mRNA_H-paniculata_contig14.2438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig14.2438.1 vs. uniprot
Match: A0A7S0DVA6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DVA6_9EUKA) HSP 1 Score: 154 bits (389), Expect = 8.610e-38 Identity = 115/350 (32.86%), Postives = 169/350 (48.29%), Query Frame = 3
Query: 18 MFVIADVHQLSYSTQGTLLGHLRSKVLEREDSDNGNSEWGGNGDVARPDEDERVAGEAVLLVISGKPRQALLNWLSDHVVELPPLPTDALRESVSHALETHYEGATMAIRSETNGGGKSQYIMKQV----ATSRVNCYVRVPVGESFSPRDLHRALASHDVADTSAVPR-AVHLDLGHVPPLDCNTFLFQLLLEGCVRDPVTREVLVRQPNDLFFVEIPNSECDRVAESLHFCNLLPTKTLEVNPDTLDFEIAEMVGPSVQL--------SLDHGLKRVHRWLRAVEKGDLLPDGNGLDPADWQEEETDVAEHGCRFVQKEECFELLRRCCCVEGGPSERPTWAVFRTFV 1028
+F +AD+H L Y+ Q ++L LR + D A LL++SGKPRQ LLN LS +VEL PL +L S++ A + + G T+ + S NGGGKS YIM Q+ A + Y R+P ES + L L+ TS R A H+D+GH+ P + NT LF+LL+ G +++P + V R D++F+EIPNSE ++ AE+L F LLP L V+P+T+ P SLD H +L+A ++ LP G D W + D ++ +ECF LLR P + P++ +F F+
Sbjct: 1890 VFTVADIHALPYTYQVSVLEKLREMLA-----------------------DFGTENAAQLLMVSGKPRQVLLNSLSGQMVELGPLDQKSLHSSLAEACKK-WCGETLCVSSNINGGGKSHYIMSQIGKRQAANERLAYRRIPYHESSTSGTLVARLSKF----TSGRERNAFHIDIGHIIPANANTCLFELLIVGVLKNPESCAVYPRSNKDIYFLEIPNSERNKTAEALRFPALLPKIGLRVSPETMSLINPTFKNPPHNTLIALPNPTSLDPVCYVTH-FLKAYKEQKFLPGGK-FDMT-WNPAKLDP-------LKPDECFNLLREYTTNRSQPGDEPSYLIFDNFI 2201
BLAST of mRNA_H-paniculata_contig14.2438.1 vs. uniprot
Match: A0A7S0H307_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H307_9EUKA) HSP 1 Score: 153 bits (386), Expect = 1.910e-37 Identity = 114/349 (32.66%), Postives = 165/349 (47.28%), Query Frame = 3
Query: 18 MFVIADVHQLSYSTQGTLLGHLRSKVLEREDSDNGNSEWGGNGDVARPDEDERVAGEAVLLVISGKPRQALLNWLSDHVVELPPLPTDALRESVSHALETHYEGATMAIRSETNGGGKSQYIMKQVATSRVN----CYVRVPVGESFSPRDLHRALASHDVADTSAVPRAVHLDLGHVPPLDCNTFLFQLLLEGCVRDPVTREVLVRQPNDLFFVEIPNSECDRVAESLHFCNLLPTKTLEVNPDTLDFEIAEMVGPSVQLSLDH-------GLKRVHRWLRAVEKGDLLPDGNGLDPADWQEEET--DVAEHGCRFVQKEECFELLRRCCCVEGGPSERPTWAVFRTF 1025
+F +AD+H L Y Q ++ +R + S+ A LL +SGK RQ L+N LS H L L LR +V A + H G T ++ S NGGGK+ YI++QVA + Y RVP ES + L R L S VP AVH+D+GHV P D NT LF+LL+ G ++DP V R D+FFVEIPNS D+ A++L +LLP+ L V+ DT+D + L + + V +L+A + +P A W ++ T +VAE + +E F+LLR P++ P++ +F F
Sbjct: 825 VFCVADLHNLDYGMQVGVVARMREMIARYGTSN-----------------------AASLLFVSGKQRQVLVNSLSKHATPLASLDLVTLRAAVKVAADKHC-GQTSSVASVINGGGKTTYILRQVALKQEEGNKFMYRRVPYHESSTAATLVRRLKRFG---HSRVPDAVHIDIGHVIPPDANTRLFELLIVGVIKDPDMCSVYARDKRDMFFVEIPNSTGDKTAKALRIASLLPSVKLTVDGDTMDLRRVSFKNHPLCTELKYQPPDPMEAINYVSNFLKAFKAKKFVPG------ATWDKKWTPRNVAE-----LDAKEAFKLLRIFTANPTQPNDAPSFTIFDNF 1135
BLAST of mRNA_H-paniculata_contig14.2438.1 vs. uniprot
Match: A0A7S0DLQ4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLQ4_9EUKA) HSP 1 Score: 145 bits (366), Expect = 8.130e-35 Identity = 108/349 (30.95%), Postives = 169/349 (48.42%), Query Frame = 3
