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Homology
BLAST of mRNA_H-paniculata_contig1368.2263.1 vs. uniprot
Match: D7FRU4_ECTSI (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU4_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.340e-19 Identity = 87/198 (43.94%), Postives = 105/198 (53.03%), Query Frame = 2
Query: 821 VTSGLGAPILPATFVPNFYAGGAARCAGDGNSSANSA---VSTRPALG--GFYATTVLPTASDAAMQALMTGRKRFRDEEAVSKSGEG-----VRRQSEVEGISAGGMGAVSPAVRRRAKREERLMKNREAANRSRIKRKEILSDLEDRVDVLSHNLDEARQDITSLNSEIASLREQNSFLRGRLSAVGHANNFPPAL 1384
V+SG G PILP F P F +G NSS +S PAL GF A AA QAL KR R +A + + G + +RA+REERLMKNREAANRSR+KRKE+LS+LE+R D LS +L +R + SL EIASLREQNSFLRG LSA G A + PP +
Sbjct: 213 VSSGAGTPILPLAFTPRF--------SGTSNSSXXXXXXXLSAFPALNFSGFQA---------AAGQAL----KRLRGGDAPAGAASGQPCAXXXXXXXXXXXXXXXXXXXXGRITKRARREERLMKNREAANRSRVKRKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPIM 389
BLAST of mRNA_H-paniculata_contig1368.2263.1 vs. uniprot
Match: A0A8K1C9K8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9K8_PYTOL) HSP 1 Score: 60.8 bits (146), Expect = 7.230e-6 Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 2
Query: 1112 MGAVSPAVRRRAKREERLMKNREAANRSRIKRKEILSDLEDRVDVLSHNLDEARQDITSLNSEIASLREQNSFLRGRLSAVGHANN---FPP 1378
+GAV ++ +++KRE R MKNRE+ANRSR+KRK LS++ VD L+ E + I +L +E SL +QN+FLR ++ ++ PP
Sbjct: 168 IGAVDASMCKKSKREIRQMKNRESANRSRMKRKNQLSEMAVEVDELTKTQHELQNTIAALRAENKSLHDQNAFLRSLVTMYSDSSRNVQLPP 259
BLAST of mRNA_H-paniculata_contig1368.2263.1 vs. uniprot
Match: A0A3F2RBB3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBB3_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.060e-5 Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 2
Query: 1106 GGMGAVSPAVRRRAKREERLMKNREAANRSRIKRKEILSDLEDRVDVLSHNLDEARQDITSLNSEIASLREQNSFLRGRLSAVGHANNFPPALRTQPIV 1402
GG + +++KRE R MKNRE+AN+SR++RK LS L V+ L+ N E + I SL +E SL +QN+FLR S V P + T +V
Sbjct: 249 GGAATSDDSSAKKSKREIRQMKNRESANKSRLRRKAQLSSLSTEVEELTKNQQELQTVIASLRAENKSLHDQNAFLR---SLVTGFKQEPSSSSTDQVV 344
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Basic leucine zipper domain protein |
Ec32 ortholog | Ec-25_000410.1 |
Exons | 3 |
Model size | 2486 |
Cds size | 1734 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1368.2263.1 >prot_H-paniculata_contig1368.2263.1 ID=prot_H-paniculata_contig1368.2263.1|Name=mRNA_H-paniculata_contig1368.2263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=578bp
MALPPDAFDSPSLLSDVDSWDVFADLGDADDYSINLFEDNQLDRVLDAND NSTPTLTGDEQDSSSVMSELDLQNAQPPSAGWLGQEEVIPSQANINNSRS NQTNRTLVNVAPNSCGEGGGEGSSLFASSISSDTTFDESCERTMAASSMA SVSDYSDDGSLRSIAPRGHLPSPSTYSRAVSDGASGAVCTDADVNSSYLR PALLRPRPSVQSTPTTLSNLARVSPAHARSTVTSGLGAPILPATFVPNFY AGGAARCAGDGNSSANSAVSTRPALGGFYATTVLPTASDAAMQALMTGRK RFRDEEAVSKSGEGVRRQSEVEGISAGGMGAVSPAVRRRAKREERLMKNR EAANRSRIKRKEILSDLEDRVDVLSHNLDEARQDITSLNSEIASLREQNS FLRGRLSAVGHANNFPPALRTQPIVDTRSTTRRLSSAGSSPTGRTEGGSG LVTGANACAGAACAALAVISCVALSPVGYGEHRELTAMGTAGRAAGRRVL LSIEGGKSRPLVSAEVQTLDSGLRLTYLGGTCLLGILVLLTVVAPMVYVR MVKRQGKDSRNGVGMGGLGRGWVRKLV* back to topmRNA from alignment at H-paniculata_contig1368:181..3588+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1368.2263.1 ID=mRNA_H-paniculata_contig1368.2263.1|Name=mRNA_H-paniculata_contig1368.2263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3408bp|location=Sequence derived from alignment at H-paniculata_contig1368:181..3588+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CAACGTGATTGGACGAAAATATCAACGAGTGGACCTTCAGACCGCTCCTC
AAGGAGCGCGTGAGCACATACATCAAATAAGCGACTACGATTGACGTCTA
GTGTGCGTCTACACTTTTAAAGCCAAGATGGCGCTACCTCCAGATGCATT
CGATTCACCGTCCTTGTTGAGCGATGTCGACAGTTGGGATGTATTTGCTG
ATCTTGGTGAGTTGAGAGATTTGCTTGCAAACTTACCGTAGGTGGGTCCT
CATGCTTGAAGGCCCACACGGTGCGTACCATGTCAAGACCTGTCGCATTT
GGAAGACCTAGATGATGGCATTGCTTCTTGTTGTAATATATTTCCTAGAC
TATGGTTGCGCAATTGCACAGCCATGGCCCAAACAGTAGATGGAGCTTGA
ATTTGTAAATTTGTGTGCGACATCAATCCCATCACAACGCGGCCTCTTCT
ATCTATTTCAGGTAGACTGTAGTTCCCGGTAGTCGACTTAGGGAGTGTTG
CAGGCATCTATGGTAGCTGGCGTTTGTATACTCACGTATTGTCTTGTCAA
CATCGTGAATACAGAAACGCCATTTCCATGTCATCTGAAAGTGAGGATCG
GTGGGTCCACTTTGCAGTAGTAGGACAGGGCGTTCAGTGAGACTCAGGAC
TGATCGCTTTCAGTATGACATGTGCGACAGGTGATGCGGACGACTATAGC
ATAAATCTCTTTGAAGACAACCAGTTGGATCGTGTGCTGGATGCCAACGA
CAACAGTACACCAACCCTAACAGGCGACGAACAGGACTCTTCTTCCGTCA
TGAGCGAGCTCGACCTTCAAAACGCACAGCCGCCGTCAGCTGGGTGGCTT
GGGCAAGAAGAGGTCATTCCGTCTCAAGCCAACATCAACAATAGCAGGAG
CAACCAAACTAACCGTACCCTAGTCAACGTCGCTCCGAACAGTTGCGGAG
