mRNA_H-paniculata_contig13922.2403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13922.2403.1
Unique NamemRNA_H-paniculata_contig13922.2403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: D7G3E9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E9_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.230e-57
Identity = 101/141 (71.63%), Postives = 112/141 (79.43%), Query Frame = 2
Query:  749 DGGKHATTELVEEAGVAAGQSFGSMLRFGTIVEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQ 1171
            DGG+ A      E G A     GS L F  IV+GK M P++FEGKAVLVVNTASLCGLTPQLKEL++VH RF  EGLVVLGVPSNDFGAQEPW+EEKI +FY KDFGVTFPLTSKT V+GP+AHPLY+ V AEFG DVGPQ
Sbjct:  101 DGGEQAGRGAAAETGTAI--PLGSKLAFKAIVDGKPMPPDDFEGKAVLVVNTASLCGLTPQLKELELVHKRFRGEGLVVLGVPSNDFGAQEPWDEEKIKDFYAKDFGVTFPLTSKTVVVGPEAHPLYSAVIAEFGQDVGPQ 239          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A0A835YHH5_9STRA (Glutathione peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH5_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.910e-55
Identity = 92/160 (57.50%), Postives = 113/160 (70.62%), Query Frame = 2
Query:  809 SFGSMLRFGTIVEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECLRE 1288
            ++ + L F       ++ PE F GKAVLVVNTAS CGLTPQLKE+Q+VH RF  +GL+VLGVP NDFG QEPWEE+KI++FYK  +GVTFPL +K  V GP+AHPLYA +  + G D  PQWNFHK L    G L  VFG  + P + +V+EAIEE L E
Sbjct:    2 AYSAKLDFEGCAGTDKLSPESFAGKAVLVVNTASKCGLTPQLKEMQLVHKRFKAQGLIVLGVPCNDFGGQEPWEEQKIMDFYKSKYGVTFPLAAKVHVRGPNAHPLYAALRKDLGEDALPQWNFHKFLFSGHGDLLGVFGHIIPPTDVEVSEAIEEALAE 161          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: W4GP68_9STRA (Glutathione peroxidase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GP68_9STRA)

HSP 1 Score: 166 bits (421), Expect = 5.010e-45
Identity = 78/141 (55.32%), Postives = 98/141 (69.50%), Query Frame = 2
Query:  863 PEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECLR 1285
            P  F+ K +LVVNTAS CGLTPQLK LQ +HTR++ +GL VL VPSNDFGAQEP ++  +  FYK ++ VTFP+T+KT VLG DAHP Y  +   +  +V P WNF K +V   G L AVF  N+ PLEP+V E IE  L+
Sbjct:   44 PSLFQQKIILVVNTASKCGLTPQLKSLQELHTRYAAKGLTVLAVPSNDFGAQEPEDDATLEAFYKSEYNVTFPITTKTKVLGDDAHPFYQAIVEHYTNEVSPAWNFEKFIVDESGDLRAVFPRNVDPLEPEVIETIENLLK 184          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A0A1F3AGC1_9PROT (Glutathione peroxidase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3AGC1_9PROT)

HSP 1 Score: 163 bits (413), Expect = 2.050e-44
Identity = 78/150 (52.00%), Postives = 103/150 (68.67%), Query Frame = 2
Query:  836 TIVEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECLR 1285
            T+++GK +  E+  GKAVLVVN AS CG TPQ  +LQ +H  +  +GLVVLGVPSNDFGAQEP  E +I +F +  +GVTF LT+K  V+GPDAH LY  + A+ G    P+WNFHK L+G DG+L   + S + P   ++TEA+E  LR
Sbjct:    9 TMIDGKPLALEDLAGKAVLVVNVASYCGFTPQYTDLQKLHETYGPKGLVVLGVPSNDFGAQEPRGEAEIAKFCESLYGVTFSLTAKQKVIGPDAHALYGWIAAQAGEGAAPKWNFHKYLIGKDGSLLGAWPSRVRPGSGEITEAVEAALR 158          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A0A2E6QKS0_9PROT (Glutathione peroxidase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QKS0_9PROT)

HSP 1 Score: 161 bits (408), Expect = 1.120e-43
Identity = 77/147 (52.38%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  842 VEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECL 1282
            ++G E+    F+GKAVL+VNTAS CG TPQ + LQ +   +   GLVVLGVPSNDFG QEP   E+I EF +  F V FPLT K  V+G +AHPLY  ++ E G D+ P+WNFHK L+ PDG+LA  + S ++P   DVT A+E  L
Sbjct:   11 IDGAELPMASFDGKAVLLVNTASFCGFTPQYEGLQSLWETYRDRGLVVLGVPSNDFGKQEPGSSEEIKEFCETKFDVNFPLTEKVQVIGAEAHPLYRWISDELGEDMAPRWNFHKYLIAPDGSLAGTWPSRVTPTSEDVTTAVEAVL 157          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A0A8D5WU01_9PROT (Hydroperoxy fatty acid reductase gpx1 n=1 Tax=Alphaproteobacteria bacterium SO-S41 TaxID=2829083 RepID=A0A8D5WU01_9PROT)

HSP 1 Score: 161 bits (408), Expect = 1.160e-43
Identity = 82/149 (55.03%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  836 TIVEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECL 1282
            T +EGK +   EF GKAVL+VNTAS CGLTPQ K LQ +       GLVVLGVPSNDFGAQEP  E ++ +F +  FGV+FPLTSK  V+G +AHPLY  +  + G    P+WNFHK L+  DGTLA  FGS  +P  P++T AI++ L
Sbjct:   10 TTIEGKPLKLSEFAGKAVLLVNTASACGLTPQYKGLQELWDAKKDGGLVVLGVPSNDFGAQEPGTEAEVKDFCEARFGVSFPLTSKNPVIGAEAHPLYKWIGEQTGEAGLPKWNFHKYLIAKDGTLAGTFGSMTAPEAPELTAAIDKAL 158          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A0A317EJ12_9PROT (Glutathione peroxidase n=2 Tax=Zavarzinia aquatilis TaxID=2211142 RepID=A0A317EJ12_9PROT)

HSP 1 Score: 162 bits (409), Expect = 1.690e-43
Identity = 78/147 (53.06%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  842 VEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECL 1282
            + G ++  ++F GK VL+VNTAS CGLTPQ   L+ ++  +  +GLVVLGVP+NDFGAQEP  E +I  F +  F V FP+T+K  V+G  AHP Y    AE G    P+WNFHK L+GPDG+LA  FGS L PL PD+T AIE  L
Sbjct:   36 IAGGDIRLKDFAGKPVLIVNTASACGLTPQYAGLESLYRTYGPKGLVVLGVPANDFGAQEPGTEAEIKTFCETRFAVDFPMTAKQVVIGEGAHPFYRWAAAELGEAGTPKWNFHKYLIGPDGSLAGSFGSRLDPLSPDITSAIEAAL 182          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A0A523PRI4_9PROT (Glutathione peroxidase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PRI4_9PROT)

HSP 1 Score: 160 bits (404), Expect = 4.270e-43