Query: 18 MFVIADVHQLSYSTQGTLLGHLRSKVLEREDSDNGNSEWGGNGDVARPDEDERVAGEAVLLVISGKPRQALLNWLSDHVVELPPLPTDALRESVSHALETHYEGATMAIRSETNGGGKSQYIMKQVA----TSRVNCYVRVPVGESFSPRDLHRALASHDVADTSAVPRAVHLDLGHVPPLDCNTFLFQLLLEGCVRDPVTREVLVRQPNDLFFVEIPNSECDRVAESLHFCNLLPTKTLEVNPDTLDFEIAEM----VGPSVQLSL-----DHGLKRVHRWLRAVEKGDLLPDGNGLDPADWQEEETDVAEHGCRFVQKEECFELLRRCCCVEGGPSERPTWAVFRTF 1025
+F +ADVH L+Y+ Q +L LR + D A+LL +SGKPRQ LLN LS H+V L PL +L+ ++ +A +TH G T+ + S NG GK+ YI+K+ T Y RV ES + L L+ + VP A H+ +GH+ P + NT LF+LL+ G +++ T +V R D++++EIPNS + A +L FC LLPT+ L + +L + I + ++L L D + VH +L+A ++ GN DP+ W T+ + +E F LL+ + P + P++ +F F
Sbjct: 422 VFCVADVHALNYTKQVAVLDKLREVMA-----------------------DYGTENSALLLFVSGKPRQVLLNTLSAHMVALEPLDEKSLQAALRYATKTHC-GETLCVSSTINGAGKTTYILKEAGMRQRTGDNILYRRVAYHESSTAGTLVDRLSRFNGI---RVPSAFHMHIGHIIPANANTCLFELLIVGVLKNKATCDVYARSNKDVYYLEIPNSAGGKTALALRFCKLLPTQHLRCDAGSLSYIIPVFRNSPLNTRIRLQLQPFSTDPMVYTVH-FLKAFKEKKFQVGGNTFDPS-WDPNLTEAPD-------VKEAFALLKEFTENKRQPGDEPSFIIFDNF 734
BLAST of mRNA_H-paniculata_contig14.2438.1 vs. uniprot
Match: A0A7S3YCC3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YCC3_9EUKA) HSP 1 Score: 113 bits (283), Expect = 6.700e-27 Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = 3
Query: 189 AVLLVISGKPRQALLNWLSDHVVELPPLPTDALRESVSHALETHYEGATMAIRSETNGGGKSQYIMKQVATSRVN----CYVRVPVGESFSPRDLHRALASHDVADTSAVPRAVHLDLGHVPPLDCNTFLFQLLLEGCVRDPVTREVLVRQPNDLFFVEIPNSE 668
A LL++SGKPRQ LLN LS +VEL PL +L S++HA + + G T + S NGGGK+ Y++ Q+ + Y RVP ES + L L+ A T A H+D+GH+ P + NT LF+LL+ G +++P T V R D++++EIPNSE
Sbjct: 1 AQLLMVSGKPRQVLLNSLSGQMVELGPLDQKSLSASLAHACKK-WCGETTCVSSNINGGGKTHYVLSQIGMRQAQNERFAYRRVPYHESSTSGSLVARLSKF--AGTRE-KNAFHIDIGHIIPANANTCLFELLIVGVLKNPETCAVYARSNRDVYYLEIPNSE 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14.2438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig14.2438.1 >prot_H-paniculata_contig14.2438.1 ID=prot_H-paniculata_contig14.2438.1|Name=mRNA_H-paniculata_contig14.2438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=337bp MFVIADVHQLSYSTQGTLLGHLRSKVLEREDSDNGNSEWGGNGDVARPDEback to top mRNA from alignment at H-paniculata_contig14:16402..21535- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig14.2438.1 ID=mRNA_H-paniculata_contig14.2438.1|Name=mRNA_H-paniculata_contig14.2438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5134bp|location=Sequence derived from alignment at H-paniculata_contig14:16402..21535- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig14:16402..21535- >mRNA_H-paniculata_contig14.2438.1 ID=mRNA_H-paniculata_contig14.2438.1|Name=mRNA_H-paniculata_contig14.2438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig14:16402..21535- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |