mRNA_H-paniculata_contig13789.2329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13789.2329.1
Unique NamemRNA_H-paniculata_contig13789.2329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13789.2329.1 vs. uniprot
Match: A0A6H5KJL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.720e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:   21 LENYMTLVEESNGFGLTIQLMNEHEDMEIYDKGLDIVNSFVD 146
            L  Y TLVEE+ GF   I L N+H+DMEIYDK +DI+ +F D
Sbjct:  196 LSEYTTLVEEAQGFDKIISLANDHDDMEIYDKAMDIIQAFHD 237
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BLAST of mRNA_H-paniculata_contig13789.2329.1 vs. uniprot
Match: D7G3N3_ECTSI (Importin alpha-7 subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N3_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.850e-5
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 3 
Query:   21 LENYMTLVEESNGFGLTIQLMNEHEDMEIYDKGLDIVNSFVDESE 155
            L  Y TLVEE+ GF   + L N+H+DMEIYDK +DI+ +F D  E
Sbjct:   81 LSEYTTLVEEAQGFDKIMGLANDHDDMEIYDKAMDIIQAFHDSQE 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13789.2329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJL7_9PHAE1.720e-557.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3N3_ECTSI2.850e-553.33Importin alpha-7 subunit, putative n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13789contigH-paniculata_contig13789:2474..3230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13789.2329.1prot_H-paniculata_contig13789.2329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13789 2506..3230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.9622755-UTR-H-paniculata_contig13789:2473..25051622929095.9622755-UTR-H-paniculata_contig13789:2473..2505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13789 2474..2505 +
1691480729.594946-UTR-H-paniculata_contig13789:2473..25051691480729.594946-UTR-H-paniculata_contig13789:2473..2505Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13789 2474..2505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929095.9774568-CDS-H-paniculata_contig13789:2505..25891622929095.9774568-CDS-H-paniculata_contig13789:2505..2589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13789 2506..2589 +
1691480729.6045942-CDS-H-paniculata_contig13789:2505..25891691480729.6045942-CDS-H-paniculata_contig13789:2505..2589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13789 2506..2589 +
1622929095.991579-CDS-H-paniculata_contig13789:3029..32301622929095.991579-CDS-H-paniculata_contig13789:3029..3230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13789 3030..3230 +
1691480729.6127727-CDS-H-paniculata_contig13789:3029..32301691480729.6127727-CDS-H-paniculata_contig13789:3029..3230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13789 3030..3230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13789.2329.1

>prot_H-paniculata_contig13789.2329.1 ID=prot_H-paniculata_contig13789.2329.1|Name=mRNA_H-paniculata_contig13789.2329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MTLVEESNGFGLTIQLMNEHEDMEIYDKGLDIVNSFVDESELDGASLDSG
DKDDSEDEDEDEDRDNDVDQDINTITNAYRKEGGRSRSNSEISDD
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mRNA from alignment at H-paniculata_contig13789:2474..3230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13789.2329.1 ID=mRNA_H-paniculata_contig13789.2329.1|Name=mRNA_H-paniculata_contig13789.2329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=757bp|location=Sequence derived from alignment at H-paniculata_contig13789:2474..3230+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTGACGGCGAGGCTCAGCTGGAGAATTATATGACCTTGGTCGAGGAG
AGTAACGGTTTCGGATTGACGATACAGCTCATGAACGAGCACGAAGACAT
GGAGATCTACGACAAGGTGCCGTACTAAACACCGAAGTGGCAGCTGACTC
AATATCGACGAAGATATTTTCAAGATCTGTGTGTAATTAGAGGAATTTAC
GAGCGACCAAGGCCTGATAATGGAATATGACTGTATCCAGGAATAAGTAA
TGCTCGCTGGCAGTTATGTTGTGTGGTGAAGGAGTGACACACTGGCGACC
GAGATTTTTTTCGAATTAGCTGTGCTTACAGTACAGGATATCGTTCTTTT
CTGCAGGTCACTGTAGGTAATGTTTTTGAGAGATTTTTGTGGACACGATA
AAAACGCAATGAAACAAACAAAAAATCTATTAAAACTCGACTATTTGCCG
GTCTTGGCGTGTATTCTTGCTTTCCCCTTCTTTCCGCTGTTCGTTTTTTC
CGCTCGCTTGCTGACTGTGTGTCTGTTCGATTGGAAAAACACACGCACGT
GCACAGGGGCTCGACATCGTGAATTCATTCGTAGACGAAAGCGAGCTGGA
CGGTGCTAGTCTCGATTCAGGAGATAAAGACGACAGCGAGGACGAAGATG
AAGACGAGGACCGTGACAACGATGTTGACCAAGATATCAATACTATCACA
AACGCTTATAGAAAGGAAGGTGGGCGATCGCGAAGCAACTCCGAGATTTC
GGACGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig13789:2474..3230+

>mRNA_H-paniculata_contig13789.2329.1 ID=mRNA_H-paniculata_contig13789.2329.1|Name=mRNA_H-paniculata_contig13789.2329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig13789:2474..3230+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTTGGTCGAGGAGAGTAACGGTTTCGGATTGACGATACAGCTCAT
GAACGAGCACGAAGACATGGAGATCTACGACAAGATGACCTTGGTCGAGG
AGAGTAACGGTTTCGGATTGACGATACAGCTCATGAACGAGCACGAAGAC
ATGGAGATCTACGACAAGGGGCTCGACATCGTGAATTCATTCGTAGACGA
AAGCGAGCTGGACGGTGCTAGTCTCGATTCAGGAGATAAAGACGACAGCG
AGGACGAAGATGAAGACGAGGACCGTGACAACGATGTTGACCAAGATATC
AATACTATCACAAACGCTTATAGAAAGGAAGGTGGGCGATCGCGAAGCAA
CTCCGAGATTTCGGACGATGGGCTCGACATCGTGAATTCATTCGTAGACG
AAAGCGAGCTGGACGGTGCTAGTCTCGATTCAGGAGATAAAGACGACAGC
GAGGACGAAGATGAAGACGAGGACCGTGACAACGATGTTGACCAAGATAT
CAATACTATCACAAACGCTTATAGAAAGGAAGGTGGGCGATCGCGAAGCA
ACTCCGAGATTTCGGACGAT
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