mRNA_H-paniculata_contig14.2437.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig14.2437.1
Unique NamemRNA_H-paniculata_contig14.2437.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig14.2437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig14contigH-paniculata_contig14:14037..15776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size456
Cds size453
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig14.2437.1prot_H-paniculata_contig14.2437.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig14 14038..15776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.0653684-CDS-H-paniculata_contig14:14037..141381622929112.0653684-CDS-H-paniculata_contig14:14037..14138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 14038..14138 -
1691480735.8963468-CDS-H-paniculata_contig14:14037..141381691480735.8963468-CDS-H-paniculata_contig14:14037..14138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 14038..14138 -
1622929112.0835893-CDS-H-paniculata_contig14:14738..148361622929112.0835893-CDS-H-paniculata_contig14:14738..14836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 14739..14836 -
1691480735.9049027-CDS-H-paniculata_contig14:14738..148361691480735.9049027-CDS-H-paniculata_contig14:14738..14836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 14739..14836 -
1622929112.0950878-CDS-H-paniculata_contig14:15260..154301622929112.0950878-CDS-H-paniculata_contig14:15260..15430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 15261..15430 -
1691480735.9128876-CDS-H-paniculata_contig14:15260..154301691480735.9128876-CDS-H-paniculata_contig14:15260..15430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 15261..15430 -
1622929112.10683-CDS-H-paniculata_contig14:15692..157761622929112.10683-CDS-H-paniculata_contig14:15692..15776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 15693..15776 -
1691480735.9222755-CDS-H-paniculata_contig14:15692..157761691480735.9222755-CDS-H-paniculata_contig14:15692..15776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig14 15693..15776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig14.2437.1

>prot_H-paniculata_contig14.2437.1 ID=prot_H-paniculata_contig14.2437.1|Name=mRNA_H-paniculata_contig14.2437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
RCARCRKYASLPWKDRTRKASCPEMDRKVCPSVDAMARACQRLAARFQVM
AGMSNHPVVVFKTEGKPGLSEISGVDILSMGTHRRLTDMFIQDPLKETLQ
LNGIDFSRDWTSISSEQAVKLLRDIGGVTGLDHTDANTTGSTGYVFTVDN
F
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mRNA from alignment at H-paniculata_contig14:14037..15776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig14.2437.1 ID=mRNA_H-paniculata_contig14.2437.1|Name=mRNA_H-paniculata_contig14.2437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1740bp|location=Sequence derived from alignment at H-paniculata_contig14:14037..15776- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGCGCTCGGTGCCGCAAGTATGCCTCGCTGCCGTGGAAGGATCGGAC
GAGGAAAGCATCTTGCCCGGAGATGGACAGGAAAGTTTGAGAGAAAATAT
