mRNA_H-paniculata_contig13867.2370.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13867.2370.1
Unique NamemRNA_H-paniculata_contig13867.2370.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13867.2370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13867contigH-paniculata_contig13867:2074..2648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size575
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13867.2370.1prot_H-paniculata_contig13867.2370.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13867 2161..2640 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.0827806-UTR-H-paniculata_contig13867:2073..21601622929102.0827806-UTR-H-paniculata_contig13867:2073..2160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 2074..2160 +
1691480732.1232464-UTR-H-paniculata_contig13867:2073..21601691480732.1232464-UTR-H-paniculata_contig13867:2073..2160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 2074..2160 +
1622929102.1132467-UTR-H-paniculata_contig13867:2640..26481622929102.1132467-UTR-H-paniculata_contig13867:2640..2648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 2641..2648 +
1691480732.1390967-UTR-H-paniculata_contig13867:2640..26481691480732.1390967-UTR-H-paniculata_contig13867:2640..2648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13867 2641..2648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.0984106-CDS-H-paniculata_contig13867:2160..26401622929102.0984106-CDS-H-paniculata_contig13867:2160..2640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13867 2161..2640 +
1691480732.131447-CDS-H-paniculata_contig13867:2160..26401691480732.131447-CDS-H-paniculata_contig13867:2160..2640Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13867 2161..2640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13867.2370.1

>prot_H-paniculata_contig13867.2370.1 ID=prot_H-paniculata_contig13867.2370.1|Name=mRNA_H-paniculata_contig13867.2370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MPHVGLNYPPQNVQSTHHTPLDEDNLYDTIRYDTIRTTNPIRYNKSDTIQ
QHNTSCYDTIAMENHHRDGTNKSIAAAAARYNNDKKIHRVHIFHSCLHTV
IECVTIRPKLTSKRRRHQQTLQDTRLRMSRNSADLASSKKTPNRSSFRLG
TAREHRQEY*
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mRNA from alignment at H-paniculata_contig13867:2074..2648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13867.2370.1 ID=mRNA_H-paniculata_contig13867.2370.1|Name=mRNA_H-paniculata_contig13867.2370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig13867:2074..2648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCGTTTCGTGACACACGTAGTTGTATGCACTCAAGCTCTATTTCTCTC
AATACGCACCGCAAAAACATTGCTGTTTGCTAAGCGCATGCCGCACGTAG
GTCTAAACTACCCACCACAAAATGTACAAAGTACGCATCACACACCACTC
GACGAAGACAATTTATACGATACGATACGATACGATACGATACGAACAAC
AAATCCCATACGATACAATAAATCCGATACGATACAACAACACAACACAT
CCTGCTACGATACGATCGCGATGGAAAATCATCACCGGGACGGTACAAAC
AAGTCTATTGCTGCTGCTGCTGCTCGTTACAACAATGACAAGAAAATACA
CCGAGTACATATATTTCACTCATGTTTACACACCGTGATTGAATGTGTTA
CGATACGGCCAAAACTCACATCGAAACGTCGACGACACCAACAAACACTT
CAAGACACAAGGTTACGCATGAGCAGGAACTCGGCCGATCTGGCATCTAG
TAAAAAGACGCCGAACAGGAGCTCATTCAGATTGGGAACCGCTCGCGAAC
ACAGACAAGAATATTGACAATCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13867:2074..2648+

>mRNA_H-paniculata_contig13867.2370.1 ID=mRNA_H-paniculata_contig13867.2370.1|Name=mRNA_H-paniculata_contig13867.2370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig13867:2074..2648+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCACGTAGGTCTAAACTACCCACCACAAAATGTACAAAGTACGCA
TCACACACCACTCGACGAAGACAATTTATACGATACGATACGATACGATA
CGATACGAACAACAAATCCCATACGATACAATAAATCCGATACGATACAA
CAACACAACACATCCTGCTACGATACGATCGCGATGGAAAATCATCACCG
GGACGGTACAAACAAGTCTATTGCTGCTGCTGCTGCTCGTTACAACAATG
ACAAGAAAATACACCGAGTACATATATTTCACTCATGTTTACACACCGTG
ATTGAATGTGTTACGATACGGCCAAAACTCACATCGAAACGTCGACGACA
CCAACAAACACTTCAAGACACAAGGTTACGCATGAGCAGGAACTCGGCCG
ATCTGGCATCTAGTAAAAAGACGCCGAACAGGAGCTCATTCAGATTGGGA
ACCGCTCGCGAACACAGACAAGAATATTGAATGCCGCACGTAGGTCTAAA
CTACCCACCACAAAATGTACAAAGTACGCATCACACACCACTCGACGAAG
ACAATTTATACGATACGATACGATACGATACGATACGAACAACAAATCCC
ATACGATACAATAAATCCGATACGATACAACAACACAACACATCCTGCTA
CGATACGATCGCGATGGAAAATCATCACCGGGACGGTACAAACAAGTCTA
TTGCTGCTGCTGCTGCTCGTTACAACAATGACAAGAAAATACACCGAGTA
CATATATTTCACTCATGTTTACACACCGTGATTGAATGTGTTACGATACG
GCCAAAACTCACATCGAAACGTCGACGACACCAACAAACACTTCAAGACA
CAAGGTTACGCATGAGCAGGAACTCGGCCGATCTGGCATCTAGTAAAAAG
ACGCCGAACAGGAGCTCATTCAGATTGGGAACCGCTCGCGAACACAGACA
AGAATATTGA
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