mRNA_H-paniculata_contig14.2444.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14.2444.1
Unique NamemRNA_H-paniculata_contig14.2444.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14.2444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14contigH-paniculata_contig14:69740..70090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-13_004700.1
Exons1
Model size352
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.3819091-CDS-H-paniculata_contig14:69739..700901622929111.3819091-CDS-H-paniculata_contig14:69739..70090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 69740..70090 +
1691480735.748953-CDS-H-paniculata_contig14:69739..700901691480735.748953-CDS-H-paniculata_contig14:69739..70090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 69740..70090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14.2444.1prot_H-paniculata_contig14.2444.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14 69740..70090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14.2444.1

>prot_H-paniculata_contig14.2444.1 ID=prot_H-paniculata_contig14.2444.1|Name=mRNA_H-paniculata_contig14.2444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
LSAVETLTAAAATVEYKPKPSSFAAPVVLAPSIAALAADATTTTMRTAVD
HPPPISRQVEEADARLGGGADQTGQGTLAPVNCSSSAFTSPCPPESPAPG
GSMAQRHQREWMGQPSP
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mRNA from alignment at H-paniculata_contig14:69740..70090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14.2444.1 ID=mRNA_H-paniculata_contig14.2444.1|Name=mRNA_H-paniculata_contig14.2444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig14:69740..70090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATCTGCCGTTGAAACTCTCACCGCGGCCGCGGCGACGGTGGAGTACAA
GCCGAAACCGTCGAGTTTCGCGGCACCGGTTGTTCTAGCGCCATCGATTG
CGGCTTTGGCTGCGGACGCTACCACGACGACGATGAGGACAGCCGTGGAC
CATCCCCCCCCCATCTCCCGGCAGGTGGAAGAGGCGGACGCGAGACTTGG
GGGAGGTGCGGATCAGACGGGACAAGGCACGTTGGCGCCGGTCAATTGCT
CTTCGTCTGCATTTACTTCGCCTTGTCCTCCCGAATCGCCCGCGCCAGGC
GGCAGCATGGCGCAACGGCATCAGAGGGAATGGATGGGACAGCCATCACC
C
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Coding sequence (CDS) from alignment at H-paniculata_contig14:69740..70090+

>mRNA_H-paniculata_contig14.2444.1 ID=mRNA_H-paniculata_contig14.2444.1|Name=mRNA_H-paniculata_contig14.2444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig14:69740..70090+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATCTGCCGTTGAAACTCTCACCGCGGCCGCGGCGACGGTGGAGTACAA
GCCGAAACCGTCGAGTTTCGCGGCACCGGTTGTTCTAGCGCCATCGATTG
CGGCTTTGGCTGCGGACGCTACCACGACGACGATGAGGACAGCCGTGGAC
CATCCCCCCCCCATCTCCCGGCAGGTGGAAGAGGCGGACGCGAGACTTGG
GGGAGGTGCGGATCAGACGGGACAAGGCACGTTGGCGCCGGTCAATTGCT
CTTCGTCTGCATTTACTTCGCCTTGTCCTCCCGAATCGCCCGCGCCAGGC
GGCAGCATGGCGCAACGGCATCAGAGGGAATGGATGGGACAGCCATCACC
CTTATCTGCCGTTGAAACTCTCACCGCGGCCGCGGCGACGGTGGAGTACA
AGCCGAAACCGTCGAGTTTCGCGGCACCGGTTGTTCTAGCGCCATCGATT
GCGGCTTTGGCTGCGGACGCTACCACGACGACGATGAGGACAGCCGTGGA
CCATCCCCCCCCCATCTCCCGGCAGGTGGAAGAGGCGGACGCGAGACTTG
GGGGAGGTGCGGATCAGACGGGACAAGGCACGTTGGCGCCGGTCAATTGC
TCTTCGTCTGCATTTACTTCGCCTTGTCCTCCCGAATCGCCCGCGCCAGG
CGGCAGCATGGCGCAACGGCATCAGAGGGAATGGATGGGACAGCCATCAC
CC
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