mRNA_H-paniculata_contig13927.2405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13927.2405.1
Unique NamemRNA_H-paniculata_contig13927.2405.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: D7FQ56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ56_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 1.870e-134
Identity = 190/269 (70.63%), Postives = 219/269 (81.41%), Query Frame = 1
Query:    1 RQKDVFEQRYGYSWDLCIVFPTEAPPGAPSAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITKYRPHEHIYGKYGTSPRLTNMYSCPPYLEHPFSSVHRIKLIRRMIESNKGDGCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQLNLDAMLAPYFAIFVSFWAV 807
            R +DVFE RYGYSWDLC++FPT+ P G P A  I+R+L N G+ETYLY SVQ DEIICKIRAPLERL+RYAADV Y MLLDE K+K AVE GSK+PPIAGRHITHDPTIT YRPHE IYGKYGTS RLT M++C   LEHPFSS+HRIK++RRM+ES + DGC +NV +L R  A+KAFFPFH +  R  +F  WVKR   P DQPLD +K+Y+GEKI +YFALLGHYT WLGPLSV GL MSI+QI + +LDA LAPYFAIFVSFWAV
Sbjct:   28 RPRDVFETRYGYSWDLCMIFPTDPPSGVPHASEIIRRLHNAGMETYLYYSVQMDEIICKIRAPLERLARYAADVEYLMLLDETKLKRAVEQGSKDPPIAGRHITHDPTITMYRPHELIYGKYGTSQRLTPMFACKAGLEHPFSSMHRIKILRRMVESTEADGCGINVSVLMRNDALKAFFPFHQETVRDALFVKWVKRSLHPIDQPLDDIKEYVGEKIGIYFALLGHYTTWLGPLSVVGLAMSIDQICEWDLDAALAPYFAIFVSFWAV 296          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: A0A1V9ZZN0_9STRA (Anoct_dimer domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZN0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.770e-43
Identity = 98/276 (35.51%), Postives = 148/276 (53.62%), Query Frame = 1
Query:    4 QKDVFEQRYGYSWDLCIVFPTE-------APPGAPSAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITKYRPHEHIYGKYGTSPRLTNMYSC--PPYLEHPFSSVHRIKLIRRMIESNKGDG-CNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQLNLDAMLAPYFAIFVSFW 801
            Q + F++R+GY++D   VF                S   I+++L   GLET L+ S   D + CKIRA L+RL + A  +   +  D  ++K+  + G  E  IA   I+ + + TK  P+++I+GKY    RL N+Y    P   + PF  V RIKLI  +I +   DG C+LN+ MLE +  +   F  H+ E R  +   W+K  + P DQP +++KDY GEK+ LYF  LGHYT WL   S+ G  M  + +++  +DA     F IF++ W
Sbjct:   18 QSEKFKERHGYNYDYVFVFKVHDENQKLSQAQTTFSMRLILQRLAGAGLETRLFYSTTRDLVFCKIRASLQRLCKEADRIDLKLEFDPKELKQIAQAGYPERNIAPIIISEESSQTKRSPYQNIFGKYDMDERLQNVYKKYGPKDKQTPFRGVDRIKLILSIIHAPVHDGGCHLNLKMLEMKECIVTSFALHNFEERDTLNDKWIKWSSLPWDQPYNEIKDYYGEKVGLYFVWLGHYTTWLIAPSIIGAIMLADIVVEGTVDARFLALFGIFMALW 293          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: A0A1V9ZYI8_9STRA (Anoct_dimer domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYI8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.470e-41
Identity = 101/279 (36.20%), Postives = 144/279 (51.61%), Query Frame = 1
Query:   10 DVFEQRYGYSWDLCIVFPT-----EAPPGAPSA-------ESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITKYRPHEHIYGKYGTSPRLTNMYSC--PPYLEHPFSSVHRIKLIRRMIESNKGDG-CNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQLNLDAMLAPYFAIFVSFW 801