AAGGGGGCGGGGAGGGGTCGAGCCTTTTCGCTAGCTCTATCTCATCCGAC
ACCACTTTCGACGAGAGTTGCGAGCGGACCATGGCCGCGTCTTCCATGGC
CAGCGTATCTGATTACAGTGACGACGGCAGCTTACGCTCTATCGCTCCCC
GCGGTCACCTTCCATCTCCCTCTACTTACTCACGCGCAGTATCCGATGGC
GCGAGCGGGGCCGTATGTACGGACGCTGATGTAAATTCCTCCTACCTGAG
GCCAGCTTTGCTGCGCCCACGCCCTAGCGTCCAATCTACCCCAACAACCT
TGAGTAATCTTGCGCGTGTCTCTCCGGCACACGCGCGCAGCACGGTTACA
TCAGGCCTTGGGGCGCCAATTCTGCCCGCCACTTTCGTGCCGAATTTTTA
TGCAGGAGGCGCTGCTCGCTGTGCCGGGGATGGCAACTCTTCGGCCAACA
GCGCGGTATCGACACGTCCCGCTCTCGGCGGGTTTTATGCGACCACGGTA
CTGCCGACGGCCTCGGATGCGGCGATGCAGGCGCTTATGACAGGGCGGAA
GCGATTCAGGGACGAGGAGGCGGTCAGCAAGAGCGGAGAAGGCGTACGAC
GCCAGAGCGAAGTGGAAGGGATTAGTGCGGGGGGCATGGGCGCCGTCTCG
CCTGCCGTGAGGAGGCGCGCGAAGCGGGAGGAGCGATTGATGAAGAATCG
GGAGGCGGCGAATCGCTCTCGCATCAAGGTACCCGCTTTTCCTTTGTTCG
TATCACAGTTTCGATGAAGAAGCATGTCCTCCTCAAAACATTCCCTTTTG
TTCTTCTGTTTTTCTAATTTTTCGTTCAGGGGCAATTCAGCCGCGAGTTG
CTTTCTATTCTTGTGGTTCCCACATGATACTTGAATGCGAACTACCGTGA
GACGGGGTGTCGAGTGCTGTGTCCAGCATTCTATACCGCAGATACACACA
GGGGGAAACAAGATGGCGTCGGATTTTATCGTAAACTGCCTTCTTGCCGA
ACGCGGGACACGTGACGCGCTCGCGAAGCAGTCGATAACGCCTCCATGGA
CACCAGACGTACTGTTATAGGTCGCTATTTCCCAGAGGATTTTCCTGCCT
TGCCCGTCTCTAATCTGCCCACAATTTCCCTCTCATTGCCTTTCTCTCCT
CCTTAAACTCCAAACTCCCGCAACAGCGCAAAGAGATCCTGAGCGACCTG
GAAGATCGCGTTGACGTGCTCTCTCACAATCTCGACGAAGCCCGGCAAGA
CATCACGTCCCTGAACTCAGAGATCGCCTCACTCCGCGAGCAAAACTCCT
TCCTGCGAGGCAGGCTTTCAGCGGTTGGCCACGCGAACAATTTTCCGCCT
GCCTTACGCACACAACCCATCGTCGACACAAGAAGCACTACTCGGCGCCT
TTCGTCCGCTGGCAGCAGCCCTACGGGGCGCACGGAAGGAGGCAGCGGGT
TGGTCACGGGTGCGAACGCTTGTGCAGGCGCCGCGTGCGCTGCCCTGGCT
GTGATTAGCTGTGTCGCTTTATCCCCGGTCGGATACGGTGAACACCGCGA
ATTAACCGCGATGGGTACGGCGGGGAGGGCGGCGGGGCGGAGGGTACTCC
TATCGATCGAAGGCGGTAAATCGAGACCACTAGTTTCGGCTGAGGTCCAG
ACCCTGGATTCCGGTCTACGGTTGACCTACTTGGGCGGCACATGTTTGCT
AGGAATTTTGGTATTGCTAACTGTCGTCGCACCAATGGTCTATGTCAGGA
TGGTGAAGCGTCAGGGAAAGGATTCGAGGAACGGCGTGGGTATGGGCGGG
TTGGGCAGAGGTTGGGTACGTAAGCTCGTGTAGGCGGCTGTCGTATTTGT
TTCTCTTATGTTCGCGTCATCAGGAAATTGTGTTGCCCGGCTTTGATCTC
CGTTTTCCTCCACGTTTGTCATGCTGTGGCGTTTAATTTGGAATTAAATT
CAGAACTAGACGCCTTCACACATGAAATCTATTTTCGGCTTCTAGACCAT
TTGCTTCATTTCAGTTGAAGAACTTGGTCTTTGCCATGGAAATTGGATAG
GTATGATTCCTTAGTTGTCAGAATTGTCGGACCAATTTTTTTCTTCAGTT
TAGTTTGCGAGGGAACATGTACTTTTGTTCTGCCGAATGTGAGCACGTGT
