mRNA_H-paniculata_contig13892.2386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13892.2386.1
Unique NamemRNA_H-paniculata_contig13892.2386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A6H5JN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN34_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.360e-25
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 1
Query:   25 SGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            SGPVEIVK+GA VA  +G +ALLQFAAVISVNLAVINSLPVPGLDGGQMVF+LAE++S +KLDR
Sbjct:  165 SGPVEIVKVGAQVAKSEGPSALLQFAAVISVNLAVINSLPVPGLDGGQMVFVLAEIVSGKKLDR 228          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: D7G8B2_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B2_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.880e-24
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1
Query:   25 SGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            SGPVEIVK+GA+VA  +G +ALLQFAAVISVNLAVINSLPVPGLDGGQMVF+LAE++S +KLDR
Sbjct:  335 SGPVEIVKVGAEVARSEGPSALLQFAAVISVNLAVINSLPVPGLDGGQMVFVLAEIVSGKKLDR 398          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A836CJP0_9STRA (Peptidase family M50-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJP0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.510e-18
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1
Query:   16 KNRSGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            +N SGPV +V+ GAD+A  DGA ALLQFAA+ISVNLAVIN+LP+PGLDGGQ+ F+  E ++ ++L R
Sbjct:  521 ENLSGPVGVVRQGADLARYDGALALLQFAAIISVNLAVINALPIPGLDGGQLAFLAVEAVNGKRLQR 587          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A1D2AD28_AUXPR (Peptidase_M50 domain-containing protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AD28_AUXPR)

HSP 1 Score: 77.0 bits (188), Expect = 1.980e-16
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    4 EETNKNRSGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLD 213
            + T+K  SGP+ I+++GADVA  D A  L QFAA+I++NLA++NSLP+P LDGG +VF++ E +  RKLD
Sbjct:   24 QRTSKAVSGPLGILRVGADVARNDSAG-LFQFAALINLNLAIVNSLPLPALDGGYLVFLILEAVRGRKLD 92          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A7S4QF79_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QF79_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.290e-15
Identity = 34/67 (50.75%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   16 KNRSGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            ++ SGP+ +++ GAD+ + +   A++ FAA IS+NLAV+NSLP+P LDGGQ+VF+LAE ++ RK+D+
Sbjct:  437 QSMSGPIGVIRTGADIVSSNDFTAVIMFAAAISINLAVVNSLPLPALDGGQLVFVLAEAVAGRKIDQ 503          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A7S1ZTZ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZTZ4_TRICV)

HSP 1 Score: 78.2 bits (191), Expect = 3.340e-15
Identity = 37/64 (57.81%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   25 SGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            SGP+ ++K G+DV + + A A++ FAA IS+NLAVINSLP+P LDGGQ+ F+LAE +S RK+D+
Sbjct:  519 SGPIGVLKAGSDVVSTNDARAVVAFAAAISINLAVINSLPLPALDGGQLAFVLAEGVSGRKIDQ 582          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A7S3KYW3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KYW3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.760e-15
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 SGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            SGP+ ++K G+DV      AA+L FAA +S+NL VIN+LP+P LDGGQ++F++AE ++ RK+D+
Sbjct:   75 SGPIGLIKTGSDVVATKDIAAVLLFAAALSINLGVINALPLPALDGGQLLFVIAEALTGRKVDQ 138          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A3M7KPF8_AUXPR (PDZ domain-containing protein (Fragment) n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KPF8_AUXPR)

HSP 1 Score: 77.0 bits (188), Expect = 7.540e-15
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    4 EETNKNRSGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLD 213
            + T+K  SGP+ I+++GADVA  D A  L QFAA+I++NLA++NSLP+P LDGG +VF++ E +  RKLD
Sbjct:  313 QRTSKAVSGPLGILRVGADVARNDSAG-LFQFAALINLNLAIVNSLPLPALDGGYLVFLILEAVRGRKLD 381          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: K0RWR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWR5_THAOC)

HSP 1 Score: 77.0 bits (188), Expect = 8.480e-15
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   25 SGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            SGPV ++K GADV      +A++ FAA IS+NLAV+NSLP+P LDGGQ++F+LAE  S RK+D+
Sbjct:  484 SGPVGVIKSGADVVKSSDLSAVVAFAASISINLAVVNSLPLPALDGGQLLFVLAEAASGRKIDQ 547          
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Match: A0A7J7ING4_9RHOD (PDZ domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ING4_9RHOD)