            D FEQ+ G+++D  +VF       E     PS          I+ +L N GLET L+ +   D +ICKIRA  ERL + A  +   + LD  +++   + G K   IA  HI+ + T T     E+I+GKY    RL  +Y    P   + PF  V RIKLI  +I+++  DG C LN+ MLE    +   F  HD E R R+   W+   + P  QP + +KDY GEKI LYF  LGHYT WL   S+ G  M  +  ++  +DA    +F +F++ W
Sbjct:    2 DPFEQKNGFNYDYALVFKLGDGEDEKDKKEPSEFQKKYNQRFILARLANAGLETKLFHATIKDIVICKIRASYERLCKEADRIDMKLELDPVELQAMAQAGDKAKGIAEIHISAEHTHTHRNAFENIFGKYDMEERLQRVYKKYGPEGKKIPFRGVDRIKLILSIIQAHIHDGGCALNLQMLEVNNCLVTAFALHDFEERDRLNEKWINWSSPPWKQPYNDIKDYYGEKIGLYFVWLGHYTTWLIAPSIVGALMLADIAIEATVDARFLAFFGVFMAMW 280          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: D7FQE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQE2_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 4.350e-41
Identity = 93/261 (35.63%), Postives = 139/261 (53.26%), Query Frame = 1
Query:   31 GYSWDLCIVFP-TEAPPGAPSAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITKYRPHEHIYGKYGTSPRLTNMYSCPPYLEHPFSSVHRIKLIRRMIESNKG-DGCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQLNLDAMLAPYFAIFVSFWAV 807
            GY +D  +VF  +        A   ++K+   G +  +YLS   +E+ C++RA +ERL +YA  V   MLLD  ++ EA   G  E  IA   I +DP I+   P+E+IY +Y   P L ++Y     + HPF +V R+ +   ++++     G  L V  L+ QG + A FP H  + + R+   W+     P + P DQ+KDY GEKI LYF  LGH T WL PL VAGL  ++   +  N + ++   FA  V FWA+
Sbjct:  214 GYGFDYVMVFKLSRVGVMTDYATETIKKIMAAGFKVRVYLSCSKEEVFCEMRASVERLMQYADQVNRKMLLDRFQLSEAAAAGDPEAKIAPIKINNDPNISFRSPYEYIYARYDRRPDLQHLYYKSDGMWHPFRAVVRLSISIDILKAPMCLGGAGLPVDKLKLQGKILALFPKHFKQNKLRLRNNWLVAKQWPWESPYDQIKDYYGEKIGLYFHFLGHLTTWLIPLGVAGLITAMTVYISGNEEHVITLIFAPIVVFWAI 474          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: A0A6H5KW18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW18_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.800e-39
Identity = 93/261 (35.63%), Postives = 139/261 (53.26%), Query Frame = 1
Query:   31 GYSWDLCIVFP-TEAPPGAPSAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITKYRPHEHIYGKYGTSPRLTNMYSCPPYLEHPFSSVHRIKLIRRMIESNKG-DGCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQLNLDAMLAPYFAIFVSFWAV 807
            GY +D  +VF  +        A   +RK+   G +  +YLS   +E+ C++RA +ERL +YA  V   MLLD  ++ EA   G  E  IA   I +DP I+   P+E+IY +Y   P L ++Y     + HPF +V R+ +   ++++     G  L V  L+ QG + A FP H  + + R+   W+     P + P +Q+KDY GEKI LYF  LGH T WL PL VAGL  ++   +  N + ++   FA  V FWA+
Sbjct:  215 GYGFDYVMVFKLSRVGVMTDYATETIRKIMAAGFKVRVYLSCSKEEVFCEMRASVERLMQYADQVNRKMLLDRFQLSEAAAAGDPEAKIAPITINNDPNISFRSPYEYIYARYDRRPDLQHLYYKSDGMWHPFRAVVRLSISIDILKAPMCLGGAGLPVDKLKLQGKILALFPKHFKQNKLRLRNNWLVAKQWPWETPYEQIKDYYGEKIGLYFHFLGHLTTWLIPLGVAGLITAMTVYISGNEEHVITLIFAPIVVFWAI 475          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: A0A482SUW2_9ARCH (Anoct_dimer domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUW2_9ARCH)

HSP 1 Score: 151 bits (382), Expect = 2.900e-38
Identity = 89/279 (31.90%), Postives = 147/279 (52.69%), Query Frame = 1