AAAGATTTACCACGTTAATTAGCGCACGTCAATTCCAATTGCGTAGCACC
CCCGTGTACTTGATTAGCCCAGCTGTTGGAAGCACTGATAATACACAAGT
ACTGAACCGAAGATTTCAAGAATTCAGTCGTTGCTTAACTTGGCGATGTG
GATAAATTTACTGTCATAAAAGAACCGTTTTCTCGACCCATGAAGCATAA
ACCGTCGTGCCTAAGTAACCGTGGACCTACGCCCGAACGAGTACGGTAGC
TCGTGTACTGAGCATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTAGGTG
AAACTCCT back to topCoding sequence (CDS) from alignment at H-paniculata_contig1368:181..3588+ >mRNA_H-paniculata_contig1368.2263.1 ID=mRNA_H-paniculata_contig1368.2263.1|Name=mRNA_H-paniculata_contig1368.2263.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3468bp|location=Sequence derived from alignment at H-paniculata_contig1368:181..3588+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCGCTACCTCCAGATGCATTCGATTCACCGTCCTTGTTGAGCGATGT CGACAGTTGGGATGTATTTGCTGATCTTGATGGCGCTACCTCCAGATGCA TTCGATTCACCGTCCTTGTTGAGCGATGTCGACAGTTGGGATGTATTTGC TGATCTTGGTGATGCGGACGACTATAGCATAAATCTCTTTGAAGACAACC AGTTGGATCGTGTGCTGGATGCCAACGACAACAGTACACCAACCCTAACA GGCGACGAACAGGACTCTTCTTCCGTCATGAGCGAGCTCGACCTTCAAAA CGCACAGCCGCCGTCAGCTGGGTGGCTTGGGCAAGAAGAGGTCATTCCGT CTCAAGCCAACATCAACAATAGCAGGAGCAACCAAACTAACCGTACCCTA GTCAACGTCGCTCCGAACAGTTGCGGAGAAGGGGGCGGGGAGGGGTCGAG CCTTTTCGCTAGCTCTATCTCATCCGACACCACTTTCGACGAGAGTTGCG AGCGGACCATGGCCGCGTCTTCCATGGCCAGCGTATCTGATTACAGTGAC GACGGCAGCTTACGCTCTATCGCTCCCCGCGGTCACCTTCCATCTCCCTC TACTTACTCACGCGCAGTATCCGATGGCGCGAGCGGGGCCGTATGTACGG ACGCTGATGTAAATTCCTCCTACCTGAGGCCAGCTTTGCTGCGCCCACGC CCTAGCGTCCAATCTACCCCAACAACCTTGAGTAATCTTGCGCGTGTCTC TCCGGCACACGCGCGCAGCACGGTTACATCAGGCCTTGGGGCGCCAATTC TGCCCGCCACTTTCGTGCCGAATTTTTATGCAGGAGGCGCTGCTCGCTGT GCCGGGGATGGCAACTCTTCGGCCAACAGCGCGGTATCGACACGTCCCGC TCTCGGCGGGTTTTATGCGACCACGGTACTGCCGACGGCCTCGGATGCGG CGATGCAGGCGCTTATGACAGGGCGGAAGCGATTCAGGGACGAGGAGGCG GTCAGCAAGAGCGGAGAAGGCGTACGACGCCAGAGCGAAGTGGAAGGGAT TAGTGCGGGGGGCATGGGCGCCGTCTCGCCTGCCGTGAGGAGGCGCGCGA AGCGGGAGGAGCGATTGATGAAGAATCGGGAGGCGGCGAATCGCTCTCGC ATCAAGGTGATGCGGACGACTATAGCATAAATCTCTTTGAAGACAACCAG TTGGATCGTGTGCTGGATGCCAACGACAACAGTACACCAACCCTAACAGG CGACGAACAGGACTCTTCTTCCGTCATGAGCGAGCTCGACCTTCAAAACG CACAGCCGCCGTCAGCTGGGTGGCTTGGGCAAGAAGAGGTCATTCCGTCT CAAGCCAACATCAACAATAGCAGGAGCAACCAAACTAACCGTACCCTAGT