TGAAAATGGCATGCTCCGACTTCGTGCCGTCTCTAGGTGTAAGGTCGTCG
TCACATCCAGGCGCTGTCAGCGGGCCTGAGCGATTGGTTATCTCGTCATA
TTCTACTTTTGGAACAATTCCACCAAATAATCTGCGCCCGGTGTGCGTTA
ACGTCGGGTTTCTGCGTTTTCATGATGCACATGTAATCTGTATTAAACTT
TCATGTGTTGCCTCACCACCGACTTTGCGGGCACTACGTCTCTTAGGTTT
GCCCTTCGGTCGACGCTATGGCAAGGGCTTGCCAGCGCCTTGCCGCGAGG
TTTCAGGTTATGGCGGGGATGTCGAATCACCCGGTGGTCGTGTTCAAGAC
CGAGGGAAAACCTGGCCTAAGCGAGATCTCCGGCGTTGATATCCTCAGCA
TGGGCACTCACCGGAGGTATTCAAGAACATGTATTTGTAGTATATTAGTA
TCACTCGGAAGTGCCGAAGGGGGTTAATCAATCGAAGCAGAGCACAACGA
AACTGGTGGTCGTGATTTGAGGCAATCTATCTTCTCCGAACGTTTTGCTG
TCGTTAATGAGAAGCCATGCTTATCTATCTAAATGAGAGCGAGTTATGGA
AGTATCTGGATCCCCTGACCCCCAGCGAAAGAGATGGTGAGTCAGAGCAG
TGATAGTGCGCGCACGACTGACCGCCGCACTCGGGCCGACAACACCGGTT
TCTACTCTGTGTACAAGCCCAGTGCAGTGTAGTGGTACAGATCAAATGGC
TTATCTCCCTACGGTAAGATTGTTGGTCAAACTTAGCACAGGGCGCTGGT
ACTGATATGCCCTACGTTTTCATCGCACCTTGGTCATCAGATTGACGGAT
ATGTTTATTCAGGATCCACTGAAAGAAACCCTTCAGCTGAACGGGATCGA
CTTCAGCCGGGATTGGACTTCCATCTCTAGTGAACAAGGTACGATGCCTG
TTAACACGTACTCCCCCTGTACAGCTTGCTCTGTGTGGCGCGTTTTTCGC
CCTCGGATCCCCATGGGAGCCCACGAGCGCACATGGGTACTCGTCGGTGA
CTCACGGATACCCATACGTCAAAAACCACGAATATCGAGCATCCTCTTTG
TTCGTCTGGCGATAGCACCGCTGGGCATATTCGCGCTTGCATCGATGACA
TATATCTATGCTCAGTAGTTAAGTCTCCGTGACGATGCCGCGTGAGCGCG
TTTGACACTTTTGTGTGTTGATATGTGATATGCAGGAATGCTGTTATCAG
TGCTTCCAAGAAACGCCTGCCAACTGCACAAGGTTTTATTTCCAAATATC
TCACAATACGGTGCTCGCAACACTGACAGGGGAAAAGATACAATGCGGTA
AAATTCCCTTCGTTACAGAATTATTCATTGCTTGGGCTTTTTCTCTGACA
ATTCCAACAGTACAATGTTTAGGATACACACTACCCCTCTCTTCAATATT
CTCGTATTGTCTAACGGTAGCGTTATTTTACTTGTTGCATCGTTGCACCG
GGTCACCGACCAAACTTTTCTTTCTCTGGTTCGAGCAGCTGTCAAGCTCC
TTCGAGATATCGGTGGTGTGACCGGACTCGACCACACGGATGCCAACACA
ACGGGGAGCACCGGTTACGTGTTTACCGTTGACAATTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig14:14037..15776-

>mRNA_H-paniculata_contig14.2437.1 ID=mRNA_H-paniculata_contig14.2437.1|Name=mRNA_H-paniculata_contig14.2437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig14:14037..15776- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGCGCTCGGTGCCGCAAGTATGCCTCGCTGCCGTGGAAGGATCGGAC
GAGGAAAGCATCTTGCCCGGAGATGGACAGGAAACGCTGCGCTCGGTGCC
GCAAGTATGCCTCGCTGCCGTGGAAGGATCGGACGAGGAAAGCATCTTGC
CCGGAGATGGACAGGAAAGTTTGCCCTTCGGTCGACGCTATGGCAAGGGC
TTGCCAGCGCCTTGCCGCGAGGTTTCAGGTTATGGCGGGGATGTCGAATC
ACCCGGTGGTCGTGTTCAAGACCGAGGGAAAACCTGGCCTAAGCGAGATC
TCCGGCGTTGATATCCTCAGCATGGGCACTCACCGGAGGTTTGCCCTTCG
GTCGACGCTATGGCAAGGGCTTGCCAGCGCCTTGCCGCGAGGTTTCAGGT
TATGGCGGGGATGTCGAATCACCCGGTGGTCGTGTTCAAGACCGAGGGAA
AACCTGGCCTAAGCGAGATCTCCGGCGTTGATATCCTCAGCATGGGCACT
CACCGGAGATTGACGGATATGTTTATTCAGGATCCACTGAAAGAAACCCT
TCAGCTGAACGGGATCGACTTCAGCCGGGATTGGACTTCCATCTCTAGTG
AACAAGATTGACGGATATGTTTATTCAGGATCCACTGAAAGAAACCCTTC
AGCTGAACGGGATCGACTTCAGCCGGGATTGGACTTCCATCTCTAGTGAA
CAAGCTGTCAAGCTCCTTCGAGATATCGGTGGTGTGACCGGACTCGACCA
CACGGATGCCAACACAACGGGGAGCACCGGTTACGTGTTTACCGTTGACA
ATTTCCTGTCAAGCTCCTTCGAGATATCGGTGGTGTGACCGGACTCGACC
ACACGGATGCCAACACAACGGGGAGCACCGGTTACGTGTTTACCGTTGAC
AATTTC
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