Query:    7 KDVFEQRYGYSWDLCIVFPTEAPPGA-------PSAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGR----HITHDPTITKYRPHEHIYGKYGTSPRLTNMYSCPPYLEHPFSSVHRIKLIRRMIESNKGDG-CNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQ-LNLDAMLAPYFAIFVSFWA 804
            KD F    GYSWD  IVF                + + ++++L + GL+T ++ SVQ+DE+  KIR P  RL + A  + Y + ++ +++   +  G+ + P+  +     +      T   P++++Y ++  +    +++   P  E  F  V R+KLI  +I + + +G C+L+V  L+R   + AFFP HD    R +   W++    P  Q ++ VKDY GEKIAL+F  LGHYT WL P  + G+F  IN +    N  A + P+FA FV+ W+
Sbjct:   82 KDPFRNTNGYSWDYVIVFRVHNADAKLKPVQQEKNIKFVIQRLSDAGLQTKMFYSVQNDEVYLKIRCPYSRLIQEADRINYRLCMEPSQLGNQLRIGNMKGPVEKQWKPVEVPSSSLETNLNPYDYMYCEFRPNLHEQSLFKKWPN-ESVFRGVDRLKLIATIIAAKQTEGGCDLDVYRLKRDSCILAFFPLHDAVELRELEEKWLRMCQVPWKQNVEAVKDYFGEKIALFFLFLGHYTSWLFPAGIIGVFAWINVVSDDNNPSAPIMPFFAAFVAIWS 359          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: D8LEZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ6_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.370e-37
Identity = 89/246 (36.18%), Postives = 134/246 (54.47%), Query Frame = 1
Query:   88 SAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITKYRPHEHIYGKYGTS-PRLTNMYSCPPYLEH-----PFSSVHRIKLIRRMIESNKGD-GCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQLN-LDAMLAPYFAIFVSFW 801
            S + I+ +L   G+ET ++ SVQ DE+ CKIR PLERL R A  VGY +LLD   ++   + G +    A   I  +   + Y  +E+IY  Y    P L ++Y     LE      PF    R+KL+  ++ +   D GCNL+++ L +   + AFFP HD    R +   W++ +  P  +P+D VK+Y GEKI LYF  LGHYT WL P S+ G+   ++  +  N  +A+ +  F+IF+  W
Sbjct:   20 SMKEILTRLNAGGIETRMFYSVQRDEVYCKIRCPLERLQREADRVGYKILLDANNLRSTCQHG-RPGKWASIVIQDEYNESPYEAYEYIYAPYTVDRPELESLYKKHGGLEREVMMIPFRGTDRLKLLYSILVAKTADSGCNLDILRLVKSKCLLAFFPLHDKVELRALQRKWLQYFRPPWKEPIDDVKNYFGEKIGLYFLWLGHYTTWLIPASIVGVMAWVHVALSGNDPNALGSALFSIFIGLW 264          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: A0A7S4E8J5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8J5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.380e-35
Identity = 87/276 (31.52%), Postives = 152/276 (55.07%), Query Frame = 1
Query:    7 KDVFEQRYGYSWDLCIVFPTEAPPGAPSAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITK-YRPHEHIYGKYGTSPRLTNMYSCPPYLEHPFS-SVHRIKLIRRMIESNKG-DGCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTV------WLGPLSVAGLFMSINQIMQLNLDAMLAPYFAIFVSFWAV 807
            +D F  +YGY WD C+ F           +S++ +L + G+ET L  S         +RAP+ RL+R A  + + + ++E KVKEA+E G   P I GR + HDP +T   RP+E I+GKY T+ ++  +Y  P    H F+  + R+KL+  +IE      GC +N   L++   ++A +P HD E+R +V   + +R+   GD  ++ ++DY+G+++ALYFA + H+T       ++G  +   +++  + I +    + + P+F+ F   WA+
Sbjct:   63 EDEFRAKYGYGWDACVCFTVVDNALTEQQQSVITRLESGGIETKLVESSDGKRRWALLRAPVHRLARAADALDWVVPMNEEKVKEAIERGG--PGIKGRKLRHDPKLTNNVRPYECIHGKYETNSQMQVLYEVPRGYPHLFAWPLLRLKLLGTIIEQRPSRGGCGVNFHRLQKNNIIEAAYPLHDVEKREQVMEEF-QRWGLRGD--VNNIRDYVGDRLALYFAFVHHFTAGCALSAFVGVATTFIMYLEASVIDRPRAKSRMLPFFSAFQCIWAI 333          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: A0A835ZD27_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD27_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.340e-34
