mRNA_H-paniculata_contig13901.2391.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: A0A6H5JKK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK2_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.460e-41 Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 DEL+YP+SVT+IFRITDDIY+A GM GD RYQVKRARLQ+LEYKRQYGSPMPSRLL LAMADAAQVNTQHAA+RPMACVS II Sbjct: 25 DELVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAALRPMACVSLII 108
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: D7G2X4_ECTSI (Proteasome Alpha Subunit family member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X4_ECTSI) HSP 1 Score: 144 bits (362), Expect = 2.950e-40 Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 DEL+YP+SVT+IFRITDDIY+A GM GD RYQVKRARLQ+LEYKRQYGS MPSRLL LAMADAAQVNTQHAA+RPMACVS II Sbjct: 65 DELVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLQALEYKRQYGSSMPSRLLALAMADAAQVNTQHAALRPMACVSLII 148
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: D7FPB2_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB2_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 2.350e-13 Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 D LI P SVT IF+ITD I GM D+R V+R R ++ E++ +YG P+ +L +AD AQV TQ A+MR +ACV+ +I Sbjct: 56 DRLIDPTSVTNIFKITDKIGCLMTGMIADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLI 139
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: A0A7S0KY45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KY45_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.790e-12 Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 D L+ PESVT +F IT I G+ D + V+RAR ++ ++ G P+P L MAD AQVNTQ A+MRP+AC++ ++ Sbjct: 66 DRLMCPESVTHLFAITPKIGCCVTGVMADCKNFVQRARYEAAQFTFDNGYPIPVSSLAKRMADLAQVNTQSASMRPLACIALLV 149
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: A0A401PTT6_SCYTO (Uncharacterized protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PTT6_SCYTO) HSP 1 Score: 68.6 bits (166), Expect = 2.110e-12 Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 D+L+ +VT +FRIT++I GM D+R QV+RAR ++ +K +YG +P +L +AD +QV TQ+A MRP+ C ++ Sbjct: 1 DKLLDANTVTHLFRITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYDIPVDMLCKRIADISQVYTQNAEMRPLGCCMILV 84
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: F2TYH4_SALR5 (Proteasome subunit alpha type n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TYH4_SALR5) HSP 1 Score: 69.3 bits (168), Expect = 2.490e-12 Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 D+L+ P+++T +F+IT ++ GM DAR QV+RAR ++ E+K ++G MP + +AD +Q+NTQ A +RP+ +I Sbjct: 58 DKLLVPDTITHMFKITQNVGCVMTGMIADARSQVRRARYEAAEFKYRFGYDMPIDQVAKRVADLSQINTQEAGLRPLGSTMILI 141
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: A0A7K9C5Z9_9PICI (Proteasome subunit alpha type (Fragment) n=23 Tax=Gnathostomata TaxID=7776 RepID=A0A7K9C5Z9_9PICI) HSP 1 Score: 68.9 bits (167), Expect = 3.520e-12 Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 D+L+ +VT +FRIT++I GM D+R QV+RAR ++ +K +YG +P +L +AD +QV TQ+A MRP+ C +I Sbjct: 59 DKLLDSNTVTHLFRITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYDIPVDMLCKRIADISQVYTQNAEMRPLGCCMILI 142
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: A0A7L3GME2_9AVES (PSA6 protein (Fragment) n=1 Tax=Anhinga rufa TaxID=317792 RepID=A0A7L3GME2_9AVES) HSP 1 Score: 66.2 bits (160), Expect = 4.500e-12 Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMAC 237 D+L+ +VT +F+IT++I GM D+R QV+RAR ++ +K +YG +P +L +AD +QV TQ+A MRP+ C Sbjct: 46 DKLLDSNTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYDIPVDMLCKRIADISQVYTQNAEMRPLGC 124
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: A0A7S1D805_CYCTE (Proteasome subunit alpha type n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D805_CYCTE) HSP 1 Score: 68.2 bits (165), Expect = 6.690e-12 Identity = 33/84 (39.29%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 D L+ PESVT +F I++ + G D + ++RAR ++ ++K +G P++++ MAD AQVNTQ A+MRP+AC++ +I Sbjct: 55 DRLMKPESVTHLFAISNKVGCCITGNMADGKNFIQRARYETSKWKYDHGYNTPAKVVAKRMADLAQVNTQRASMRPLACMALLI 138
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Match: A0A091NHQ4_APAVI (Proteasome subunit alpha type-6 (Fragment) n=66 Tax=Neognathae TaxID=8825 RepID=A0A091NHQ4_APAVI) HSP 1 Score: 67.8 bits (164), Expect = 6.970e-12 Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 1 DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSPMPSRLLTLAMADAAQVNTQHAAMRPMACVSFII 252 D+L+ +VT +F+IT++I GM D+R QV+RAR ++ +K +YG +P +L +AD +QV TQ+A MRP+ C +I Sbjct: 34 DKLLDSNTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYDIPVDMLCKRIADISQVYTQNAEMRPLGCCMILI 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13901.2391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13901.2391.1 >prot_H-paniculata_contig13901.2391.1 ID=prot_H-paniculata_contig13901.2391.1|Name=mRNA_H-paniculata_contig13901.2391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp DELIYPESVTAIFRITDDIYAACIGMDGDARYQVKRARLQSLEYKRQYGSback to top mRNA from alignment at H-paniculata_contig13901:4773..6567- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13901.2391.1 ID=mRNA_H-paniculata_contig13901.2391.1|Name=mRNA_H-paniculata_contig13901.2391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1795bp|location=Sequence derived from alignment at H-paniculata_contig13901:4773..6567- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13901:4773..6567- >mRNA_H-paniculata_contig13901.2391.1 ID=mRNA_H-paniculata_contig13901.2391.1|Name=mRNA_H-paniculata_contig13901.2391.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig13901:4773..6567- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |