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Homology
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI) HSP 1 Score: 153 bits (386), Expect = 7.070e-34 Identity = 95/233 (40.77%), Postives = 144/233 (61.80%), Query Frame = 1
Query: 1204 QAARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWLAIQLSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVSEKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFEKDHGDNVTRIEAVKARA 1893
+ AR+V ERGL VS E + LW SL++ EH+ G+ ++ K VS RAC++S+ V+ + E+H E+CE VF++ +K + R S++VW+A QLSRL+RG GA E L S+ L+R +V V+SRFA + F+ S +RGR ++E L+ +YP+RL+LW + E + G ++ RNL ERLT +D ++ + VF Y+ FE +HGD R+ AVKA+A
Sbjct: 2113 EGARAVCERGLKAVSFREEQERFNLWVSLINLEHKYGSRSTLKAVSERACQNSNPKKVYLHMAEMHEKAQES-----EECEEVFQAAVK--KFRHSQKVWVAYQLSRLKRGDDAGAREALKRSLQSLARHKHVSVISRFAQNEFEHGSVERGRSVFEGLMASYPKRLDLWNVYFDKEVKAGDLRAARNLLERLTG-MDFN-AKRMKGVFKKYLQFEMEHGDEA-RVNAVKAKA 2335
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.820e-33 Identity = 93/233 (39.91%), Postives = 144/233 (61.80%), Query Frame = 1
Query: 1204 QAARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWLAIQLSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVSEKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFEKDHGDNVTRIEAVKARA 1893
+ AR+V ERGL VS E + LW SL++ EH+ G+ A+ K VS RAC++S+ ++ + E+H E+CE VF++ +K + R S++VW+A QLSRL+RG GA E L S+ L+R +V V+SRFA + F+ S +RGR ++E L+ +YP+RL+LW ++ E + G ++ RNL ERL+ +D ++ + VF Y+ FE +HGD + AVKA+A
Sbjct: 2167 EGARAVCERGLKAVSFREEQERFNLWVSLINLEHKYGSRATLKTVSERACQNSNPKKIYLHMAEMHEKAQES-----EECEEVFKAAVK--KFRHSQKVWVAYQLSRLKRGDDAGAREALKRSLQSLARHKHVSVISRFAQNEFEHGSVERGRSVFEGLMASYPKRLDLWNVYLDKEVKAGDLRAARNLLERLSG-MDFN-AKRMKGVFKKYLQFEMEHGDEAG-VNAVKAKA 2389
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: UPI0003F0D44D (protein RRP5 homolog n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0D44D) HSP 1 Score: 92.4 bits (228), Expect = 2.030e-15 Identity = 69/231 (29.87%), Postives = 124/231 (53.68%), Query Frame = 1
Query: 1210 ARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWLAIQLSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVSEKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFEKDHGDNVTRIEAVKARA 1893
AR+V ER L T+S E + +W + L+ E+ GT + ++ RA + D VFR + I++ KT E+ E ++ + ++ K+VW + + ++ G + A +++ S L + D+V ++ +FA FKF +RGR ++E ++ YP+R ++W +I + GHI +R LFER+ L+L ++ + F Y+ FEK +G+ T +E VK +A
Sbjct: 499 ARAVAERALKTISFREEQEKLNVWVAYLNLENLYGTNETLVKLFERALQMCDPLKVFRSMINIYT----KTQK-LEEAEQLYSTMVRRFNFH--KDVWASYGMFLMKSGKLDAARKIMQRSFKSLDKSDHVEIIVKFAQFEFKFGEPERGRTMFENVLSNYPKRTDIWSIYIDMVIKQGHIDAIRQLFERVIH-LNLS-PKRMKFFFKRYLEFEKKYGEEST-VENVKQKA 719
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: A0A6A5KBN8_9PLEO (Nucleic acid-binding protein n=1 Tax=Decorospora gaudefroyi TaxID=184978 RepID=A0A6A5KBN8_9PLEO) HSP 1 Score: 75.5 bits (184), Expect = 5.210e-10 Identity = 59/236 (25.00%), Postives = 119/236 (50.42%), Query Frame = 1
Query: 1204 QAARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWLAIQ---LSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVS--EKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFEKDHGDNVTRIEAVKA 1887
+ AR + R L T++ E + +W +LL E++ + + V + AC+++D+ + + +I+ + G +K +++++S MKNK + WL+ + L+ A +L + ++ + ++ +FA FK + +RGR I+E LV +P++ ++W ++A E G +VR+LFER++K + + + + VF + +E G N +E VKA
Sbjct: 1547 EKARQIARRALATINPREEKEKMDVWTALLHLENDFASDDAVDSVFKEACQNNDSREMHERMIKIYL-----SSGKVDKADTLYQSMMKNKSFTPDPQFWLSYATFLMDVLQPPSPTRARALLQRATQSVASPQHRYLTQKFAALEFKSANGDAERGRTIFEGLVDTWPKKGDVWDMYVALEMSHGDQDKVRDLFERMSK---VGKSSRVKTVFKRWAEWESG-GGNRKGVEKVKA 1773
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: E3RY42_PYRTT (Uncharacterized protein n=8 Tax=Pyrenophora TaxID=5027 RepID=E3RY42_PYRTT) HSP 1 Score: 73.6 bits (179), Expect = 2.020e-9 Identity = 60/241 (24.90%), Postives = 121/241 (50.21%), Query Frame = 1
Query: 1204 QAARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWL---AIQLSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVS--EKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFEKDHGDN--VTRIEAVKARAR 1896
+ AR V R L T++ E + +W +LL E++ + + + V + AC+++D+ + + +I+ + G +K +S+++S MKNK + + WL A + L+ A +L + ++ + ++ +FA FK + +RGR I+E LV + ++ ++W ++ E G +VR+LFER+TK + + + R VF + +E G V R++ ++ + R
Sbjct: 1549 EKARQVARRALVTINPREEKEKLDVWTALLHLENDFASDDTIEGVFKEACQNNDSREMHERMIKIYI-----SSGKLDKADSLYQSMMKNKSFTQDPKFWLSYAAFLMDVLQPPSASQARALLQRATQSVASTQHRYLTQKFAALEFKSPNGDAERGRTIFEGLVDTFAKKGDVWDMYLMLEQSHGDEDKVRDLFERMTK---VGKSSRVRSVFKKWAEWENGVGSKKGVERVKMLEEQWR 1781
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: A0A293LCF4_ORNER (Uncharacterized protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LCF4_ORNER) HSP 1 Score: 72.0 bits (175), Expect = 5.500e-9 Identity = 60/221 (27.15%), Postives = 111/221 (50.23%), Query Frame = 1
Query: 1204 QAARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWLAIQLSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVSEKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFEKDHGD 1857
+ AR V +R L T+S E + +W +L++ E+ GT + + A + +D +V + + +I+ SK E+ E +F+ RS EV L ++ G + A +L ++ L R +V ++S+FAL FK+ ++RG+ +++ ++ YP+R +LW +I + G ++ VR LF + T + + F ++ FEK HGD
Sbjct: 1040 EKARRVADRALHTISFREETEKLNIWKALVTLENTYGTKETLQVAFGEALKCNDGLTVHKHLMQIYV-ASSKN----EEAEQLFKRMFIKY---RSPEVCLLGGTFYMKLGKLEEARALLQRALKCLERQHHVGLISKFALMEFKYGDQERGKSMFDNILVNYPKRTDLWSVYIDILIKQGDVEGVRTLFAKATS--SKFQPTKMKIFFKKWLDFEKGHGD 1250
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: R0K2J8_SETT2 (Uncharacterized protein n=1 Tax=Setosphaeria turcica (strain 28A) TaxID=671987 RepID=R0K2J8_SETT2) HSP 1 Score: 68.9 bits (167), Expect = 5.230e-8 Identity = 54/227 (23.79%), Postives = 109/227 (48.02%), Query Frame = 1
Query: 1204 QAARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWLAIQ---LSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVS--EKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFEKDHGDN 1860
+ AR + R L T++ E + +W +LL E++ + + V + AC+++D V + +I+ + G +K + +++S MKNK + WL+ + ++ A +L + ++ + ++ +FA FK + +RGR I+E LV + ++ ++W ++ E G +VR+LFER+TK + + R VF + +E +N
Sbjct: 1554 EKARQIARRALATINPREEKEKLDVWTALLHLENDFASDDAITSVFKEACQNNDAREVHERMIKIYI-----SSGKIDKADQLYQSMMKNKSFTPDPKFWLSYATFLMDVVQPPSPTRARALLQRATQSVAAPQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVDTFAKKGDVWDMYLMLEQSHGEPDKVRDLFERMTK---VGKASRIRSVFKKWAEWENSVANN 1772
BLAST of mRNA_H-paniculata_contig1389.2384.1 vs. uniprot
Match: M2T7N9_COCSN (Uncharacterized protein n=7 Tax=Bipolaris TaxID=33194 RepID=M2T7N9_COCSN) HSP 1 Score: 68.6 bits (166), Expect = 6.850e-8 Identity = 53/221 (23.98%), Postives = 108/221 (48.87%), Query Frame = 1
Query: 1204 QAARSVGERGLTTVSAPEGGK---LWASLLSAEHELGTAASFKEVSRRACEDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVWL---AIQLSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVS--EKRGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLMMTEQAREVFNMYVSFE 1842
+ AR + R L T++ E + +W +LL E++ + + V + AC+++D + + +I+ + G +K + +++S MKNK + WL A + ++ A +L + ++ + ++ +FA FK + +RGR I+E LV + ++ ++W ++ E G +VR+LFER+TK + + + R VF + +E
Sbjct: 1554 EKARQIARRALVTINPREEKEKLDVWTALLHLENDFSSDDAINAVFKEACQNNDDREIHERMIKIYI-----SSGKIDKADELYQSMMKNKSFTADPKFWLSYAAFLMDVIQPPSPARARALLQRATQSVAAPQHRYLTQKFAALEFKSPNGDTERGRTIFEGLVDTFAKKGDVWDMYLMLEQSHGESDKVRDLFERMTK---VGKSSRIRGVFKKWAEWE 1766
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 160.2 |
| Seed ortholog evalue | 2.9e-36 |
