mRNA_H-paniculata_contig13685.2270.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13685.2270.1
Unique NamemRNA_H-paniculata_contig13685.2270.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13685.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13685contigH-paniculata_contig13685:224..5479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size792
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13685.2270.1prot_H-paniculata_contig13685.2270.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13685 362..4779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.5449648-UTR-H-paniculata_contig13685:223..3611622929086.5449648-UTR-H-paniculata_contig13685:223..361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13685 224..361 +
1691480726.0137236-UTR-H-paniculata_contig13685:223..3611691480726.0137236-UTR-H-paniculata_contig13685:223..361Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13685 224..361 +
1622929086.6545973-UTR-H-paniculata_contig13685:4779..47841622929086.6545973-UTR-H-paniculata_contig13685:4779..4784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13685 4780..4784 +
1691480726.0548797-UTR-H-paniculata_contig13685:4779..47841691480726.0548797-UTR-H-paniculata_contig13685:4779..4784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13685 4780..4784 +
1622929086.680642-UTR-H-paniculata_contig13685:5265..54791622929086.680642-UTR-H-paniculata_contig13685:5265..5479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13685 5266..5479 +
1691480726.0647728-UTR-H-paniculata_contig13685:5265..54791691480726.0647728-UTR-H-paniculata_contig13685:5265..5479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13685 5266..5479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.5838244-CDS-H-paniculata_contig13685:361..4281622929086.5838244-CDS-H-paniculata_contig13685:361..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13685 362..428 +
1691480726.0244706-CDS-H-paniculata_contig13685:361..4281691480726.0244706-CDS-H-paniculata_contig13685:361..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13685 362..428 +
1622929086.6019907-CDS-H-paniculata_contig13685:3591..36351622929086.6019907-CDS-H-paniculata_contig13685:3591..3635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13685 3592..3635 +
1691480726.0333707-CDS-H-paniculata_contig13685:3591..36351691480726.0333707-CDS-H-paniculata_contig13685:3591..3635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13685 3592..3635 +
1622929086.6228878-CDS-H-paniculata_contig13685:4455..47791622929086.6228878-CDS-H-paniculata_contig13685:4455..4779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13685 4456..4779 +