Identity = 76/147 (51.70%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  842 VEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECL 1282
            ++G+ +    F G+A+LVVNTAS CG TPQ  EL+ + +R+   GLVVLGVPSNDFGAQEP  E +I +F + ++ V FPLT K  V+G DAHP Y  V  E G    P+WNFHK L+GPDG+LA ++ S++SPL+ ++T+AI+  L
Sbjct:   11 IDGELLELSRFAGQALLVVNTASACGYTPQYAELETLWSRYRARGLVVLGVPSNDFGAQEPGSEAEIKQFCQTNYTVDFPLTQKQRVIGGDAHPFYQWVVDEIGEVAAPKWNFHKYLIGPDGSLAGLWPSDVSPLDSEITDAIDALL 157          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A0A418WDN3_9PROT (Glutathione peroxidase n=1 Tax=Oleomonas cavernae TaxID=2320859 RepID=A0A418WDN3_9PROT)

HSP 1 Score: 159 bits (403), Expect = 6.750e-43
Identity = 80/147 (54.42%), Postives = 98/147 (66.67%), Query Frame = 2
Query:  842 VEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECL 1282
            ++G E+   +F GK VLVVNTAS CGLTPQ   L+ +  ++  EGLVVLGVP+NDFGAQEP  E +I  F +  F V FP+ +K  V+G  AHP YA   AE G    P+WNFHK L+ PDGTLAA FGS  +P  P+V EAIE  L
Sbjct:   12 IDGGEIRLRDFAGKPVLVVNTASACGLTPQYAGLEALWKKYGGEGLVVLGVPANDFGAQEPGTEAEIKTFCETRFAVDFPMAAKQPVIGGSAHPFYAWAAAELGEAGTPKWNFHKYLIAPDGTLAASFGSRTAPEAPEVVEAIEAAL 158          
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Match: A7HPR0_PARL1 (Glutathione peroxidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HPR0_PARL1)

HSP 1 Score: 159 bits (402), Expect = 8.070e-43
Identity = 73/147 (49.66%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  842 VEGKEMLPEEFEGKAVLVVNTASLCGLTPQLKELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLTSKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNLSPLEPDVTEAIEECL 1282
            ++G+ +    F GK +L+VNTAS CG TPQ +EL+ +  R+   GL ++GVPSNDFGAQEP  EE+I+EF + ++ +TFPLT+K  V+G +AHP Y  V+   G D  P+WNFHK LVGPDG LA ++ S +SPL+  + + IE  L
Sbjct:   11 IKGEALPLSRFSGKPILIVNTASRCGFTPQYRELEGLWERYRARGLTIIGVPSNDFGAQEPGTEEEIVEFCEVNYSITFPLTAKQQVVGAEAHPFYLWVSEVAGEDARPRWNFHKYLVGPDGALAGIYPSKVSPLDKILVDEIERLL 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13922.2403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E9_ECTSI3.230e-5771.63Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835YHH5_9STRA1.910e-5557.50Glutathione peroxidase n=1 Tax=Tribonema minus Tax... [more]
W4GP68_9STRA5.010e-4555.32Glutathione peroxidase n=9 Tax=Aphanomyces astaci ... [more]
A0A1F3AGC1_9PROT2.050e-4452.00Glutathione peroxidase n=2 Tax=Alphaproteobacteria... [more]
A0A2E6QKS0_9PROT1.120e-4352.38Glutathione peroxidase n=1 Tax=Rhodospirillaceae b... [more]
A0A8D5WU01_9PROT1.160e-4355.03Hydroperoxy fatty acid reductase gpx1 n=1 Tax=Alph... [more]
A0A317EJ12_9PROT1.690e-4353.06Glutathione peroxidase n=2 Tax=Zavarzinia aquatili... [more]