| Seed eggNOG ortholog | 2880.D7FRR9 |
| Preferred name | RRP5 |
| KEGG ko | ko:K14792,ko:K20353 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904 |
| EggNOG free text desc. | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| EggNOG OGs | COG0539@1,KOG1070@2759 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03009,ko04131 |
| Exons | 6 |
| Model size | 2921 |
| Cds size | 1797 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1389.2384.1 >prot_H-paniculata_contig1389.2384.1 ID=prot_H-paniculata_contig1389.2384.1|Name=mRNA_H-paniculata_contig1389.2384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=599bp
MFDDGEHAIDRRRKCAHEGCSTKPCFGVMGSTTAKFCARHSETGMVDVMN
RTCVVEGCFKQPHYGVPGSKTGKFCALHSADGTADVTTKPCAHDGCSTQP
FFGVWGTKRAEYCVRHKKRDMVNIWAKMCSQGGCTKTASFGVEGTTIREF
CATHKKLLMVNLLRRMCSHPTCHSTAAFSTPGRSAADFCEIHAAAGMVDV
RRSRCAYPDCRKLGKRGQDGKSKAFCPFHTNSRAGAVSASAAVLEAAAAA
ATVEAARKNPDDRSNHGKPSATAVASAPIASSRVTRLSATDSAITSSRVT
RLSATGSAITSSRVTRLSATGSGDGIAKRVCCVAPRQRPPPQPLAVTGIG
SSSQAARSVGERGLTTVSAPEGGKLWASLLSAEHELGTAASFKEVSRRAC
EDSDTSSVFRCVGEIHSDYDSKTDGWCEKCESVFRSTMKNKQCRRSKEVW
LAIQLSRLRRGYVVGAWEVLLLSVDYLSRDDYVFVVSRFALHNFKFVSEK
RGREIYECLVQAYPERLELWKGFIAAETETGHIQRVRNLFERLTKELDLM
MTEQAREVFNMYVSFEKDHGDNVTRIEAVKARARKSLTMTKKRLLPSD* back to topmRNA from alignment at H-paniculata_contig1389:11599..17929- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1389.2384.1 ID=mRNA_H-paniculata_contig1389.2384.1|Name=mRNA_H-paniculata_contig1389.2384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6331bp|location=Sequence derived from alignment at H-paniculata_contig1389:11599..17929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCTGCTCAAGCCGTGACAGGGTGATCGCAGGTGCAAATATACGAGGC
GGTGATTATAGCACACTGATGGCAAGTTTTTTACCCGGGGTTCTTGTTGA
TCCGAGTGTAATTATTCCGTACCCCGTGGTATTCTCTCCCACTCATGTTT
GATGATGGTGAACATGCTATAGACAGAAGGCGGAAGTGCGCTCACGAAGG
CTGCTCCACAAAGCCATGCTTCGGAGTGATGGGTAGCACGACGGCAAAGT
TCTGTGCCCGACACTCTGAGACGGGTATGGTTGACGTCATGAACCGAACC
TGTGTGGTAGAAGGTTGTTTCAAGCAGCCGCACTATGGTGTTCCTGGCAG
TAAGACGGGAAAATTTTGCGCCCTACATTCTGCAGACGGCACAGCAGATG
TGACGACCAAGCCATGCGCTCACGATGGGTGCTCCACACAGCCTTTTTTC
GGCGTGTGGGGTACCAAACGTGCGGAGTACTGCGTACGCCACAAGAAGAG
GGACATGGTAAACATTTGGGCCAAGATGTGTTCGCAAGGGGGTTGTACCA
AGACAGCGTCGTTCGGCGTAGAGGGCACCACGATCAGAGAATTCTGCGCC
ACCCACAAGAAGCTTCTCATGGTGAACCTCTTGAGGAGAATGTGCTCTCA
CCCCACCTGCCACTCGACGGCGGCCTTCTCCACGCCAGGGAGAAGCGCGG
CGGACTTCTGCGAAATCCACGCAGCAGCTGGCATGGTGGACGTGCGGAGG
TCGCGGTGCGCTTACCCTGACTGCAGGAAGCTAGGGAAGCGAGGTCAAGA