HSP 1 Score: 76.3 bits (186), Expect = 1.450e-14
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    1 IEETNKNRSGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVPGLDGGQMVFILAELISRRKLDR 216
            ++E  K  SGP+ +  +GA++A  D AA L QFAAVISVNLA+IN+LP+P LDGGQM F++ E I  + L R
Sbjct:  318 LKENGKELSGPLGVASMGAEIARHD-AAVLFQFAAVISVNLAIINALPLPALDGGQMAFLIVEAIRGKPLPR 388          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13892.2386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN34_9PHAE2.360e-2581.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8B2_ECTSI1.880e-2481.25PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CJP0_9STRA3.510e-1862.69Peptidase family M50-domain-containing protein n=1... [more]
A0A1D2AD28_AUXPR1.980e-1654.29Peptidase_M50 domain-containing protein (Fragment)... [more]
A0A7S4QF79_9STRA1.290e-1550.75Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1ZTZ4_TRICV3.340e-1557.81Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3KYW3_9STRA6.760e-1551.56Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A3M7KPF8_AUXPR7.540e-1554.29PDZ domain-containing protein (Fragment) n=3 Tax=A... [more]
K0RWR5_THAOC8.480e-1557.81Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7J7ING4_9RHOD1.450e-1454.17PDZ domain-containing protein n=1 Tax=Cyanidiococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13892contigH-paniculata_contig13892:5752..5970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4e-20
Seed eggNOG ortholog2880.D7G8B2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGs2QT40@2759,COG0750@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.6583006-CDS-H-paniculata_contig13892:5751..59701622929103.6583006-CDS-H-paniculata_contig13892:5751..5970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13892 5752..5970 -
1691480732.7948654-CDS-H-paniculata_contig13892:5751..59701691480732.7948654-CDS-H-paniculata_contig13892:5751..5970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13892 5752..5970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13892.2386.1prot_H-paniculata_contig13892.2386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13892 5752..5970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13892.2386.1

>prot_H-paniculata_contig13892.2386.1 ID=prot_H-paniculata_contig13892.2386.1|Name=mRNA_H-paniculata_contig13892.2386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
IEETNKNRSGPVEIVKIGADVATEDGAAALLQFAAVISVNLAVINSLPVP
GLDGGQMVFILAELISRRKLDR*
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mRNA from alignment at H-paniculata_contig13892:5752..5970-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13892.2386.1 ID=mRNA_H-paniculata_contig13892.2386.1|Name=mRNA_H-paniculata_contig13892.2386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig13892:5752..5970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAGGAAACAAACAAAAACAGGTCCGGTCCGGTGGAAATCGTCAAGAT AGGAGCAGACGTTGCCACCGAAGACGGCGCCGCTGCCCTGCTTCAGTTCG CAGCCGTCATCTCCGTCAACCTGGCTGTCATTAACTCTCTGCCTGTCCCG GGTCTCGACGGCGGACAGATGGTCTTCATCTTGGCAGAGCTGATCAGCAG ACGCAAGTTGGACCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13892:5752..5970-

>mRNA_H-paniculata_contig13892.2386.1 ID=mRNA_H-paniculata_contig13892.2386.1|Name=mRNA_H-paniculata_contig13892.2386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig13892:5752..5970- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGAGGAAACAAACAAAAACAGGTCCGGTCCGGTGGAAATCGTCAAGAT
AGGAGCAGACGTTGCCACCGAAGACGGCGCCGCTGCCCTGCTTCAGTTCG
CAGCCGTCATCTCCGTCAACCTGGCTGTCATTAACTCTCTGCCTGTCCCG
GGTCTCGACGGCGGACAGATGGTCTTCATCTTGGCAGAGCTGATCAGCAG
ACGCAAGTTGGACCGGTGAATCGAGGAAACAAACAAAAACAGGTCCGGTC
CGGTGGAAATCGTCAAGATAGGAGCAGACGTTGCCACCGAAGACGGCGCC
GCTGCCCTGCTTCAGTTCGCAGCCGTCATCTCCGTCAACCTGGCTGTCAT
TAACTCTCTGCCTGTCCCGGGTCTCGACGGCGGACAGATGGTCTTCATCT
TGGCAGAGCTGATCAGCAGACGCAAGTTGGACCGGTGA
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