A0A523PRI4_9PROT4.270e-4351.70Glutathione peroxidase n=1 Tax=Proteobacteria bact... [more]
A0A418WDN3_9PROT6.750e-4354.42Glutathione peroxidase n=1 Tax=Oleomonas cavernae ... [more]
A7HPR0_PARL18.070e-4349.66Glutathione peroxidase n=1 Tax=Parvibaculum lavame... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13922contigH-paniculata_contig13922:1079..6676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score161.4
Seed ortholog evalue7.1e-37
Seed eggNOG ortholog402881.Plav_0270
Preferred namebtuE
KEGG rclassRC00011,RC00982
KEGG koko:K00432
KEGG ReactionR00274,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04918,map00480,map00590,map04918
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Belongs to the glutathione peroxidase family
EggNOG OGs1RD1R@1224,2TU17@28211,COG0386@1,COG0386@2
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-00_006580.1
EC1.11.1.9
COG Functional cat.O
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size1590
Cds size972
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13922.2403.1prot_H-paniculata_contig13922.2403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13922 1360..6339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.661923-UTR-H-paniculata_contig13922:1078..13591622929105.661923-UTR-H-paniculata_contig13922:1078..1359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13922 1079..1359 -
1691480733.5965161-UTR-H-paniculata_contig13922:1078..13591691480733.5965161-UTR-H-paniculata_contig13922:1078..1359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13922 1079..1359 -
1622929105.7721782-UTR-H-paniculata_contig13922:6339..66761622929105.7721782-UTR-H-paniculata_contig13922:6339..6676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13922 6340..6676 -
1691480733.6880367-UTR-H-paniculata_contig13922:6339..66761691480733.6880367-UTR-H-paniculata_contig13922:6339..6676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13922 6340..6676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.6805952-CDS-H-paniculata_contig13922:1359..14491622929105.6805952-CDS-H-paniculata_contig13922:1359..1449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 1360..1449 -
1691480733.6145048-CDS-H-paniculata_contig13922:1359..14491691480733.6145048-CDS-H-paniculata_contig13922:1359..1449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 1360..1449 -
1622929105.698489-CDS-H-paniculata_contig13922:1820..18691622929105.698489-CDS-H-paniculata_contig13922:1820..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 1821..1869 -
1691480733.6247609-CDS-H-paniculata_contig13922:1820..18691691480733.6247609-CDS-H-paniculata_contig13922:1820..1869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 1821..1869 -
