mRNA_H-paniculata_contig1389.2382.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1389.2382.1
Unique NamemRNA_H-paniculata_contig1389.2382.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1389.2382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1389contigH-paniculata_contig1389:9631..10002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.2048178-CDS-H-paniculata_contig1389:9630..100021622929103.2048178-CDS-H-paniculata_contig1389:9630..10002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1389 9631..10002 +
1691480732.606479-CDS-H-paniculata_contig1389:9630..100021691480732.606479-CDS-H-paniculata_contig1389:9630..10002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1389 9631..10002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1389.2382.1prot_H-paniculata_contig1389.2382.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1389 9631..10002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1389.2382.1

>prot_H-paniculata_contig1389.2382.1 ID=prot_H-paniculata_contig1389.2382.1|Name=mRNA_H-paniculata_contig1389.2382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
LIAWKTICHKNTKCREGNNQRHIVLPSSEHLANNKGSKCQRGSKLEILEI
DTWARHETQEPSEAQHKHTIHHIGFRNHGCLCVNYTTNLIIRHDVCPTLG
YRSSILAAPTIRPIHNEGLPHCT*
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mRNA from alignment at H-paniculata_contig1389:9631..10002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1389.2382.1 ID=mRNA_H-paniculata_contig1389.2382.1|Name=mRNA_H-paniculata_contig1389.2382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig1389:9631..10002+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGATTGCCTGGAAGACCATCTGCCACAAGAACACGAAGTGTCGCGAGGG
GAACAATCAACGACATATAGTGTTGCCTTCAAGCGAGCATCTAGCAAACA
ATAAGGGTAGTAAATGTCAGCGCGGTTCAAAGTTGGAGATCCTGGAGATT
GATACATGGGCCCGTCATGAGACTCAAGAGCCAAGCGAAGCGCAACATAA
GCACACCATACATCATATTGGATTCAGGAATCACGGCTGTTTGTGTGTAA
ACTATACGACTAATCTCATCATAAGGCATGATGTGTGCCCGACGCTCGGA
TACAGATCCTCTATTCTGGCGGCACCAACAATACGTCCAATACACAATGA
AGGCTTACCTCACTGTACGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1389:9631..10002+

>mRNA_H-paniculata_contig1389.2382.1 ID=mRNA_H-paniculata_contig1389.2382.1|Name=mRNA_H-paniculata_contig1389.2382.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig1389:9631..10002+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGATTGCCTGGAAGACCATCTGCCACAAGAACACGAAGTGTCGCGAGGG
GAACAATCAACGACATATAGTGTTGCCTTCAAGCGAGCATCTAGCAAACA
ATAAGGGTAGTAAATGTCAGCGCGGTTCAAAGTTGGAGATCCTGGAGATT
GATACATGGGCCCGTCATGAGACTCAAGAGCCAAGCGAAGCGCAACATAA
GCACACCATACATCATATTGGATTCAGGAATCACGGCTGTTTGTGTGTAA
ACTATACGACTAATCTCATCATAAGGCATGATGTGTGCCCGACGCTCGGA
TACAGATCCTCTATTCTGGCGGCACCAACAATACGTCCAATACACAATGA
AGGCTTACCTCACTGTACGTAGTTGATTGCCTGGAAGACCATCTGCCACA
AGAACACGAAGTGTCGCGAGGGGAACAATCAACGACATATAGTGTTGCCT
TCAAGCGAGCATCTAGCAAACAATAAGGGTAGTAAATGTCAGCGCGGTTC
AAAGTTGGAGATCCTGGAGATTGATACATGGGCCCGTCATGAGACTCAAG
AGCCAAGCGAAGCGCAACATAAGCACACCATACATCATATTGGATTCAGG
AATCACGGCTGTTTGTGTGTAAACTATACGACTAATCTCATCATAAGGCA
TGATGTGTGCCCGACGCTCGGATACAGATCCTCTATTCTGGCGGCACCAA
CAATACGTCCAATACACAATGAAGGCTTACCTCACTGTACGTAG
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