mRNA_H-paniculata_contig14.2440.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14.2440.1
Unique NamemRNA_H-paniculata_contig14.2440.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14.2440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14contigH-paniculata_contig14:32382..33356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size199
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.1309853-CDS-H-paniculata_contig14:32382..324351622929111.1309853-CDS-H-paniculata_contig14:32382..32435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 32383..32435 -
1691480735.6761584-CDS-H-paniculata_contig14:32382..324351691480735.6761584-CDS-H-paniculata_contig14:32382..32435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 32383..32435 -
1622929111.1456852-CDS-H-paniculata_contig14:33211..333561622929111.1456852-CDS-H-paniculata_contig14:33211..33356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 33212..33356 -
1691480735.6858032-CDS-H-paniculata_contig14:33211..333561691480735.6858032-CDS-H-paniculata_contig14:33211..33356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 33212..33356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14.2440.1prot_H-paniculata_contig14.2440.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14 32383..33356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14.2440.1

>prot_H-paniculata_contig14.2440.1 ID=prot_H-paniculata_contig14.2440.1|Name=mRNA_H-paniculata_contig14.2440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
LKRRDRQSLEVTVNDDCISLDSTDIVDQKSLAQAEDMHHGQLRAEKNSAE
LKCEALGLAKKELVDA
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mRNA from alignment at H-paniculata_contig14:32382..33356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14.2440.1 ID=mRNA_H-paniculata_contig14.2440.1|Name=mRNA_H-paniculata_contig14.2440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at H-paniculata_contig14:32382..33356- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAACGGCGGGATCGACAATCGCTCGAGGTCACCGTCAATGATGACTG
TATCTCCTTGGACAGCACCGACATCGTGGATCAGAAGAGCCTTGCTCAAG
CGGAGGATATGCACCACGGCCAACTGCGAGCGGAGAAAAATTCGGGTATG
GCACGAATTGGGAACATGTCTTCGAACGGCTCCTTTACAGTGTTTACAGA
GTCTGGATCTCGAGATTTTCGCGCTTGAAAGACGCCTTTATGTTGATGGG
TTTACTGCTGAGCAAACGTGGAGATTACGTAGTAAACAACGAGTTTGCGG
TTAGCATAGGAACTATTAGCATCACTTGGCTAACAGGTTTACGCCACGTG
ATGTCTTGAAACGATCCTCTGGCAAAGTGGATGTTAGAAATTGTGCTTGA
GCGCAGAAACGGGGCTACGAAGAAACAAAGAATCTTGTTGCCTCGCTTGA
TAGAGTATGCGAATGCTGCCGAGACAAGATAAAGCGTGTCGTTCTGTCCG
ATATAGACAAATTCCTTTGCCTTGATCTTGAAATACACTCTGGCTACAGC
ATAGCACGCACTCCCTGCGATTGCATGGTACGTTGCCTCATTCCCAATAA
AGGCAAAGTCCTTCCAGGGGCATGCCATAGACATTCTGCTCTCTTCATTC
CATCGATGCTCGCATTGCCTTGAGTGAGCGAAACACCTTCCGTTTTGGGC
CATTTTCGAAGCCCATGTCCGAACCGTCCGACACGCTTATTATTAATAGT
AACCTTCAACCAAATTGCGCTACTACAGTGTTCGATTCAACTCTGCCCTT
TGAAATAGTCGGCCATTTAGGCTGCCCCTATCGAAACCGTTGTCGTTTGT
ACTGCCGCCGAAATTTCCCCGCCTTCCCCCACTCCACTGCTGGCAACCTG
CGCCCCCTGTTTCTGTCCAAGCCGAGCTTAAGTGCGAGGCTCTGGGCCTC
GCGAAGAAAGAGCTCGTGGACGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig14:32382..33356-

>mRNA_H-paniculata_contig14.2440.1 ID=mRNA_H-paniculata_contig14.2440.1|Name=mRNA_H-paniculata_contig14.2440.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig14:32382..33356- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAACGGCGGGATCGACAATCGCTCGAGGTCACCGTCAATGATGACTG
TATCTCCTTGGACAGCACCGACATCGTGGATCAGAAGAGCCTTGCTCAAG
CGGAGGATATGCACCACGGCCAACTGCGAGCGGAGAAAAATTCGGCTCAA
ACGGCGGGATCGACAATCGCTCGAGGTCACCGTCAATGATGACTGTATCT
CCTTGGACAGCACCGACATCGTGGATCAGAAGAGCCTTGCTCAAGCGGAG
GATATGCACCACGGCCAACTGCGAGCGGAGAAAAATTCGGCCGAGCTTAA
GTGCGAGGCTCTGGGCCTCGCGAAGAAAGAGCTCGTGGACGCTCCGAGCT
TAAGTGCGAGGCTCTGGGCCTCGCGAAGAAAGAGCTCGTGGACGCT
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