mRNA_H-paniculata_contig13669.2255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13669.2255.1
Unique NamemRNA_H-paniculata_contig13669.2255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13669.2255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13669contigH-paniculata_contig13669:2191..3475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size569
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929084.4154112-CDS-H-paniculata_contig13669:2192..26201622929084.4154112-CDS-H-paniculata_contig13669:2192..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 2193..2620 -
1691480725.0933025-CDS-H-paniculata_contig13669:2192..26201691480725.0933025-CDS-H-paniculata_contig13669:2192..2620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 2193..2620 -
1622929084.4262164-CDS-H-paniculata_contig13669:3336..34751622929084.4262164-CDS-H-paniculata_contig13669:3336..3475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 3337..3475 -
1691480725.103615-CDS-H-paniculata_contig13669:3336..34751691480725.103615-CDS-H-paniculata_contig13669:3336..3475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13669 3337..3475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13669.2255.1prot_H-paniculata_contig13669.2255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13669 2193..3475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13669.2255.1

>prot_H-paniculata_contig13669.2255.1 ID=prot_H-paniculata_contig13669.2255.1|Name=mRNA_H-paniculata_contig13669.2255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
RGGERADGRERSEGREVRVDGGPNSPSGGGLEDVGSWLESTMDADAARHL
LSMDHNGGGAASPSSSSATVGAAAPADELLAPSSSSSVPVPPPARRGGFG
RSASWRARMDRMNPSLAWDPVRLLPVQDELTFIVGGGAAGAGRTARFGAP
ATSGRRTRSLGVGGPGDWGTGFGGGSSRGREYGRDRVPM
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mRNA from alignment at H-paniculata_contig13669:2191..3475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13669.2255.1 ID=mRNA_H-paniculata_contig13669.2255.1|Name=mRNA_H-paniculata_contig13669.2255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1285bp|location=Sequence derived from alignment at H-paniculata_contig13669:2191..3475- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGTGGGGAAAGGGCCGACGGGCGCGAGCGATCGGAAGGTAGGGAGGT
AAGGGTAGACGGTGGTCCGAATAGTCCGAGTGGTGGTGGGTTGGAGGACG
TGGGGAGCTGGCTTGAGTCGACGATGGACGCAGATGCAGGTGTGTATGTG
TATGAGAGACTAAGGTTGAGAGAGAGAAAGAGACAGAGACATTTGGTACT
CTGGGGGGATGGGTGGTTTCGAAACCGTGCGCTTTTTTGTGCAGTTTCTC
CGTGCAGTTATGTCCTTAACGGTGGCAGTATGTTAATTTATTTTGTTTCT