CGGCAAGAGCAAGGCGTTTTGCCCGTTCCACACGAACAGCAGGGCCGGGG
CTGTATCGGCATCAGCAGCGGTACTCGAGGCGGCAGCTGCGGCAGCTACG
GTGGAAGCGGCCAGGAAGAATCCCGACGACAGAAGCAATCACGGAAAACC
CAGCGCCACCGCGGTCGCCTCCGCCCCCATCGCAAGTTCTCGCGTTACCC
GATTGAGTGCCACGGACAGCGCCATCACTAGTTCTCGCGTTACCCGATTG
AGTGCCACGGGCAGCGCCATCACTAGTTCTCGCGTTACCCGATTGAGTGC
CACGGGCAGCGGTGACGGTATTGCTAAGCGTGTCTGCTGCGTTGCACCAC
GGCAACGGCCACCACCACAACCGCTGGCTGTCACGGGGATTGGTTCATCG
TCTCAGGTGTGTAAATCTCGGAGGATAGCGGTGGTTATTTGATTGAGGGC
GTTTTTGGCTTTCATAGTGCTCGTTTAATCCTCGAAGGACCTTTGTCTAC
CGAAGCTACATCGATCCAGTGATTTTTAGCACCGGTACAATGCTGTTAGG
TGATGGCAAATGCTAGGACATTGTTCCTGGTTCAGTGATGAAATGACCTC
CTTTTTTATCCTCGTGCCAACTTACTTTCAATTTCCTCTTTGCCCCCTTT
AGCCGAACTCTTCAGCTCGCGACTTGTTTTCCAACGCATCGCATCCTCTT
AGGTGTTGTTGCCCCCGCAATTATGCGAGTACCATTCTCGGGAAGGACGA
ATTCTTCGAAACAAGGTGGCTACGCCGACGAATTTCTCCCTGTGGCCGCG
ACACGTGGACCACAACTTGTCTCTTTCCAATGCGGATATATATATCCGGC
AGAGTCACGACGGCTTTCCGCGAAATAATGCTCGATCATACAGTGTGCAC
GCTGTAGATGAGCTGGGGCATGTACACCCACCAGGCAACTCAGCACGCTG
ATACAAAAATCGTCCGGGCTTACAAATGTCATATGGTTGTCTCGGAACAC
AACATCACACGCGAAACCGGTCATGGAGTGCTTTCTGACTGGGCGAAAAC
TACCGAATGACGGTCTAGGAATACCCGCCCTGGCCTGTTATCATGTGTAG
GCGGCGCGATCTGTTGGCGAGAGGGGCCTGACGACTGTATCTGCCCCGGA
AGGTGGAAAACTGTGGGCATCGTTGCTCAGCGCGGAGCACGAGCTCGGCA
CCGCCGCGTCTTTCAAGGAGGTTTCCCGGCGTGCTTGCGAAGACTCGGAC
ACATCCAGTGTTTTTCGTTGCGTTGGAGAGGTATAAAGATATGCTTGATT
TTGTACTTGCACACCTACGCACCACGTGAAACACTGCTTAACAGTATTCT
TTGGTTACTCCGCCGTTCACTGAAGAACTGGTTGCTGGCGGATTGTTCTT
GACTTTGTCAAATTTCTTTTCGCTTCTGCGAGTAATTTTGTGACGAAAGT
ACCCTAGTGAACAGACTGGTTTTGGAGCTACTTCATATGGACCTCTTGAG
TAACGCCGTTTGTAAGTCTCCATGATGTTATCCAAGGTTCAATGGTATAG
ATTCTGACTCCGTTGAACCCGACTTTGTGCTGTCGTTACCAAGATGTGGC
GGCTTTCCCCCCTCTGTTCCCTCCCATTAGATTCATAGCGACTACGACAG
CAAGACGGACGGGTGGTGCGAAAAGTGTGAATCAGTATTTCGAAGCACCA
TGAAAAACAAGCAATGCCGCCGTTCGAAGGAGGTAGGTACAGTATGACCG
ACTCTGCAAGGGAATAATATTCAAAGTATCTGGTTTTGCCTTTCTCGATG
TATCACATGCTCCGCTCTTCCTGCTGAAGCACCTGTGTACCTTAGCCGGG
CGGTGTTATTACTGTTGGGCGTGGTAAGATGTACATACACCGTTTCGAAT
TATGTAAGCACCGTGTAACGTTTTGTGACGGCGGGATTCAAATGACGGAC
CTGCGCTTATTGCCTCCATCGTCTCTCACTGTCATCACTCGTCCCACCGG
CACTGTGATTCGAAGTTTCGAAGGCACGCGTAGGTGACAGTGGGTTGTCG
TTTGCTCTTGCGTTCGATAGGTCTGGTTGGCAATTCAACTTTCTCGCTTG
CGCAGAGGGTACGTTGTAGGTGCTTGGGAAGTGCTGCTGCTCAGCGTCGA
CTATCTTTCAAGAGATGACTACGTGTTTGTTGTCTCGAGGTAAGCGGTGG
TCATTCATTGCCGCGTACATTCGCGTTTGACCGCGACTAGCCGACTTGCG
GTTGATAAATTTACAATGGTTTCAATTTGTTGTACATCTGTTGGTTCAAA
GCGTTTACTCTTGTCGGTTTGTCGCAGTTTTTCGGAGCAATTTCGAAACT