Identity = 87/248 (35.08%), Postives = 130/248 (52.42%), Query Frame = 1
Query:  100 IVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAGRHITHDPTITKYRPHEHIYGKY-GTSPRLTNMY----------SCPPYLEHPFSSVHRIKLIRR-MIESNKGDGCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQLNLDAML--APYFAIFVSFW 801
            I+ +L   G+ET +Y + Q DEI CK+R P+ERL + A  +GY +LLD + ++   + G +    +G  I  +    +Y P+EH++  Y    P + ++Y          S P  +   F  V R+KL+   M+  +   GCNL++V L +  A+  FFP HD    R +   W +   +P  QP+  VKDY GEKI LYF  LGHYT WL P S+ G+   IN     N D  +     F++FV+ W
Sbjct:   25 ILNRLAAGGMETRMYYNAQRDEICCKVRCPVERLQKEAGRIGYKLLLDSSVLRSTCQHG-RPGRWSGLVIQDEHNQCRYEPYEHLHAPYLSDRPDMESLYKRYGDAAGAGSAPKIV---FRGVDRLKLMYTIMVAKSSEGGCNLDIVKLLKYKAILGFFPLHDKVELRLLQRAWFRYVQAPWAQPIQDVKDYYGEKIGLYFLWLGHYTTWLLPASICGILAWINVAAAGN-DPNVPGTAAFSVFVALW 267          
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Match: A0A6V2ZSX1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2ZSX1_HETAK)

HSP 1 Score: 140 bits (354), Expect = 3.460e-34
Identity = 96/288 (33.33%), Postives = 145/288 (50.35%), Query Frame = 1
Query:   10 DVFEQRYGYSWDLCIVFPT-----EAPPGAPSAESIVRKLGNTGLETYLYLSVQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGS-KEPPIAGRHITHDPTITKYRPHEHIYGKY-----GTSPRLTNMYSCPPYLEHP-FSSVHRIKLIRRMIESNKGD---GCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYTSPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGL--FMSI-------NQIMQLNLDAMLAPYFAIFVSFW 801
            D F++  GYSWD  +VF       + P G  + + IV  L + GLET L+ SVQ D++ CKIR PLERL  YA  V Y +L+D  ++K+  E G+ K  PI       D +      +E IY +Y     G +  ++ +Y    Y     F  + R+KLI  ++ +       G NLN+  ++ +  ++  FP HD +    +   W+K    P  QP D +KDY GEKI LY+  LGHYT WL P  + GL  + +I       N +  +   A++A +   F+ +W
Sbjct:   88 DEFQETNGYSWDWVMVFKVFDEDDKFPEGQKTMKEIVTALHSAGLETQLFFSVQRDKVYCKIRVPLERLKGYADKVDYKLLMDPDELKQYCERGTAKWNPIK----IVDESDELLPAYECIYMEYRKTQEGDTKNISMLYK--KYSNRTNFKGIDRLKLIYGIMTAKNDPEFMGANLNITEMKDKKGIEDLFPLHDYDELVGLEKRWLKLMQWPWQQPTDDIKDYFGEKIGLYYVWLGHYTTWLMPPMLTGLGFWFAIATQGGDPNTVYLIPFSALIALWATFFLEYW 369          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13927.2405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ56_ECTSI1.870e-13470.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9ZZN0_9STRA1.770e-4335.51Anoct_dimer domain-containing protein n=1 Tax=Thra... [more]
A0A1V9ZYI8_9STRA1.470e-4136.20Anoct_dimer domain-containing protein n=1 Tax=Thra... [more]
D7FQE2_ECTSI4.350e-4135.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW18_9PHAE1.800e-3935.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SUW2_9ARCH2.900e-3831.90Anoct_dimer domain-containing protein n=1 Tax=arch... [more]