TTCTATGAAAAGGAGTGCACGGAGATGTTTGGATTGTGATGTTGTGGTGT
GATCCGTCATTATCCGTGGCTCTTTGTGTTCGGGTATGGATACGGCTTTG
TGCTTTTTGTGTGAATGTGTATTGCCGCTCCACACCTCCTTGCGTGAGAA
TTTACGTCGGTGCACGGGTCGAGGTGACCGGTGGCGGAGTAGCATGCCCA
GGTTCTCTGTAATGGTACGGGACAATTAGTGCCGATGCCGGCGCGGGGGG
CGGTTTGTGCTTCTTGGCACGCACCCACGGGAAGAAGAAACACGTTCACT
CATTCACACATGCACATATGTGACACAATAGTATGGCACTTGGTCGTGTG
TGCTGGTTGTGTTTTCTACTATTTTTTTTTTTTCTTGTCTTGACTCTCTC
CATTTATCAAATTAACTACAAAGCAACAACCAACTCAACCAACCAACCAA
CCAATCATCCAGCCTAGACTCAAATATAAGCAAAACAAACACCGCACCAT
GCCACCGTTTGCTAACCACCACTACAACAAAAACAACAACAACGTGCTTC
TTCAGCGCGACATCTGCTATCTATGGACCACAACGGGGGAGGAGCAGCAT
CGCCCAGCTCCTCCTCTGCCACCGTTGGGGCGGCCGCCCCCGCCGATGAA
CTCCTGGCCCCTTCATCCTCCTCCTCGGTGCCGGTACCGCCCCCCGCCCG
GAGAGGCGGCTTCGGCCGGTCCGCCTCGTGGAGGGCGAGGATGGACAGGA
TGAACCCTTCGCTCGCCTGGGACCCCGTGCGGCTACTGCCAGTGCAAGAT
GAGTTGACCTTTATCGTAGGGGGCGGCGCGGCGGGGGCGGGACGGACGGC
GAGGTTTGGGGCTCCAGCGACCAGTGGTCGCAGAACTCGGTCACTTGGTG
TAGGCGGGCCAGGCGACTGGGGGACAGGGTTCGGGGGAGGTTCGTCGCGT
GGAAGGGAGTATGGACGGGATAGGGTACCGATGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13669:2191..3475-

>mRNA_H-paniculata_contig13669.2255.1 ID=mRNA_H-paniculata_contig13669.2255.1|Name=mRNA_H-paniculata_contig13669.2255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig13669:2191..3475- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGGTGGGGAAAGGGCCGACGGGCGCGAGCGATCGGAAGGTAGGGAGGT
AAGGGTAGACGGTGGTCCGAATAGTCCGAGTGGTGGTGGGTTGGAGGACG
TGGGGAGCTGGCTTGAGTCGACGATGGACGCAGATGCAGCGAGGTGGGGA
AAGGGCCGACGGGCGCGAGCGATCGGAAGGTAGGGAGGTAAGGGTAGACG
GTGGTCCGAATAGTCCGAGTGGTGGTGGGTTGGAGGACGTGGGGAGCTGG
CTTGAGTCGACGATGGACGCAGATGCAGCGCGACATCTGCTATCTATGGA
CCACAACGGGGGAGGAGCAGCATCGCCCAGCTCCTCCTCTGCCACCGTTG
GGGCGGCCGCCCCCGCCGATGAACTCCTGGCCCCTTCATCCTCCTCCTCG
GTGCCGGTACCGCCCCCCGCCCGGAGAGGCGGCTTCGGCCGGTCCGCCTC
GTGGAGGGCGAGGATGGACAGGATGAACCCTTCGCTCGCCTGGGACCCCG
TGCGGCTACTGCCAGTGCAAGATGAGTTGACCTTTATCGTAGGGGGCGGC
GCGGCGGGGGCGGGACGGACGGCGAGGTTTGGGGCTCCAGCGACCAGTGG
TCGCAGAACTCGGTCACTTGGTGTAGGCGGGCCAGGCGACTGGGGGACAG
GGTTCGGGGGAGGTTCGTCGCGTGGAAGGGAGTATGGACGGGATAGGGTA
CCGATGCGCGACATCTGCTATCTATGGACCACAACGGGGGAGGAGCAGCA
TCGCCCAGCTCCTCCTCTGCCACCGTTGGGGCGGCCGCCCCCGCCGATGA
ACTCCTGGCCCCTTCATCCTCCTCCTCGGTGCCGGTACCGCCCCCCGCCC
GGAGAGGCGGCTTCGGCCGGTCCGCCTCGTGGAGGGCGAGGATGGACAGG
ATGAACCCTTCGCTCGCCTGGGACCCCGTGCGGCTACTGCCAGTGCAAGA
TGAGTTGACCTTTATCGTAGGGGGCGGCGCGGCGGGGGCGGGACGGACGG
CGAGGTTTGGGGCTCCAGCGACCAGTGGTCGCAGAACTCGGTCACTTGGT
GTAGGCGGGCCAGGCGACTGGGGGACAGGGTTCGGGGGAGGTTCGTCGCG
TGGAAGGGAGTATGGACGGGATAGGGTACCGATG
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