1622929105.7155771-CDS-H-paniculata_contig13922:2033..21101622929105.7155771-CDS-H-paniculata_contig13922:2033..2110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 2034..2110 -
1691480733.6352851-CDS-H-paniculata_contig13922:2033..21101691480733.6352851-CDS-H-paniculata_contig13922:2033..2110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 2034..2110 -
1622929105.7270904-CDS-H-paniculata_contig13922:2714..27861622929105.7270904-CDS-H-paniculata_contig13922:2714..2786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 2715..2786 -
1691480733.6452181-CDS-H-paniculata_contig13922:2714..27861691480733.6452181-CDS-H-paniculata_contig13922:2714..2786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 2715..2786 -
1622929105.7428257-CDS-H-paniculata_contig13922:4106..42091622929105.7428257-CDS-H-paniculata_contig13922:4106..4209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 4107..4209 -
1691480733.6549606-CDS-H-paniculata_contig13922:4106..42091691480733.6549606-CDS-H-paniculata_contig13922:4106..4209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 4107..4209 -
1622929105.7593012-CDS-H-paniculata_contig13922:5758..63391622929105.7593012-CDS-H-paniculata_contig13922:5758..6339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 5759..6339 -
1691480733.6697733-CDS-H-paniculata_contig13922:5758..63391691480733.6697733-CDS-H-paniculata_contig13922:5758..6339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13922 5759..6339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13922.2403.1

>prot_H-paniculata_contig13922.2403.1 ID=prot_H-paniculata_contig13922.2403.1|Name=mRNA_H-paniculata_contig13922.2403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MAFMLRRHGRSAATKTASIARCTRGPTSCVHAAASDHKSFRFVNAFSRNR
SSSSCSNSSLSSVADFPTTLGAVCTDNQRDTAALVTSAWAAAAATTDVAS
ITTRHTTRTKQQSVRGRAWAGAAARWLCSSTSPPTTPDGGKHATTELVEE
AGVAAGQSFGSMLRFGTIVEGKEMLPEEFEGKAVLVVNTASLCGLTPQLK
ELQMVHTRFSTEGLVVLGVPSNDFGAQEPWEEEKILEFYKKDFGVTFPLT
SKTTVLGPDAHPLYAGVTAEFGPDVGPQWNFHKLLVGPDGTLAAVFGSNL
SPLEPDVTEAIEECLREKKKDPA*
back to top

mRNA from alignment at H-paniculata_contig13922:1079..6676-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13922.2403.1 ID=mRNA_H-paniculata_contig13922.2403.1|Name=mRNA_H-paniculata_contig13922.2403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5598bp|location=Sequence derived from alignment at H-paniculata_contig13922:1079..6676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCATCGGCTGCTGCGGCGCCGTCGGTGGTCGTGGTCGTAGCAGTGACTG ACGAAGCTTGTCTTGTGCATGACCAGACGGCGCTTGCAGTTACTACGGAA