GCTGCTTGCCTCTGTCGACTTCCTCTCGTTTTGTTGGCCCTTTGCACGCC
GAAGGTTATGTCGAATCAAATGAAGGAGACCGAATATTCAAATGGATGTC
AAGAGAGCGCTACCGTCTTTTTGCGCACGATTGCGCAAATTCCCCCTCTG
TTCTATATAATGTATGGTTTGTATTAGGCTGTCTGTCTGAATGGCGGCGG
CTTCCTGTCACCGTAATCCGATCATGTCATCGTCATTGGTTTTCCCTGTT
TTCTAGACCAGATGAAGTGAAGGCCGGCGGACACAGGAATTGAGCATCTT
CGTTCGTTCGGATATCGTAGTTTCTCCGTGGGAGATGAGATAATTGTATT
TCGCTGCCCTTAGTCTGCGTATCGTAACCGCATCTCCTCCCTCTGATATG
GACCCTTTCTAAAATCATACAGTACACAACGTATTCTGGATACTGGGAAC
GTACTGGAAGTATACAGTATCAGAGTACGTGCCCAAAACCAGTTCGGACC
CTCATCGGAAATACTGCGTAATCTCAAGTACTGCAGTTATCATCCGACAA
TATTGGCTCCATCTCCAGTATGTACGTCCTGGCAAAAAGGTGGAATACTA
AGTATCACTACACTTCATACTGTAGTATAAAGTTCGAAAATACCGAATAC
ATCGGAAGTAACACCAGTACAACTCCCGACTACTCTCTGTGCACCTCTAG
TACTTCCTGGCAGAAAACTGAGATGGTTCTGTAGCGCAGTATATACACAA
AAGCGAGTCATTAAAATTTTCAACGGGCGATTGTGCGTCTTGGCTCAAAT
CATACATAAATTATGTTTGCATCGTTTTTTTATCAATAGGCCATATCCTG
TGATCTGTTTAAAACTAGTTTTGGAGAATTAGTGTAAAACTCATACATGA
ATTATCAAACATTAGTTTTGCCGTACCCAATAGATCAATATCTGTACTCA
TGTGTTGATCGTTTTTTCTAATCTGTCCAGGTTCGCTCTACACAACTTCA
AGTTCGTGTCTGAGAAGCGTGGGCGGGAGATTTACGAATGCCTCGTGCAA
GCTTACCCGGAACGGTTGGAGTTATGGAAGGGATTCATCGCGGCGGAGAC
AGAGACAGGACACATTCAAAGAGTCAGGAATCTATTCGAAAGGCTCGTGA
GTGTGTAGACCATAGATTGATGGTGACGTACATTAAGAAACCTCTTCGGA
ATACTTTTCACTCTATATTCAATTTGCTTTTCGGGATGACGATGATGATG
CTTGTCAGTTGACGGGGAAAGTATAGTCTGAAGGTGCTTCATCAAAACGT
ATTCACGGCGTAGCCGTGGCCTTACTTGTGATATTACTCTTGCATTCATG
GGCAATTTCACAATGCGCGGTAGGGATTTTTCTTCCTCGCGGGGTTAATA
TTGATCTTGCCCCCCCCGCACTGAGGACAAAAATGTATACGTGTGTTTCC
CGTAACCCTCACCTTTCCTGTTTCAAGACTCCGCGCATACTGGAATTGAA
CTGCGAGGCAGGTTCCATTTTTTGTCACATGAAAATATGTTTCGCGTCTG
TTACGCCGTCCCTCCACCCGTCCCTTCGCCCAACGACGTGAGTTTTCGGG
CGAGTTGTAGCGATAAGCCCCGCTTGTGGTCATTATTTAACGATGACGAT
GAGGATCTGATTATTATATCACGGTCTACGCAGGTTTTAGATACAAGCGG
CATGACCTCAGCATAAAGAGTGCATATACTACCATGTAGCTAATTCATTA
TATTTCACTCGCAAGTAGGAATTGCCCAGGGTGAACCCTCACTCCCCTCG
TCCCCACCTAATACGACCCTCCAGACCCAAGATTTGGACGTAGAGGCACT
CCATTCCCACGTTGTCCCAGCCGCCGGCATAAAAACGATATTTACGTCGT
GTGGCACGCAATGATTCTTTCTTACTCATGTCTTTAGTTTTGATCGACAC
CCCCTATGTTTGTTTTTGCCCATGATTTTTGTTTCGTTGTTTGCGTGCGA
TATCGTGTCGTGTCACCATGGACAACGACATAGACAAAAGAGCTCGACTT
GATGATGACGGAGCAAGCACGAGAGGTATTCAACATGTACGTATCGTTCG
AGAAGGATCATGGGGACAATGTAACCCGGATCGAGGCTGTCAAAGCCAGG
GCCAGAAAGTCCTTGACGATGACCAAGAAGAGGTTGTTGCCGAGCGACTG
ATGACACAGTTTAGAGCTCAGGAGTACTGTCCTTTTATTCGGTTTATCTT
AATTTAGGCGTATCGCATCTTCGTTTGGTATGTACTTCCTTGACTGATTT
TTAAAGCTACGAGGTCCTGGTGTAGCTATTGTGCCTTTATGCAGCGCACG
CGGATCGTCTACGTTTTTTCAGCCAGTTCGTGTAACCTCGCTGCTAGGCG