1691480726.0425782-CDS-H-paniculata_contig13685:4455..47791691480726.0425782-CDS-H-paniculata_contig13685:4455..4779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13685 4456..4779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13685.2270.1

>prot_H-paniculata_contig13685.2270.1 ID=prot_H-paniculata_contig13685.2270.1|Name=mRNA_H-paniculata_contig13685.2270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MQIKAVASVPIAFFCGITSAAAGSKDSGLRRHLADGPFCNSIGCPNGFVP
IKDAQNTLCDKDPCTVDQCCQAFCSSFPCPNGLTPIPGAQEVRCTNDFCT
QKQCCQALCSGFGCPNGFVPIKNADKVECTNQICTADQCCEKNY*
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mRNA from alignment at H-paniculata_contig13685:224..5479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13685.2270.1 ID=mRNA_H-paniculata_contig13685.2270.1|Name=mRNA_H-paniculata_contig13685.2270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5256bp|location=Sequence derived from alignment at H-paniculata_contig13685:224..5479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCTCCCACCCTTGTCACAACTCGATCACTCCTGAGATATTTCCTACTG
CGCAACACTGCTCTCCACTTCGTGCCTCATTTCTACGATCTACATCATCA
CCCTTATTCACGAAGCAACACACATACGACCAGCCAAGATGCAAATCAAA
GCAGTAGCTTCCGTCCCGATTGCCTTCTTCTGCGGTATCACCAGCGCTGC
AGCGGGTGAGTTAGTGTATTTGTGGGTTTCGTGAGAGTTCGTGAGAGACT
GGTCCCTGCTGTACACATCGTCGACGTACACAAGTACGGCATAAGGAATC
ATTTCATGTAGATGTAGCGTGTGTGCGTGATTTGCTGAGGCACTAGGAAG
CGTGTTCAACCAACGCAGAAAAAAACATGAGCTATTACATCGCATCACGA
CGTGGTGAACAGGCCTCATCGAGAGTGTGATGGGAGATAGAGTGAGCACA
GTCATCCATTCCCGGTATGCAGCGGGTATATTGCTGTGTTGACGCAGCCA
TGTACAAGGCAAGATGGCTCGATGGAGTGAGATTTGTTTCTCCGGAATTC
GGATTTCCGGCTGCTCTTATCGCCTCCTTAGGACAGTGTGCGTCACATGA
AGGTTTACTTCCTTCTCTACCGCTTTCTTACGTTTGGATTGGTCATTCAT
TGATCAGACGCATTTAACGCCGCCACATGAACTTTGCCACAGACTCACTC
ACACATGGAGTGGATGACACTATCGGTCCAGTACGTACTTCACTTTCTGC
AGCAGAATCATTTGCCACCTCTTCGGAAAAGAATTCCTCACCTGAAAGCA
CCGTTTTTTTATCTCTTTTCTCCGCTATCTTAGGGCCATTCCTAGCGTGC
ACTGTCTGTACCACGTCTGTACCGTTTGATCCTTCCGCTTTAAGAAATTA
TGCTACAGACGGTGCAAAGCACGCGCTCAACACGATGACAACGGTTGTGG
ACCTCGGGATTGTTAGTGTAGCACTCCTGTGATGACCACAAGGCATGCCA
CGGCTCTCGCAATCGTTGGTGGCGTGCGCTGGGCACTGTGCGTTCGATAT
ACCGGTGTCCGTCCTTGCATGTCAAAACTAAGCTGCACACGCTAGACTAG
ACGGCAACGTTGGCTTACATGTACTTTCACATTTTGACATTTTCCCGCTA
GAAATGATGCTTAGATATGTTGAGGTTTGGGTGTTTTTGGCTAGAGCCTA
CATGGTTCTGGTCCACAGCAGGCGCAGGAAATGAAATGTTGCACCCCCCG
GACAAATACGAGTTTTTGGCGTAGTCGCGACGAAAGTGAAAAAATGTTCG
TCTGAGATTCAGAATGAGCTGGTGTACTTACTCTATGTGCCCCACACCAT
CCAGGACTGCTTATATATACTCGTAAATCGAGTGAACAGGGCCGGGTACT
TGACTGTTATGTGTCCGCTCGCTCTAAAACTTCGGCGAATTCTTCTTCAT
