGGCGTACCTTGACCTGAAATGCTCTCGGAAAA CGGAAGTCAATTGAGACGAGCGACACGGTGAAATGCTTCATCACCAAGTA GCCCAATCCTTTGCAGGTGGTGGATTTAAAATTGTAGATTCTTGGGGGAT TTACGGCGCCTGGATTTGGTGCATTCACCAAGAACTTTGCTCTATTTTGT GCGGGGAATGAACTCTACTGAATCTTCTTCTTGCCTTGTCGTTCTATCTT ATTTACCGGGTGTCATGGCTATCACAACAACGGAGTCTACCCTGTTCTCA CAAGTGTGAAATCGTCGAATCAGCGTTGGCTTTGTTGTGTCAACAATATT TCTTGGCAACTGATGACCATATGTAGTGCGAATGATGCTTGTTTGGTTGC CGTTTTATTCGATATCCACGTGCGCACACATTGGCTCAGGAGCGAAGAAA AGAAGAGGCCGACCAGATTCGCACTGGGGGTATCCATTACAAAGAGTCAC TTCTTCCAGTAGCGGCAGAGGGTGAGGGCGACAAGGTGCTCCTTCCGCCA TCCGCGTTGGACTCTCTCTCTCGCCAGGATGCCGTCAGCATGGGGCCGAT GCTGTTCGAGCTAAGCTGTGGCATCACAGAAAGTAGTGGACAGTTGGTGG GGTTACCTCCAGCGGTGGCAACGACCCACGCAGGTGTGCTAGAATTTGTC GCTGACGAGGGAACCATTGGGTTGCCTCGAAAAGTTGTTTTGAGCCTTTT AGCCGAGCAGACAGTACCGAGAGAGAGCAGCGGCGCTACCGATGGGGGGG GTGGAGAACAGACAACAATGCTAAAGAAACTTGGGATCGTGGCAATACGC TACGTCCGCCTTGCGAAAGCCACGTTTGCGCGGGTGGTGCCTGAGACAGT CGGTCTCTCACAGGTCTCGGAATTGCGGGCGATGCTGGAGCACAACATGC AAAAGCATGCGACTCTGACGATGGGCGACAGGTTGAGTGTGTGGCGTCGA GGGAAGGAATTTGGCCTCAAGGTGAGCTGAAGGTGACTACAACCGACCTC TGTTGTCAGAGTGTAGATGTACTCGGTAAGGTAATGCTTGTTGTAAGAGG AGGAACTGTGGCAGGGCTCATTTTGACTTAAGTGATCGCCCATGATCGTC TTACGCATTGTAAGAGTAGAACGAATATAAGCCAGATTTGCTCTCACGTC CCAAGTGTGTATTTTCCGTTTCAAAGCAACGCTATATTGTGATAGTTGAA TTTAACAGTGAGGCAGGGCGTGGTGGAACAAATAAACTGGATAATTACAG CCTAGAGCCTAGAGTGTGGAGCGAGTTGGGGAAATTTCACTGAATCGAAG CATTTCAAGAGGTGTCCCCAATGTAGCCCATAGCGTCAGTGCTTATTGAT ACTGGAAATTTTCAGTACGTCAGTGTACCTTCCACTACCACCAGTTAGAT TCCGAAAATACTGAATATTAGAGGGTATCGCCAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig14012:1108..5742+

>mRNA_H-paniculata_contig14012.2453.1 ID=mRNA_H-paniculata_contig14012.2453.1|Name=mRNA_H-paniculata_contig14012.2453.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig14012:1108..5742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGACGTTTTAAATCTCGATAGCCGACAGAGAAAGCTTCAAAAGGA
GCAGCAGGAACGTCGAGACGCGGCTAGACGTCGAATACAGAAGGATAAGA
GCACCAGGGAGGCGGCTGCAAGGGACCAGAACAGAATCGATGAGCAGATA
AGGCAGAGGAAGCTAGAGCAGCGGAGGAAGGAGGAAGAGATGGCTGACGT
TTTAAATCTCGATAGCCGACAGAGAAAGCTTCAAAAGGAGCAGCAGGAAC
GTCGAGACGCGGCTAGACGTCGAATACAGAAGGATAAGAGCACCAGGGAG
GCGGCTGCAAGGGACCAGAACAGAATCGATGAGCAGATAAGGCAGAGGAA
GCTAGAGCAGCGGAGGAAGGAGGAAGAGGAGCGAAGAAAAGAAGAGGCCG
ACCAGATTCGCACTGGGGGTATCCATTACAAAGAGTCACTTCTTCCAGTA
GCGGCAGAGGGTGAGGGCGACAAGGTGCTCCTTCCGCCATCCGCGTTGGA
CTCTCTCTCTCGCCAGGATGCCGTCAGCATGGGGCCGATGCTGTTCGAGC
TAAGCTGTGGCATCACAGAAAGTAGTGGACAGTTGGTGGGGTTACCTCCA
GCGGTGGCAACGACCCACGCAGGTGTGCTAGAATTTGTCGCTGACGAGGG
AACCATTGGGTTGCCTCGAAAAGTTGTTTTGAGCCTTTTAGCCGAGCAGA
CAGTACCGAGAGAGAGCAGCGGCGCTACCGATGGGGGGGGTGGAGAACAG
ACAACAATGCTAAAGAAACTTGGGATCGTGGCAATACGCTACGTCCGCCT
TGCGAAAGCCACGTTTGCGCGGGTGGTGCCTGAGACAGTCGGTCTCTCAC
AGGTCTCGGAATTGCGGGCGATGCTGGAGCACAACATGCAAAAGCATGCG
ACTCTGACGATGGGCGACAGGTTGAGTGTGTGGCGTCGAGGGAAGGAATT
TGGCCTCAAGGTGAGCTGAGAGCGAAGAAAAGAAGAGGCCGACCAGATTC
GCACTGGGGGTATCCATTACAAAGAGTCACTTCTTCCAGTAGCGGCAGAG
GGTGAGGGCGACAAGGTGCTCCTTCCGCCATCCGCGTTGGACTCTCTCTC
TCGCCAGGATGCCGTCAGCATGGGGCCGATGCTGTTCGAGCTAAGCTGTG
GCATCACAGAAAGTAGTGGACAGTTGGTGGGGTTACCTCCAGCGGTGGCA
ACGACCCACGCAGGTGTGCTAGAATTTGTCGCTGACGAGGGAACCATTGG
GTTGCCTCGAAAAGTTGTTTTGAGCCTTTTAGCCGAGCAGACAGTACCGA
GAGAGAGCAGCGGCGCTACCGATGGGGGGGGTGGAGAACAGACAACAATG
CTAAAGAAACTTGGGATCGTGGCAATACGCTACGTCCGCCTTGCGAAAGC
CACGTTTGCGCGGGTGGTGCCTGAGACAGTCGGTCTCTCACAGGTCTCGG
AATTGCGGGCGATGCTGGAGCACAACATGCAAAAGCATGCGACTCTGACG
ATGGGCGACAGGTTGAGTGTGTGGCGTCGAGGGAAGGAATTTGGCCTCAA
GGTGAGCTGA
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