AACATCGATTCAGGAGTTGTGTGTTCGTGTCATTTAGCCACCTGTTGCTG
CTGTTAGTCCCTCGTATTTGTGCTACTTTCGTCGCATGTTCCATTTTATT
TCCTGGTGTGTGCGTCGACGTAGCGTCCGCTCTTAGAGTTGAATGTTGTG
TGATGCAGAAGGTGGATGGGGCTGTCCGTGTGTTGACCTCGCCTACCCGA
TACGTGGTGGCTGCCTTGTCGAATGCAGCTGAACATGCGCCGAGTCGTTT
CAAACGATCTTGCCTGTGGCTGAGTCGACTGGTCACAAACGGTTTTACTA
TTTCTTGATGTGAATCTATCAGACCCGCTGTCAGTAGCCGCAGGAATTCA
TCATGTCTTCAGCAATAGAGTTATGCGTTGCAGGTCCCACTTTGATGGAT
AAGTAGTGATGCTTCGAAGTTTTCGATCGTTCCTTTCACCCATTGAGTTA
TCGTCAGTGTATCAGTATTTTTTTTCAACAACGTATCAATCTGATTGTCC
ACACTCGCGGTGAGAATTGATTGGTTGTCGTTTTTTCCGGTCATTATTCG
GCGCATAAACTCGTCTCTCACTGGCTGTCGTCGCGACTTTTAAACTGTAT
TTGTGGTACACTTGCAGTACGGTAACGGGTTATAACGGTAAAGTAATTGG
TCCAGTAACGGTTCGGTCACTCTAGTCACGTTTTGCTGCAACGTAATAGT
TGACGGGAAATCGAGTTTTTCGGGGCAAGTAACCGCACGGAATAGTCGAT
ATTTTTATCTCAGTATTTAGACAAGGAACAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1389:11599..17929- >mRNA_H-paniculata_contig1389.2384.1 ID=mRNA_H-paniculata_contig1389.2384.1|Name=mRNA_H-paniculata_contig1389.2384.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3594bp|location=Sequence derived from alignment at H-paniculata_contig1389:11599..17929- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGATGATGGTGAACATGCTATAGACAGAAGGCGGAAGTGCGCTCA
CGAAGGCTGCTCCACAAAGCCATGCTTCGGAGTGATGGGTAGCACGACGG
CAAAGTTCTGTGCCCGACACTCTGAGACGGGTATGGTTGACGTCATGAAC
CGAACCTGTGTGGTAGAAGGTTGTTTCAAGCAGCCGCACTATGGTGTTCC
TGGCAGTAAGACGGGAAAATTTTGCGCCCTACATTCTGCAGACGGCACAG
CAGATGTGACGACCAAGCCATGCGCTCACGATGGGTGCTCCACACAGCCT
TTTTTCGGCGTGTGGGGTACCAAACGTGCGGAGTACTGCGTACGCCACAA
GAAGAGGGACATGGTAAACATTTGGGCCAAGATGTGTTCGCAAGGGGGTT
GTACCAAGACAGCGTCGTTCGGCGTAGAGGGCACCACGATCAGAGAATTC
TGCGCCACCCACAAGAAGCTTCTCATGGTGAACCTCTTGAGGAGAATGTG
CTCTCACCCCACCTGCCACTCGACGGCGGCCTTCTCCACGCCAGGGAGAA
GCGCGGCGGACTTCTGCGAAATCCACGCAGCAGCTGGCATGGTGGACGTG
CGGAGGTCGCGGTGCGCTTACCCTGACTGCAGGAAGCTAGGGAAGCGAGG
TCAAGACGGCAAGAGCAAGGCGTTTTGCCCGTTCCACACGAACAGCAGGG
CCGGGGCTGTATCGGCATCAGCAGCGGTACTCGAGGCGGCAGCTGCGGCA
GCTACGGTGGAAGCGGCCAGGAAGAATCCCGACGACAGAAGCAATCACGG
AAAACCCAGCGCCACCGCGGTCGCCTCCGCCCCCATCGCAAGTTCTCGCG
TTACCCGATTGAGTGCCACGGACAGCGCCATCACTAGTTCTCGCGTTACC
CGATTGAGTGCCACGGGCAGCGCCATCACTAGTTCTCGCGTTACCCGATT
GAGTGCCACGGGCAGCGGTGACGGTATTGCTAAGCGTGTCTGCTGCGTTG
CACCACGGCAACGGCCACCACCACAACCGCTGGCTGTCACGGGGATTGGT
TCATCGTCTCAGATGTTTGATGATGGTGAACATGCTATAGACAGAAGGCG
GAAGTGCGCTCACGAAGGCTGCTCCACAAAGCCATGCTTCGGAGTGATGG
GTAGCACGACGGCAAAGTTCTGTGCCCGACACTCTGAGACGGGTATGGTT
GACGTCATGAACCGAACCTGTGTGGTAGAAGGTTGTTTCAAGCAGCCGCA