CAACGTCGCTCCGAACAGTTGCGGAGAAGGGGGCGGGGAGGGGTCGAGCC TTTTCGCTAGCTCTATCTCATCCGACACCACTTTCGACGAGAGTTGCGAG CGGACCATGGCCGCGTCTTCCATGGCCAGCGTATCTGATTACAGTGACGA CGGCAGCTTACGCTCTATCGCTCCCCGCGGTCACCTTCCATCTCCCTCTA CTTACTCACGCGCAGTATCCGATGGCGCGAGCGGGGCCGTATGTACGGAC GCTGATGTAAATTCCTCCTACCTGAGGCCAGCTTTGCTGCGCCCACGCCC TAGCGTCCAATCTACCCCAACAACCTTGAGTAATCTTGCGCGTGTCTCTC CGGCACACGCGCGCAGCACGGTTACATCAGGCCTTGGGGCGCCAATTCTG CCCGCCACTTTCGTGCCGAATTTTTATGCAGGAGGCGCTGCTCGCTGTGC CGGGGATGGCAACTCTTCGGCCAACAGCGCGGTATCGACACGTCCCGCTC TCGGCGGGTTTTATGCGACCACGGTACTGCCGACGGCCTCGGATGCGGCG ATGCAGGCGCTTATGACAGGGCGGAAGCGATTCAGGGACGAGGAGGCGGT CAGCAAGAGCGGAGAAGGCGTACGACGCCAGAGCGAAGTGGAAGGGATTA GTGCGGGGGGCATGGGCGCCGTCTCGCCTGCCGTGAGGAGGCGCGCGAAG CGGGAGGAGCGATTGATGAAGAATCGGGAGGCGGCGAATCGCTCTCGCAT CAAGCGCAAAGAGATCCTGAGCGACCTGGAAGATCGCGTTGACGTGCTCT CTCACAATCTCGACGAAGCCCGGCAAGACATCACGTCCCTGAACTCAGAG ATCGCCTCACTCCGCGAGCAAAACTCCTTCCTGCGAGGCAGGCTTTCAGC GGTTGGCCACGCGAACAATTTTCCGCCTGCCTTACGCACACAACCCATCG TCGACACAAGAAGCACTACTCGGCGCCTTTCGTCCGCTGGCAGCAGCCCT ACGGGGCGCACGGAAGGAGGCAGCGGGTTGGTCACGGGTGCGAACGCTTG TGCAGGCGCCGCGTGCGCTGCCCTGGCTGTGATTAGCTGTGTCGCTTTAT CCCCGGTCGGATACGGTGAACACCGCGAATTAACCGCGATGGGTACGGCG GGGAGGGCGGCGGGGCGGAGGGTACTCCTATCGATCGAAGGCGGTAAATC GAGACCACTAGTTTCGGCTGAGGTCCAGACCCTGGATTCCGGTCTACGGT TGACCTACTTGGGCGGCACATGTTTGCTAGGAATTTTGGTATTGCTAACT GTCGTCGCACCAATGGTCTATGTCAGGATGGTGAAGCGTCAGGGAAAGGA TTCGAGGAACGGCGTGGGTATGGGCGGGTTGGGCAGAGGTTGGGTACGTA AGCTCGTGTAGCGCAAAGAGATCCTGAGCGACCTGGAAGATCGCGTTGAC GTGCTCTCTCACAATCTCGACGAAGCCCGGCAAGACATCACGTCCCTGAA CTCAGAGATCGCCTCACTCCGCGAGCAAAACTCCTTCCTGCGAGGCAGGC TTTCAGCGGTTGGCCACGCGAACAATTTTCCGCCTGCCTTACGCACACAA CCCATCGTCGACACAAGAAGCACTACTCGGCGCCTTTCGTCCGCTGGCAG CAGCCCTACGGGGCGCACGGAAGGAGGCAGCGGGTTGGTCACGGGTGCGA ACGCTTGTGCAGGCGCCGCGTGCGCTGCCCTGGCTGTGATTAGCTGTGTC GCTTTATCCCCGGTCGGATACGGTGAACACCGCGAATTAACCGCGATGGG TACGGCGGGGAGGGCGGCGGGGCGGAGGGTACTCCTATCGATCGAAGGCG GTAAATCGAGACCACTAGTTTCGGCTGAGGTCCAGACCCTGGATTCCGGT CTACGGTTGACCTACTTGGGCGGCACATGTTTGCTAGGAATTTTGGTATT GCTAACTGTCGTCGCACCAATGGTCTATGTCAGGATGGTGAAGCGTCAGG GAAAGGATTCGAGGAACGGCGTGGGTATGGGCGGGTTGGGCAGAGGTTGG GTACGTAAGCTCGTGTAG back to top
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