D8LEZ6_ECTSI2.370e-3736.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4E8J5_9STRA1.380e-3531.52Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835ZD27_9STRA1.340e-3435.08Calcium-activated chloride channel-domain-containi... [more]
A0A6V2ZSX1_HETAK3.460e-3433.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13927contigH-paniculata_contig13927:1129..6641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.2
Seed ortholog evalue7.6e-109
Seed eggNOG ortholog2880.D7FQ56
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2513@1,KOG2513@2759
Ec32 ortholog descriptionAnoctamin
Ec32 orthologEc-01_007420.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size813
Cds size813
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13927.2405.1prot_H-paniculata_contig13927.2405.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13927 1129..6641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.874689-CDS-H-paniculata_contig13927:1128..13081622929105.874689-CDS-H-paniculata_contig13927:1128..1308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 1129..1308 -
1691480733.7286406-CDS-H-paniculata_contig13927:1128..13081691480733.7286406-CDS-H-paniculata_contig13927:1128..1308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 1129..1308 -
1622929105.8878536-CDS-H-paniculata_contig13927:2439..25871622929105.8878536-CDS-H-paniculata_contig13927:2439..2587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 2440..2587 -
1691480733.7382846-CDS-H-paniculata_contig13927:2439..25871691480733.7382846-CDS-H-paniculata_contig13927:2439..2587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 2440..2587 -
1622929105.9001877-CDS-H-paniculata_contig13927:3149..32961622929105.9001877-CDS-H-paniculata_contig13927:3149..3296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 3150..3296 -
1691480733.7488048-CDS-H-paniculata_contig13927:3149..32961691480733.7488048-CDS-H-paniculata_contig13927:3149..3296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 3150..3296 -
1622929105.910508-CDS-H-paniculata_contig13927:4600..47561622929105.910508-CDS-H-paniculata_contig13927:4600..4756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 4601..4756 -
1691480733.7612557-CDS-H-paniculata_contig13927:4600..47561691480733.7612557-CDS-H-paniculata_contig13927:4600..4756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 4601..4756 -
1622929105.927738-CDS-H-paniculata_contig13927:6045..61581622929105.927738-CDS-H-paniculata_contig13927:6045..6158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 6046..6158 -
1691480733.7710323-CDS-H-paniculata_contig13927:6045..61581691480733.7710323-CDS-H-paniculata_contig13927:6045..6158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 6046..6158 -
1622929105.9484346-CDS-H-paniculata_contig13927:6572..66411622929105.9484346-CDS-H-paniculata_contig13927:6572..6641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 6573..6641 -