CGATACCTGTAAGAAGCAAAGGGCTACGCATACTCGACCTACGGCAGCAG AGGCAGCCGTACTAAACATCCGCAGCCGCAGCCGCGCGGAATTTGAACGG CGCCGAATCAATCAAGCGTCTGGGAGCAAGGGGTACAACACTTGAAAAAA AAACAAAAAAAAAACGTGCGGCTCAGACGTGCGGCAGAGCAGCGGACACC TCGTTTTCTGTCTTCTTCTGCTTGTTCTTTCGTTCAAATGGCGTTTATGC TGCGGAGGCATGGCCGTTCGGCCGCGACTAAAACAGCCTCCATTGCTCGC TGCACCCGTGGACCAACCTCGTGTGTACACGCCGCCGCAAGCGACCACAA ATCCTTCCGCTTCGTGAACGCGTTCTCCAGAAATCGTAGCAGCAGCAGCT GCAGCAATAGCAGTCTGTCGTCGGTCGCTGATTTCCCCACCACCCTGGGC GCGGTGTGTACTGACAACCAACGTGACACTGCTGCATTGGTGACGTCAGC TTGGGCGGCGGCGGCGGCTACAACAGATGTTGCTTCTATTACGACGCGAC ATACAACAAGAACAAAGCAACAGAGCGTGAGGGGACGTGCATGGGCGGGT GCTGCTGCGAGATGGCTTTGTTCCTCCACGTCGCCACCGACGACGCCAGA TGGAGGGAAACATGCAACGACAGAGTTGGTGGAAGAGGCGGGTGTTGCAG CTGGACAGTCGTTTGGGTCCATGCTGCGCTTCGGGACGATCGTGGAGGGC AAGGAAATGTTACCCGAAGAGTTCGAGGGGAAAGCTGTGCTTGTTGTCAA CACAGCGTCTTTGTGCGGGTAAGAACGGTCATGGAGAGGAGGGAAGAGTT CGAGGTTTTCTCTTTAGAAGAGGGGATTGTCCGAGGTGTGGAACGTTTAG CCTTGCGTGATGTATTAATCGCTTGGATGTTTTGAACATGTACTTGTACC GAACAACTCCAGACCGCTGGATCCTGCTTTTTGTTTTTCTTTTATTGCTC GATGGTCGCCTGGCTTGGAACATGATGACAGCCGAAGGTGACGGGTGCTT TTTTATTTATCCCTCCTCAACATGGATTTTTTTTTCGACTACAGGAAAAA TAGATATTTTTCCGTCTCTGTTTGTTTGTTCTTAGCACATGTTTCCACCT GGCGTGGCTGGCATACATATGTCAGATCACGCTCATCAAATTACTCTTTA AAAAACCTACACTATTTCATTCATAGTTCGTCTGGTATGCACACGTCGTC AATAGAGGGTGCAACACGTGAGGTGAGATAAGGTGTCGACGTCAACGAAA GCTCATGCTTCGTCTGCGGACAAGAGTTGGATCTCCGAAGACATTACCAG TTTTATTTTTTACGAAAGTTTCAACGTTATTGCCATGTGAGTTACGAGAA GAAAAAAAAAATGTGCGGTTTTGTTGTAGTAGTAAACAGGCCGGCGGAGA AGAACGTTTTGAGAATTCAATACCTTTATTGGGAATCTCTGGAGATGACG TGGTTCAACAAGAGAAGTTGAAATCATTCGTTGTGTCGTAACGATCCGAC AACAACGAGCGAGACAAGACATTCAGTTGCATAACTTGGAAATGACCTAA GGCTTCGTACTCCGCTGTGAACGTTCTTGTGCTCACCTTCAACCTGCGCT CACCTTCAACCTGCGCTCACCTTCAACCTGCGCCCACCTTCAACCTGCGC AGTAACCCGAGGATCACCCAAGAGGGACGTCTAGGTCCATAGCTCAGAAT GAATGTAGCGGAAGTCGCCAGGAAATTCTTGCGGTCATCCCTTGGCGTGT CTTTTTTTTTTTTTTTTATCTTGTGGACCGGTTGAGCAGTACATGTAGAC TCAATTCCTTTGAACCTTCCACCTCCCCTTGGGCATGGAGAAGGCCATGC CAGTATGTCCCTCGAGCTTGTTGACCTTGGTAAAAGAGCGTACACACACC CTCTAGGATATCTGCTGAACTGATGGTGAGAAGTGACTAGTAGGTCTAAA AAATGGTGAACCATCTGTGGAGAGCTGGTTCGCGTATCTCAATTTCCGTT AGTAGTGCGTGTTATTGCCGACAGCGGCCTTATTCCCTTGGAGTTAATAT AAAGCAAGATGCGGAGGAGTCTTACCTCTTCAATTGATGCTGTATTATAG CTGTTGTTGACTAGATAGTGGACAAACCACGAGAACGTTTCTCGGTCTTC AATATCCCTCTATTAACCCGTTGGAAGCCAATCTGTGAACCCCTAGTCAG ACGTCTACGTAAAAGATAACGTCTACCTCAAGCTTCGATAAAAACATATA TCGCGCACCGCGTTGCGTCATTTCATACACAGGGGTTTAATGCCACTCCT CCTTTTGCTACGTCCAGGCTCACGCCACAGTTGAAGGAGCTGCAGATGGT ACATACGCGCTTCTCCACAGAAGGTCTAGTGGTGCTGGGAGTCCCTTCTA ATGACTTTGGCGCGCAGGAGGTACGGGAGGCGCATGGAAATATTGAAATT CGTACACACGGGCGGGCGACTACTGTAGTGTGCATCTGTGTGGGTTATTA GAACGTACATGTGACCTGTAACGTTTTCTTGTTTTTCCTTGAAAGGAGAG