CTATGGTGTTCCTGGCAGTAAGACGGGAAAATTTTGCGCCCTACATTCTG
CAGACGGCACAGCAGATGTGACGACCAAGCCATGCGCTCACGATGGGTGC
TCCACACAGCCTTTTTTCGGCGTGTGGGGTACCAAACGTGCGGAGTACTG
CGTACGCCACAAGAAGAGGGACATGGTAAACATTTGGGCCAAGATGTGTT
CGCAAGGGGGTTGTACCAAGACAGCGTCGTTCGGCGTAGAGGGCACCACG
ATCAGAGAATTCTGCGCCACCCACAAGAAGCTTCTCATGGTGAACCTCTT
GAGGAGAATGTGCTCTCACCCCACCTGCCACTCGACGGCGGCCTTCTCCA
CGCCAGGGAGAAGCGCGGCGGACTTCTGCGAAATCCACGCAGCAGCTGGC
ATGGTGGACGTGCGGAGGTCGCGGTGCGCTTACCCTGACTGCAGGAAGCT
AGGGAAGCGAGGTCAAGACGGCAAGAGCAAGGCGTTTTGCCCGTTCCACA
CGAACAGCAGGGCCGGGGCTGTATCGGCATCAGCAGCGGTACTCGAGGCG
GCAGCTGCGGCAGCTACGGTGGAAGCGGCCAGGAAGAATCCCGACGACAG
AAGCAATCACGGAAAACCCAGCGCCACCGCGGTCGCCTCCGCCCCCATCG
CAAGTTCTCGCGTTACCCGATTGAGTGCCACGGACAGCGCCATCACTAGT
TCTCGCGTTACCCGATTGAGTGCCACGGGCAGCGCCATCACTAGTTCTCG
CGTTACCCGATTGAGTGCCACGGGCAGCGGTGACGGTATTGCTAAGCGTG
TCTGCTGCGTTGCACCACGGCAACGGCCACCACCACAACCGCTGGCTGTC
ACGGGGATTGGTTCATCGTCTCAGGCGGCGCGATCTGTTGGCGAGAGGGG
CCTGACGACTGTATCTGCCCCGGAAGGTGGAAAACTGTGGGCATCGTTGC
TCAGCGCGGAGCACGAGCTCGGCACCGCCGCGTCTTTCAAGGAGGTTTCC
CGGCGTGCTTGCGAAGACTCGGACACATCCAGTGTTTTTCGTTGCGTTGG
AGAGGCGGCGCGATCTGTTGGCGAGAGGGGCCTGACGACTGTATCTGCCC
CGGAAGGTGGAAAACTGTGGGCATCGTTGCTCAGCGCGGAGCACGAGCTC
GGCACCGCCGCGTCTTTCAAGGAGGTTTCCCGGCGTGCTTGCGAAGACTC
GGACACATCCAGTGTTTTTCGTTGCGTTGGAGAGATTCATAGCGACTACG
ACAGCAAGACGGACGGGTGGTGCGAAAAGTGTGAATCAGTATTTCGAAGC
ACCATGAAAAACAAGCAATGCCGCCGTTCGAAGGAGATTCATAGCGACTA
CGACAGCAAGACGGACGGGTGGTGCGAAAAGTGTGAATCAGTATTTCGAA
GCACCATGAAAAACAAGCAATGCCGCCGTTCGAAGGAGGTCTGGTTGGCA
ATTCAACTTTCTCGCTTGCGCAGAGGGTACGTTGTAGGTGCTTGGGAAGT
GCTGCTGCTCAGCGTCGACTATCTTTCAAGAGATGACTACGTGTTTGTTG
TCTCGAGGTCTGGTTGGCAATTCAACTTTCTCGCTTGCGCAGAGGGTACG
TTGTAGGTGCTTGGGAAGTGCTGCTGCTCAGCGTCGACTATCTTTCAAGA
GATGACTACGTGTTTGTTGTCTCGAGGTTCGCTCTACACAACTTCAAGTT
CGTGTCTGAGAAGCGTGGGCGGGAGATTTACGAATGCCTCGTGCAAGCTT
ACCCGGAACGGTTGGAGTTATGGAAGGGATTCATCGCGGCGGAGACAGAG
ACAGGACACATTCAAAGAGTCAGGAATCTATTCGAAAGGCTCGTTCGCTC
TACACAACTTCAAGTTCGTGTCTGAGAAGCGTGGGCGGGAGATTTACGAA
TGCCTCGTGCAAGCTTACCCGGAACGGTTGGAGTTATGGAAGGGATTCAT
CGCGGCGGAGACAGAGACAGGACACATTCAAAGAGTCAGGAATCTATTCG
AAAGGCTCACAAAAGAGCTCGACTTGATGATGACGGAGCAAGCACGAGAG
GTATTCAACATGTACGTATCGTTCGAGAAGGATCATGGGGACAATGTAAC
CCGGATCGAGGCTGTCAAAGCCAGGGCCAGAAAGTCCTTGACGATGACCA
AGAAGAGGTTGTTGCCGAGCGACTGAACAAAAGAGCTCGACTTGATGATG
ACGGAGCAAGCACGAGAGGTATTCAACATGTACGTATCGTTCGAGAAGGA
TCATGGGGACAATGTAACCCGGATCGAGGCTGTCAAAGCCAGGGCCAGAA
AGTCCTTGACGATGACCAAGAAGAGGTTGTTGCCGAGCGACTGA back to top
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