mRNA_H-paniculata_contig14.2439.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14.2439.1
Unique NamemRNA_H-paniculata_contig14.2439.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14.2439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14contigH-paniculata_contig14:24037..25043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14.2439.1prot_H-paniculata_contig14.2439.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14 24037..25011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.0525792-CDS-H-paniculata_contig14:24036..242311622929111.0525792-CDS-H-paniculata_contig14:24036..24231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 24037..24231 -
1691480735.650659-CDS-H-paniculata_contig14:24036..242311691480735.650659-CDS-H-paniculata_contig14:24036..24231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 24037..24231 -
1622929111.0694163-CDS-H-paniculata_contig14:24942..250111622929111.0694163-CDS-H-paniculata_contig14:24942..25011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 24943..25011 -
1691480735.6589723-CDS-H-paniculata_contig14:24942..250111691480735.6589723-CDS-H-paniculata_contig14:24942..25011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 24943..25011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.0837793-UTR-H-paniculata_contig14:25011..250431622929111.0837793-UTR-H-paniculata_contig14:25011..25043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14 25012..25043 -
1691480735.6673138-UTR-H-paniculata_contig14:25011..250431691480735.6673138-UTR-H-paniculata_contig14:25011..25043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig14 25012..25043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14.2439.1

>prot_H-paniculata_contig14.2439.1 ID=prot_H-paniculata_contig14.2439.1|Name=mRNA_H-paniculata_contig14.2439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MGNEGSLIWHVTNVVARFRSIAELFDKQMVSPGIQALRLLGDILDRGTFV
IRADEETASGNFEDMFPSWADGGHGGQSSFSLSLDLQP
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mRNA from alignment at H-paniculata_contig14:24037..25043-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14.2439.1 ID=mRNA_H-paniculata_contig14.2439.1|Name=mRNA_H-paniculata_contig14.2439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1007bp|location=Sequence derived from alignment at H-paniculata_contig14:24037..25043- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCGAACTTAGCCAGCGCCGATACGTTGGTCATGGGGAACGAGGGTAGT
CTCATCTGGCACGTCACCAACGTCGTCGCCAGATTCAGGAGCATCGCAGA
GGTGACAACTCAATATGTGTCACTGAGTTGTACAAAGATCGAAAGGAGGT
CCAAATAGGACAATTAACCATTGAAATTGCAGGCGTCTGGCAGGGCCAAA
CAGAGCAAAAAATATACCGACATTAGTGTATTGGTCAAGAATGGAATAGT
CCGGGCTAAGTCGTCGATGTACACGGCGAAAGGAATTTTTCGGGCTGCTC
TGTTTGGTCTACCAGGAAAGCTGTACTGTGTTCGGCGCGGAGGTTTACAG
CGATGAGAAGGTGTTCTGTGTGACGCGTGTGTAATAATGCCGACAGCTCA
CTGTTGTAGAATTCGACGGAAGTTCGGTGCTGCCAAATATGGACAACGCC
GAATTTACAACTTTGGTGAGCGAGAGGGGGCGTAGAATGATATACCTGAG
AAACTTCTCGAGGGGGCGGAAAACTTACACTACTCCCCCCCTCGTGATTA
TCATAATACTATCCCCTATCCAGCATCGTTGGACACCGCTTTGTGAGGTA
TGACACCGGATGATGAGGCCGGTGCGGTATGCGTAAAACACTATCAACAG
CAGAAGCCCGGGGTGTGTTTTCTGGAACGCGTGTTATAATTATCCACAGA
TTCGACATGCCTGAATAGAGCCCGACATTACATTTCAATTGGCGTTCCCG
TATCCGTCGCTGCGTTCTTATCCGTGAACTACACATTCGCATGTGTGTAT
CGGCTTCGCTAGCTCTTCGACAAACAAATGGTATCCCCTGGTATCCAAGC
CCTCCGACTTCTCGGTGATATCCTCGACCGCGGGACATTCGTCATCCGAG
CAGACGAAGAGACAGCATCCGGCAATTTCGAAGATATGTTCCCCAGTTGG
GCGGATGGGGGCCATGGTGGACAATCGTCCTTTTCTCTCTCGCTTGACCT
TCAGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig14:24037..25043-

>mRNA_H-paniculata_contig14.2439.1 ID=mRNA_H-paniculata_contig14.2439.1|Name=mRNA_H-paniculata_contig14.2439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig14:24037..25043- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAACGAGGGTAGTCTCATCTGGCACGTCACCAACGTCGTCGCCAG
ATTCAGGAGCATCGCAGAGATGGGGAACGAGGGTAGTCTCATCTGGCACG
TCACCAACGTCGTCGCCAGATTCAGGAGCATCGCAGAGCTCTTCGACAAA
CAAATGGTATCCCCTGGTATCCAAGCCCTCCGACTTCTCGGTGATATCCT
CGACCGCGGGACATTCGTCATCCGAGCAGACGAAGAGACAGCATCCGGCA
ATTTCGAAGATATGTTCCCCAGTTGGGCGGATGGGGGCCATGGTGGACAA
TCGTCCTTTTCTCTCTCGCTTGACCTTCAGCCGCTCTTCGACAAACAAAT
GGTATCCCCTGGTATCCAAGCCCTCCGACTTCTCGGTGATATCCTCGACC
GCGGGACATTCGTCATCCGAGCAGACGAAGAGACAGCATCCGGCAATTTC
GAAGATATGTTCCCCAGTTGGGCGGATGGGGGCCATGGTGGACAATCGTC
CTTTTCTCTCTCGCTTGACCTTCAGCCG
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