GAGGAAACCTTTGCCCAACACTTACCCCGATATTCGGGTTCGTGTGTCGG TTGCCCGAAGGTCCAACTAGACAACCTGATGGCTGTCCTGTGGGAAAGGC ACCCTGAGCGTTCGCCCGCCCTTTGCTCAGGGTAGTGTGGGACTCGCACC CACTAAAACCCCCTATGTTGTTCCCCTTAACTTGGCGCAGTACACGCGCC GCCCTGCTCAGTGAGCTTCGGCCCTAGGACCTGTAACTTTGTTGGCAGGG CGCGTGTTTGTATGCAGTTCGTGTCGTGGTGATGGAAGGTGTCATAATTT GTGTTGGCACAGAGCATGCTCAGGGGAATCATTTATTTGCAGAAATACAC ATAACATTTTCACAGGAAGTTGACCCTCTAAGCCAACCTTCATGCCATTC TCTCCAAGTAGACGAAGAATATTCGGAGGTGTGCTCGTACTCTTGATCAA AGTAAAATTGAACACTCCACGAAGGTGTGACGGAAGGACCGTCCTTCACG CTATTAATTTCTCTATGGATCGATTCGACGACTGTTGGAAGTTCCTTCCT TCAAACCAAGTATCATCGTGCCGTCACAATAGTCATGTTCCAAAATCCGC GGCGAGCTTCATGGGACTCCATCCGAGGTGCGAAAAATTGCAGCATGTAC GCAGGGGCAAATACTGTACTATATTACTGTGTGTGCTTTTAGCATATCGC AATATGTTCCAGCAGGATGTAAGTGTACGGGGGACCGTGATGAACCATCG CAAAATGGAGTTTGTGGAGTGCAGAATGTTTCTGGGCCTTGATACGCTAC TTGTTTCTTGATACACAGAAGCAGGTAGGGTTGCACTTGCCGTAAAAATG TGTACTGTTTCGTTTGTTTAACTCCCGTCAAGCAGTCTCCCTTTATTTGA ATTTATTTTGCTGATAAGTACAAGTATATACAATAAAGATTCGAGGGAAA CTGCATAACTTCAACATGGGTAAAGACGGATTGTTGGTATATGATCTACG GGCGTTATACATGGAGCTACTGACTGTAGCAGGTGGGTTGAATTGTGAAT AGGACTTGCGGTGTCCCTGACGTTTGTTCGTGTTATGGGTAAGTAATCCA ACGGCTTGAAGATGCTCAGCATACCTCACCCCCTTCCCCCTCCCCCCGGA ATGTCGTCATTCCGTGCTTCTTTTTCTTTTTGTCACCCAGCCATGGGAGG AAGAGAAGATTCTAGAATTTTACAAGAAGGATTTCGGGGTAACGTTCCCC CTCACCTCCAAGGTATGTACGTACAGGGGCGGCGACTTGCATTTCACAAA GTATATTCCAGTTTAGGATCAAACCCTGTCTGTACATGCTTCAGAATTCA TTGTTGTATATGTTCGCCTGTACCATGCGAGAACACGACGCACTCCAACG AGAGACTGGCCATCGAGGGGACACCGACTGTTCCGATAATTTGGTTCTAA ATCTTGGGATGTACAGTAGTAGTGGGGATGAACTGGTCATTATCCAGGGT CGAGGAAACAGCATTACCGGGGTGCAAGCGTTTTTCAAACGCGAAGACTA CCTGGAGAACAGAAGCATTACGCGTTTGAAATAATAACTCGTCAATCAAT CGGCAGATCTACCCACAACATATTTCCAACGGCACACTTTATTCATCGCC AGTAGCTGGCGCCGAAGTTCTCCAGATAGTCCCGTTTGAAAAGTAATCGC ACCCCGGTGATATCGATACTTACATCCGAGTTTGTTTTACGGTACTCTTC TAACAGCGACGTCAAGGGCTATACCCCTAACGTTTCCCCTTGCCTCCTTT CCTCCACCCTCCATGATGCTCGGCGTGCGCCCGTCCTGCATGATCCCTAC CCTTCTTTCGGTCCAGACGACTGTGCTAGGACCTGATGCCCATCCGCTGT ATGCGGGAGTTACCGCCGAGTTCGGGCCTGACGTAGGGCCCCAGTGAGTT ACCGCGGTCGTTTTTCTTGAATGGAGGGTGGATTTGCGGAAGGAAAGCGC ATCTAGTTTTCCAGGCGTTAATTTCGTGGTTCGTCCTTTCGTTCGTAAGC ATTGGGGAATGATCATTTTTGTTTTTTTGCATGACCGACTTTTTCGCGTG CGCTCAGATGGAATTTCCACAAGCTGCTTGTAGGACCGGACGGCACGCTT GCTGCGGTGAGTGATTTTCCCCCTCTCCTGCACGTTTTGTCCAATCGCTC AGGTTCACGGTCAGAAGATATCATTACGCCGTGTTTGGTCGACGAGTTTG GGTGCAAATGGCTTCAATGTCGTTGTTTTCGTAAAGCTGTACAACAATAT ATGAGGTCTTGAACGTTATACGACGTGAGACTGCTTTCTCATCGTTGGGA CGTTGGTGTACAGTAAGATAGAGGCCTTCTTCTTTCCCTATTTTTTGCGT CAGTCGAGTTTTCCGATATGTACGTGTTTTGGAGGGGGGAGGGCGCGGGG ATTAGTTTTGTTGTGTTCTAACGATATGTCCCTCTTGTGCGTCTGCCAAA TTGCCTGTTTGTTTGTTTTTTGGTCAGGTTTTCGGTTCCAATCTCAGCCC