1691480733.7800992-CDS-H-paniculata_contig13927:6572..66411691480733.7800992-CDS-H-paniculata_contig13927:6572..6641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13927 6573..6641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13927.2405.1

>prot_H-paniculata_contig13927.2405.1 ID=prot_H-paniculata_contig13927.2405.1|Name=mRNA_H-paniculata_contig13927.2405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
RQKDVFEQRYGYSWDLCIVFPTEAPPGAPSAESIVRKLGNTGLETYLYLS
VQDDEIICKIRAPLERLSRYAADVGYTMLLDEAKVKEAVEGGSKEPPIAG
RHITHDPTITKYRPHEHIYGKYGTSPRLTNMYSCPPYLEHPFSSVHRIKL
IRRMIESNKGDGCNLNVVMLERQGAVKAFFPFHDDERRRRVFALWVKRYT
SPGDQPLDQVKDYLGEKIALYFALLGHYTVWLGPLSVAGLFMSINQIMQL
NLDAMLAPYFAIFVSFWAVR*
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mRNA from alignment at H-paniculata_contig13927:1129..6641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13927.2405.1 ID=mRNA_H-paniculata_contig13927.2405.1|Name=mRNA_H-paniculata_contig13927.2405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5513bp|location=Sequence derived from alignment at H-paniculata_contig13927:1129..6641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCAAAAGGACGTTTTCGAACAACGTTACGGCTACTCGTGGGACCTATG TATCGTGTTTCCTACAGAGGTAAGACAGACGAAGAGCACACTTTTTGTAT TAATACATGCTTTCCCTTCGGCTTTTCGATGTTTCTGCTCTGCGTGAGAA CGCACAGGGAAGATAATCAAAGTTCTTGGAAAAAACTGGGAGAAAACTCG AGGCAAGACTTACATAACATGCATAGCAAAATAAGGGATAGTTCATACTG CAAGTTTTCTGTACAGTAGTGGACATAACCTCCTTTTTAACGTATGCATA GCTGTGTTTTTTTATTGTTTTTTCTTGCGTTTTTGTCACGACGCTAACAA ACTCTCGTGTTGTGTTTTTATGTTCGTTTGCTTTTTTCAGTAAGTCAATG ATAATACCTGTTTATATATTCCCTTTTTTTTTTTTTTTCTGGTACAACCG CAAAACACCTCTTGAACGGCTTGTATCGTTCAGGCGCCGCCAGGCGCTCC CTCTGCCGAATCCATCGTGAGGAAGCTTGGCAACACGGGTTTGGAGACAT ACCTCTACCTCTCCGTCCAGGATGACGAGATCATCTGCAAGATACGGTAA ACGCCAAAGACACACGGCTATGATAGAGAACCACCCACAGCCCTCAACAC TCACTCAGGATTCGCCGATAGGGTTCACAACTTGGATGAACACGATAGTT GAGGTACACTAACTCAGCATAATGAAAAGAGCACCCAGAAAGTTATCAGA AAGTTCTGGTGTGGGTCGTTCTGAGTTATGCCCCCAAGACGGTTTCCGCT CCCGCGGATTTGAGCTCTGCCAACGTACCAAAGATTTAGGGGTTACCGTT AGTTTTAGCGTTGGTCCCATTCGCATCGGGGCACCACAAAGTGTATAAAC CATCGAACACAAGATCTGCCAACCGCCTTGTTTGACCAAGTGGTGAATAG CTCTCGGCCTCACCACCAACACCGACCCAACCCAACCCAATACTCAGAAT TCACTGTAGGGATATTTTGATGGATAGAATCCATTGGCCAGCTCGTACCT TGTCCTTCGTGCACAGGTAACTGCGCGCTGCGAAGATTTTTTTTCCCCTT ATAATTGGTCATTATTCACCTGTTCAGACGAGAGAGTAAATTACATGCAG CTTTGAAGAATAGGCTTCACATCCTGAGTATGACGAATAGGTGTCTCTTT TGATTCTGTGTAATACGTTAACACATCGTGGTGGTCGTTATTCCGATTGT TTTCGCAATTTTGTACACGAGTATTCTGTATGCATTGAATCCTCTCAGGC AGTGTGTCTACTTACGAGCGCAGCGAGCCGTCGCGGTGGGAAAACGGGGT TTGGGAAATTAGCGAAGTGGGTGTGAGAGCGAAGCACGGGGTGTACTAAT GCTCTATAGGTGTCCCTATAGGAAACAGCAGACCAATGGTAATGTTTTTT CTCTCAAGGTCACTGTTGCTCGTCATCGCTGCTTCTTCATTTTGATACAT TGTACAGATGTGCGAGCTGATACAACGAACGTACTTTCCTCTGCGTCCCC TCCCTCCCGCCCCGTTTTTGGTCATGATAACATTTTGCTGAGTAGTGCAT ACGACCAAAGCTCAAGTTCAGCCGCATAGCCCTTAACATTGGGTACAATA GAGTTATTATAAGAGCCTCAGAGCTATAGTTCATTTAACTGTGGCTGGGC GGGCACCTCTTAATTGATTTAGTTTTGCTGATGAATGTACACAAATGCAG AGTAAGGTTAGCTGCATAACTTCAACATGGATACAATGGAGTATGATACG