TTTCGTGGCGGATACGCCAATTATTCGTACTTATCCGGGGGGGTGAAATG
TTTGCGTGGCATGTTAACCTAATCAACTCTTGGCAGTTGTTTTGATGGAT
ATGAGATAATAAGTCGTCACGCATTTCCCCCCGTCACCTGGAGATGATGA
CACAAGTTTTCATTGGACATGACTCCATTAACAAAGGTCGAATAAAAATC
GCTGATTTGAATTGAGATCTTAACCGTTAGGATGTACACTAGGTTAACCC
GGGTCAGGTATACGAATATTGTAAGAAAGTGTTTGGTGTAAGATATGAAG
AGTCAATCGATGACTACATAAACAAATGATGTATCTGCAAAAAGCTGTCT
CTGCATCTTCTCTCAACTGCGTGCTCGTCAGTGTAGTACACCTGGTATCT
GGTTAGTCCTATCCGAACAACTACCATAGTATTAATTGGAGCCAAATCAT
CCGACAAATCTAGTCAGAGATGGTCCTGAGAATAATGCTGAACAGTTTTG
TCAGAAATCTGTGGCGGTGGGGTTGAGTATTGGTAGCTAACGGTGATAGC
GCGCGTGCATGTTCAAGCAAATTAGGTTTCTCGGAAACGACAGAGCCTGT
AAGGTCGACAGAGCCAATCTATTTATAGATGTTCGCCATACTGTTGTTCG
CTGACACGGCCTCCCCCTTCGACCGTTGAGGAAGATCCAAGTGTCTCAGG
TGTGCCCGAGAAGGATATATGTTCGTTTATCTTTTATTCACTCATCTTGC
GCCAGACCACGCTGCTGTGTCACCCTTACTACAGTTGCTCAAGCTTTGTG
CTTGGTCTGAAAAGGAAGCAAGATGGTGGAGCTTTCCCTCCTCTACCGGC
AGACGTTCAGGAGAATCCTAATACACGAAGATCTAGATATCTCTCATGCC
AAATGTCGGATCTAGAAACCAAAAAAATATCGACGAAACCCAGGAACCGT
TACTTCTAGAAAGTGACAGTTCAATCGAAGACCGCACTTTTTCCCGCCGC
ATATAACAGCATATTGGTGAAATGGGAACCCAAGTTTGAGATGGGGATCC
TGGGTTATATTGGAAATAGATCCGGATTTGATTTTCAGGATACAGCCTAT
TTCCAATATAACCCAGGATCCCCATCTCAAACTTGGGTTCCCATTTCACC
AATATGCTGTTATATATGGTAATCTCGTTCTATCGCTTTTTCGTCTTCGT
TGCCGCAGCTCATTATTAGTCATAAATAATGGTGATCTGATGAAGGCATC
ATACGTATGTGGACATATAAACGTATGATCATACTTATACCGGTCGTTTC
CGCCTGTGTCTTTCTCGTGTGTCTCTTGGCTTGTAGCTGTAAGACAGTCT
GCAGACCCTGCTGTCCACTAGTTATAACAAACATCACCGATTTGTTTTTC
TTTCTTACGGTGGCCCCACCTCCTCAATCTGCCTTCTCTCCTTGCTTACG
TCACGTGCCTTGTGATCGCCACCGTGCCCGTATCGCCTCGCTTTTCGATG
TCATTACGTCTTACCTAGTCTCCCTTTCCCATCCAGCGAATGGTCTTTCG
CGACATATGAACCCTTCTAGCTGTCTACACCACCATATGATCCAGACACT
TGAGACGCCTTCCGTTCACCCACCAAGTGAAACACCCTGACTGACCGCCA
CGCAGACACGCCGTGCTACATATCGTCGTGTATATATAGCTACCCGTCAT
TTTTGCAGTATAATATATTTTCCCTTTTTCATGCATGTTTTACGATCACG
TTGCCTCGGTCAACAAATTTTACGTGCCTCAAACGTTGCATATTCTTCGT
CATGTCTTCTTACTCCAGGCATGGCCGGCCGGGTCGGGCTTTCCCTAGTA
AGTAGAGCCTCAATTGTCGCCCTGATATCGCCCCTCTATATGCTTGTGCG
CTGGTCGCCAACTTGCAGGATCGAAGGACTCAGGCCTCCGCAGGCACCTA
GCAGACGGCCCGGTAAGACATTGGAAACTTTGGGTGACTGTTGGTGTTGC
TGTGTCAAATCGGCTCTTCGATATGTTCATACAACCTGAAATCGAAGGTA
GACTTGACACTCTTAACGGTTGCCAGCTAGAGGCCAGCACCGACGACGTA
AATGAACAAGCGATCGCTGTGTTTCGGGGTAATACAATGCCGTGCACGGT
AGTGAGCGAACTAAGGCGTTTCGTTTCTGTACTTCCAAAGCTGGCTTTGT
TCGTGGTGGATGTGCCACTTGGTGATGGTAACCTACACGAAGGGATCGGA
CGGATATCTCCGTTGGTAGGTGCATGTTTATATTTATTTATACTTGTTAC
GTGCCTGTTGTACATATCCATGATACGCAAATAGTGCGAGGTTTCGGCAC
GCATGACATCTTGTGCCGTAAGATGGCAGTGTACTTTCGGACATCTTTCC
AAGTCCTGATTGCCGAAGATGTCCTAGTCTTCATTTGACGATCTGATTAT
CATTTTGACACGATCATTTACGACCGCGAAAATGATAACATTCCTTCTCT