GTTGGAGCCGGATGTAACGGAGGCAATAGAGGAATGCCTCCGAGAAAAGA AAAAAGATCCTGCTTGACGGGTGTTTCCCCCGAAAAAGAAGTAGCTGGAG AAAATGGATTCAAGGCTATATGCGATATATGGGCTTGACTTACCCCCGGA TGACTGTAGTAGAAATACAACAGATTGTGTGACAAACCGTCAGGCGGGTT GACTTCTTTTTTTTTATACGGTCGATTGGCTGTTGCTGGGTCACGCGACG TCTATCCCCGACACACAATCGAAAAATTCTTTTACCCCCTTTGGTACAGA CAGCATGAACATGCCATGAATTATATTTATCTTGCAAACTATCATACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13922:1079..6676-

>mRNA_H-paniculata_contig13922.2403.1 ID=mRNA_H-paniculata_contig13922.2403.1|Name=mRNA_H-paniculata_contig13922.2403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig13922:1079..6676- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTTTATGCTGCGGAGGCATGGCCGTTCGGCCGCGACTAAAACAGC
CTCCATTGCTCGCTGCACCCGTGGACCAACCTCGTGTGTACACGCCGCCG
CAAGCGACCACAAATCCTTCCGCTTCGTGAACGCGTTCTCCAGAAATCGT
AGCAGCAGCAGCTGCAGCAATAGCAGTCTGTCGTCGGTCGCTGATTTCCC
CACCACCCTGGGCGCGGTGTGTACTGACAACCAACGTGACACTGCTGCAT
TGGTGACGTCAGCTTGGGCGGCGGCGGCGGCTACAACAGATGTTGCTTCT
ATTACGACGCGACATACAACAAGAACAAAGCAACAGAGCGTGAGGGGACG
TGCATGGGCGGGTGCTGCTGCGAGATGGCTTTGTTCCTCCACGTCGCCAC
CGACGACGCCAGATGGAGGGAAACATGCAACGACAGAGTTGGTGGAAGAG
GCGGGTGTTGCAGCTGGACAGTCGTTTGGGTCCATGCTGCGCTTCGGGAC
GATCGTGGAGGGCAAGGAAATGTTACCCGAAGAGTTCGAGGGGAAAGCTG
TGCTTGTTGTCAACACAGCGTCTTTGTGCGGATGGCGTTTATGCTGCGGA
GGCATGGCCGTTCGGCCGCGACTAAAACAGCCTCCATTGCTCGCTGCACC
CGTGGACCAACCTCGTGTGTACACGCCGCCGCAAGCGACCACAAATCCTT
CCGCTTCGTGAACGCGTTCTCCAGAAATCGTAGCAGCAGCAGCTGCAGCA
ATAGCAGTCTGTCGTCGGTCGCTGATTTCCCCACCACCCTGGGCGCGGTG
TGTACTGACAACCAACGTGACACTGCTGCATTGGTGACGTCAGCTTGGGC
GGCGGCGGCGGCTACAACAGATGTTGCTTCTATTACGACGCGACATACAA
CAAGAACAAAGCAACAGAGCGTGAGGGGACGTGCATGGGCGGGTGCTGCT
GCGAGATGGCTTTGTTCCTCCACGTCGCCACCGACGACGCCAGATGGAGG
GAAACATGCAACGACAGAGTTGGTGGAAGAGGCGGGTGTTGCAGCTGGAC
AGTCGTTTGGGTCCATGCTGCGCTTCGGGACGATCGTGGAGGGCAAGGAA
ATGTTACCCGAAGAGTTCGAGGGGAAAGCTGTGCTTGTTGTCAACACAGC
GTCTTTGTGCGGGCTCACGCCACAGTTGAAGGAGCTGCAGATGGTACATA
CGCGCTTCTCCACAGAAGGTCTAGTGGTGCTGGGAGTCCCTTCTAATGAC
TTTGGCGCGCAGGAGGCTCACGCCACAGTTGAAGGAGCTGCAGATGGTAC
ATACGCGCTTCTCCACAGAAGGTCTAGTGGTGCTGGGAGTCCCTTCTAAT
GACTTTGGCGCGCAGGAGCCATGGGAGGAAGAGAAGATTCTAGAATTTTA
CAAGAAGGATTTCGGGGTAACGTTCCCCCTCACCTCCAAGCCATGGGAGG
AAGAGAAGATTCTAGAATTTTACAAGAAGGATTTCGGGGTAACGTTCCCC
CTCACCTCCAAGACGACTGTGCTAGGACCTGATGCCCATCCGCTGTATGC
GGGAGTTACCGCCGAGTTCGGGCCTGACGTAGGGCCCCAACGACTGTGCT
AGGACCTGATGCCCATCCGCTGTATGCGGGAGTTACCGCCGAGTTCGGGC
CTGACGTAGGGCCCCAATGGAATTTCCACAAGCTGCTTGTAGGACCGGAC
GGCACGCTTGCTGCGATGGAATTTCCACAAGCTGCTTGTAGGACCGGACG
GCACGCTTGCTGCGGTTTTCGGTTCCAATCTCAGCCCGTTGGAGCCGGAT
GTAACGGAGGCAATAGAGGAATGCCTCCGAGAAAAGAAAAAAGATCCTGC
TTGAGTTTTCGGTTCCAATCTCAGCCCGTTGGAGCCGGATGTAACGGAGG
CAATAGAGGAATGCCTCCGAGAAAAGAAAAAAGATCCTGCTTGA
back to top