AGGTTCAGAGTTATAGTTCAGCTGAATTCGGCAATGTACCCCCCCCCCCC TGAATAACAACCCCGCGTCCCCTCTTGATATCCAGGGCACCATTGGAGCG GTTGAGTCGATACGCTGCCGATGTGGGGTACACTATGCTTTTGGATGAAG CGAAAGTGAAGGAGGCAGTGGAGGGGGGATCTAAGGAGCCACCCATCGCC GGCCGGCATATAACGCATGACCCCACTATCACGAAGTATAGGTAATACAT GGGGTCATAACAAATACACCGTGTGGGGGAATAATAGCAAGTGCTGTGTT GTCACTTCAAAATATTGGTTCTTCGATGCATTAAATCCGCTGGTCATACT TCCGTTTAGTTTTTACGGTTATCGTCATTTTTTATATGGTAGTTCATCTC CTTTTACTTTTGACTCCCTGTTGAACTCATGGTAGTGTTTCCCAACCGTA TTTTCATGGTCATTGTCTAAGATGCCGTCCCTTTGGTGGAGCTTGTCCGT GGTAAATTGCGAATGTGGTAATTAATGTTGCTATATTTTTGGAGGTGATA AAGTACGTACACCTGCGTGAAGGGCACACTACTGGTTGTCTACCGTGTGT TACTGCTATCATGGCTCATGCATTTAGATTTTTATCGGTCTCGGACGTCG TATTTACGCCAAAATTAACGCAGAAAAATAGTAACCTGCACATGGTATTA GCAGCGTCAGCAGGGAGTACGACGTGAGCGACAGGGGAGCAAGAGTTTTT TCGTGTGCAGCATTCCTGGCCAAGCTGACACCAATATTTTACAAAAGCAC CAGTCTGCCTGCACGCTACCTAGCAATTTTATCCTCATGGTTCTGTCTTC CAAATGTCGAGTGTTTCACACGAGCAAGATTGCTTTTTAATCTCCCATCT TAGTCTTGTGCTAGTTATACTGTTTCGTAGTCTTGATCTTCCGCACGTAT CTTGATCTGTTGAATATTTTATCAGGAAAAGTTATAAGTAGGTAGAGTTG CCAAGGTTCATTGAATTTGAATGATTTTATACTTACGCTCCCCATTTCGA TTTTTTTTTTGCTAATAAGTGTGGACAAGTGCAGCTTATAGTGAGCTGTA TATAACTTTAACATGGCTACAGCAGAGTTATGATATATTACGGAGGAAAT AATAATCAGGAGCAAATTATAAAATTGACATTTTGAGGTGTAACTCATGC AATACGATATGCACCGATCGGTTGCTGCATGCCTGTGCAAGTGTTTTTGG AGAGTATTTTTGTCTTTAGCTAGAAGCGAAAATCTGTACACCAACGGGGG AAAAAACAAAATCAGTTTCCGAAAAACCAAAAAAAATACTCCTGATTGTT ATGTTCCTCCATAATAGTGTTGAGAGTTATAGTTCAAGTAACTGTGGCAG GGTTAACTTATGTTTGTTCGTTTGCTGGTAAGTCTACATGAACTGCAGAT ACGAAGTCAGCCGCGTAAACTCAACATGGATATAATGGAGCCCCCCCTTT CCTCTCCCCCAAATAACACATCCACTTACCCACGTCAAAACACAGGCCCC ACGAGCACATCTACGGGAAGTACGGGACTTCACCGCGGCTGACCAACATG TACTCCTGCCCTCCCTACCTGGAACACCCGTTCTCGAGCGTGCACCGGAT CAAGCTCATCCGACGCATGATTGAGAGCAACAAGGGAGATGGGTGAGCGT AATGGATCATAGGCAAGCCAGGTTTGCCCCTTGTGACCTCTAAAATGCTT ACCTGGCACGGGTATTTAACTTGCAGTGCCTCTTTGACTAGTTTAGTCTG TTTATGGCTTTGTCACAGTCTGCACCCACACGCGGAGGTTTATGTAGCCT ATTATCAATCTGGGCTGGGTTACATTAGATGATCGTATCAGCAAAATTAC GACGACGTGACGAAAATCAGCGCCGAAAGGTTATTTCCGATTTTGGTTTG ATCTGTCAACCTCCACCTGTCTCTCGCCCGAATGTTACCCCCATGTCGTC GTCATCGCCCCCCGCCCCCTTCCTTTTTTTTTCTTTTTTTTTTTCAGTTT TGTGCTTTCATTGTAGTACATACCATGAAACAAACGTTTCCTTCAAAATT GAAGTAACTGACTACCCACAAGAGTTGATTGATCGGGTTAGGGAATGCAT ACAACTGAACCCTCTCCCTACCCCTTTACCGCATTGCGTCGTGTCGCGTT GCATCGTTATCTGTCCCCCGGACCTTTTGTCCGTTGTGTGTTGTATATCA ATAGGTGCAATTTGAATGTGGTGATGTTGGAAAGGCAGGGAGCGGTGAAG GCTTTCTTCCCATTTCATGACGACGAGCGACGAAGAAGAGTCTTTGCTCT CTGGGTCAAGCGGTACACGAGCCCGGGCGATCAGCCGCTTGACCAAGTCA AGGTTCGTTTTCCTTTTTTGCGTTTTTTTTGGGGGGAGGTGAACGGGCGG TTGTGTGTGTGCTGTTCGTTCTTCTGTCGTGAAAAAAAAATGTGAATGAG TAAAACTGTCGCGGCGATTCGAGTAATTATGTGCAATTCACGTGAATGTG ACTAGAAATAGCTCATTTGTGTCCGAAACAGCGGACTGTATTTCATCCTC TCTCCGAAAATGTACGTATACATACAAATATATATAATATATATATATAT ATATATATTACGTGGAATGGGAATCAGTGTTCGCCTGAGCGGTTTTCTTT TTTCTCAATACCCTGGGCACCACTGCTCGCCTCAGCAGCGACAGCCATAG ATATATCTTGCTACGCTTGTGCGGTGGCTCTACACCTGCACAGGCTAATA ACGCCCCCCTTACAACCATCTACCGTTAGCACTGAAGATGTTACGTGGCG