CTTCGGGTATCTAGATCTTCTCGTGGCAACCAATAATGTGTTGACCGGAA
GCTTGGGTATCCTATGTTCTCAACATATGCAGCGAGTCGTAATGGCTCGG
TAACGCAACCACCATGTCCACGTATGGAAGGACTAGCAAATTTCACTTCG
ATAGCTCCCAGCATGTGTACAGTCAGCTTCGTTGCTGCGAATCATGTTAC
CCGAAAAACATATTCCGCCCTCCCCCCCATTCCCCGCGTGCCCTATTTTC
TCGCCCTACACGCATTTCTTCCCGTCTTCTAGTTTTGCAACTCCATCGGA
TGCCCGAACGGCTTTGTCCCCATCAAGGACGCACAGAACACTCTATGCGA
CAAGGATCCCTGCACGGTTGATCAGTGCTGCCAAGCGTTCTGCTCCTCCT
TCCCGTGCCCCAACGGCCTCACCCCAATTCCGGGTGCTCAGGAAGTCCGC
TGCACCAACGATTTCTGCACGCAGAAGCAGTGTTGCCAAGCTCTCTGCTC
GGGCTTCGGTTGCCCCAACGGCTTCGTCCCCATCAAGAACGCAGACAAGG
TCGAGTGCACCAACCAGATCTGCACCGCTGACCAGTGCTGTGAAAAGAAT
TATTAACTGACGTGAGTTAAACATGGTCGGACCGTGCTTTGTGGTGGTAC
AAGTACGAGGAAAATTAGACTGGATTGTTGTTGTTCCATTTCTGGAGCAA
GTTGGAATGCCAAATCTGGGACACACGATGTAGTACAACGCAGCGATTTC
TTCGCTATGGTAGCAGCTGGTCAGCTAACTCAACACCGGCTCTCCCACAT
TCGGAAGGAATCCATGAAAAACCCAGCTTCGGGGATTGAAACTACAGCAG
AAGCTGCTGAAGGCCACGACACCCTCCGCATAACTAATGGAGTGCGATTA
CCCGCATGGGTAGGACGACGAAACCAGGCTGGACTGGATTGAGTACACGT
TTCTGCGAGATAGCTCATAGTTCTATTATCGTTTAACACAGCTTGTATCG
CGATGTCCCAACTAAGACTAGGGGACACACCGTGCTTACCCCTTTCCTTC
ATTTGCTCGTTTTGCCGCGCTCATTTTTGTGTTTGTCTGCAGATAAATAC
TCCTGAACGGACTCATATCGGGGGTGCCAACCTCCTAGGGTTAGTCTTGC
ACGTGGCAGTCGAATTTGACCATGGGCTAGTACGTGCGATGCACTCATCA
TTTGGACCTGGTGCTGTGCTTGTCAGCGACCATCTACAGATACAGTGCAG
CGGCTGGGACAAAGACAAGCTTTGACGTATAAAAATTGCTCGTGCTTGAA
GAATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig13685:224..5479+

>mRNA_H-paniculata_contig13685.2270.1 ID=mRNA_H-paniculata_contig13685.2270.1|Name=mRNA_H-paniculata_contig13685.2270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig13685:224..5479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAATCAAAGCAGTAGCTTCCGTCCCGATTGCCTTCTTCTGCGGTAT
CACCAGCGCTGCAGCGGATGCAAATCAAAGCAGTAGCTTCCGTCCCGATT
GCCTTCTTCTGCGGTATCACCAGCGCTGCAGCGGGATCGAAGGACTCAGG
CCTCCGCAGGCACCTAGCAGACGGCCCGGATCGAAGGACTCAGGCCTCCG
CAGGCACCTAGCAGACGGCCCGTTTTGCAACTCCATCGGATGCCCGAACG
GCTTTGTCCCCATCAAGGACGCACAGAACACTCTATGCGACAAGGATCCC
TGCACGGTTGATCAGTGCTGCCAAGCGTTCTGCTCCTCCTTCCCGTGCCC
CAACGGCCTCACCCCAATTCCGGGTGCTCAGGAAGTCCGCTGCACCAACG
ATTTCTGCACGCAGAAGCAGTGTTGCCAAGCTCTCTGCTCGGGCTTCGGT
TGCCCCAACGGCTTCGTCCCCATCAAGAACGCAGACAAGGTCGAGTGCAC
CAACCAGATCTGCACCGCTGACCAGTGCTGTGAAAAGAATTATTAATTTT
GCAACTCCATCGGATGCCCGAACGGCTTTGTCCCCATCAAGGACGCACAG
AACACTCTATGCGACAAGGATCCCTGCACGGTTGATCAGTGCTGCCAAGC
GTTCTGCTCCTCCTTCCCGTGCCCCAACGGCCTCACCCCAATTCCGGGTG
CTCAGGAAGTCCGCTGCACCAACGATTTCTGCACGCAGAAGCAGTGTTGC
CAAGCTCTCTGCTCGGGCTTCGGTTGCCCCAACGGCTTCGTCCCCATCAA
GAACGCAGACAAGGTCGAGTGCACCAACCAGATCTGCACCGCTGACCAGT
GCTGTGAAAAGAATTATTAA
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