GGAGCGGTGATATCTTGCGATATATGGAGGAACAGCCACGGACCTACCCC CGAACGGGTAGGGTAGCTCATGAACTGAGCATGACTGAAGTCTAGTCAGA GGTAATTTAGTGGGTGCAACCCCCACACTGCCCACCTGGTTTAGCCGAAC CGGGGTGGCGCCTACCCCGCAGAGGAGAAAATAACTCTGTTCTGTAAAAG GAAATGTAGAAATACTTTGGTAAAACACTTAGGTATGGAAGCATCGGTAA AGGTTTTTGCCTTAGCCTTCCGGGGGTTAAAAAAAAAAAATGGAGGAACA CGATTGGTGATAAGGTCGACTTCTTCATTCCCCTGTTGCACGGGGCAGTT TGATTTGTCGTGGTTCAAGGCTTACAGCTAACGTTATCACAATCTCAGTA AAGCGCTGCGACTACTGTATTACCGAGTGAAACCCGAGATAATCAGTAGT TTGGCGAGCCCAAATGTGTCTCAAAGAGGTAGATGTGATGATGAACCGAT TTCGAGACACATTTGGAAAAAATTGATAAGCAATCGGAGATCGCCCGGAT AGGAACAAAACGCCCTCCTCTTGAGGATGCATGATCAATGGTCTCATAAC CCCGGCATCCAAAACACGAATACGACCCTTCCTTCCGCACTGTGTGCGCG CCTCATGCCTTGCTTGCTGCTTATTGGTGCCAGGACTATCTGGGCGAGAA GATTGCGCTTTACTTCGCCCTTCTGGGACACTACACCGTGTGGCTGGGCC CCCTGTCCGTCGCCGGTCTGTTCATGTCGATCAACCAGATCATGCAGCTC AACCTCGACGCTATGCTCGCTCCCTACTTCGCCATCTTCGTATCGTTTTG GGCGGTACGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13927:1129..6641-

>mRNA_H-paniculata_contig13927.2405.1 ID=mRNA_H-paniculata_contig13927.2405.1|Name=mRNA_H-paniculata_contig13927.2405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig13927:1129..6641- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCAAAAGGACGTTTTCGAACAACGTTACGGCTACTCGTGGGACCTATG
TATCGTGTTTCCTACAGAGCGGCAAAAGGACGTTTTCGAACAACGTTACG
GCTACTCGTGGGACCTATGTATCGTGTTTCCTACAGAGGCGCCGCCAGGC
GCTCCCTCTGCCGAATCCATCGTGAGGAAGCTTGGCAACACGGGTTTGGA
GACATACCTCTACCTCTCCGTCCAGGATGACGAGATCATCTGCAAGATAC
GGCGCCGCCAGGCGCTCCCTCTGCCGAATCCATCGTGAGGAAGCTTGGCA
ACACGGGTTTGGAGACATACCTCTACCTCTCCGTCCAGGATGACGAGATC
ATCTGCAAGATACGGGCACCATTGGAGCGGTTGAGTCGATACGCTGCCGA
TGTGGGGTACACTATGCTTTTGGATGAAGCGAAAGTGAAGGAGGCAGTGG
AGGGGGGATCTAAGGAGCCACCCATCGCCGGCCGGCATATAACGCATGAC
CCCACTATCACGAAGTATAGGGCACCATTGGAGCGGTTGAGTCGATACGC
TGCCGATGTGGGGTACACTATGCTTTTGGATGAAGCGAAAGTGAAGGAGG
CAGTGGAGGGGGGATCTAAGGAGCCACCCATCGCCGGCCGGCATATAACG
CATGACCCCACTATCACGAAGTATAGGCCCCACGAGCACATCTACGGGAA
GTACGGGACTTCACCGCGGCTGACCAACATGTACTCCTGCCCTCCCTACC
TGGAACACCCGTTCTCGAGCGTGCACCGGATCAAGCTCATCCGACGCATG
ATTGAGAGCAACAAGGGAGATGGGCCCCACGAGCACATCTACGGGAAGTA
CGGGACTTCACCGCGGCTGACCAACATGTACTCCTGCCCTCCCTACCTGG
AACACCCGTTCTCGAGCGTGCACCGGATCAAGCTCATCCGACGCATGATT
GAGAGCAACAAGGGAGATGGGTGCAATTTGAATGTGGTGATGTTGGAAAG
GCAGGGAGCGGTGAAGGCTTTCTTCCCATTTCATGACGACGAGCGACGAA
GAAGAGTCTTTGCTCTCTGGGTCAAGCGGTACACGAGCCCGGGCGATCAG
CCGCTTGACCAAGTCAAGGTGCAATTTGAATGTGGTGATGTTGGAAAGGC
AGGGAGCGGTGAAGGCTTTCTTCCCATTTCATGACGACGAGCGACGAAGA
AGAGTCTTTGCTCTCTGGGTCAAGCGGTACACGAGCCCGGGCGATCAGCC
GCTTGACCAAGTCAAGGACTATCTGGGCGAGAAGATTGCGCTTTACTTCG
CCCTTCTGGGACACTACACCGTGTGGCTGGGCCCCCTGTCCGTCGCCGGT
CTGTTCATGTCGATCAACCAGATCATGCAGCTCAACCTCGACGCTATGCT
CGCTCCCTACTTCGCCATCTTCGTATCGTTTTGGGCGGTACGTTAGGACT
ATCTGGGCGAGAAGATTGCGCTTTACTTCGCCCTTCTGGGACACTACACC
GTGTGGCTGGGCCCCCTGTCCGTCGCCGGTCTGTTCATGTCGATCAACCA
GATCATGCAGCTCAACCTCGACGCTATGCTCGCTCCCTACTTCGCCATCT
TCGTATCGTTTTGGGCGGTACGTTAG
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