mRNA_H-paniculata_contig13662.2252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13662.2252.1
Unique NamemRNA_H-paniculata_contig13662.2252.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: D7G459_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G459_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 7.010e-87
Identity = 149/252 (59.13%), Postives = 187/252 (74.21%), Query Frame = 2
Query:   35 RAAATAVLWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLE--GATGSGHGSKVLKKVAKQAP---YIVGPCRHDKECPLKSENGEMCRFTQKVPWNAADVVKCSVRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAF---RRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVK 766
            RAAATAV+W+LV+PGG LV+VEDGSAKGSHTVRSAR MVL   A   E  G TG   G++  K+  +Q P   Y++GPCRHDKECPL++  GE CR  QKVPWNA +V   +V+SV FSYV IRKG PE +    E    R +SSSSVDLLKAF   ++    GG L  AM+SLGT+GISD  L+R+DWARL+RKP+K +GH +LD+C+P+G++QRK+ +K KWKG  G+++AARKSQ+GGLWPYLDN   K
Sbjct:  357 RAAATAVMWSLVAPGGVLVLVEDGSAKGSHTVRSARHMVLRPPAPSPEQGGDTGKQQGNRRGKRNERQPPPRPYVIGPCRHDKECPLQA--GEFCRLQQKVPWNAVNVTSSAVKSVSFSYVSIRKGPPEREAGQDERVGSR-TSSSSVDLLKAFVQQKKNLNDGGSLRDAMDSLGTDGISDAILRRDDWARLVRKPLKAKGHALLDVCSPEGNIQRKVVAKGKWKGVPGMFVAARKSQVGGLWPYLDNHDYK 605          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A0A835Z4D0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D0_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.740e-33
Identity = 95/287 (33.10%), Postives = 138/287 (48.08%), Query Frame = 2
Query:   35 RAAATAVLWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATG--------------------SGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEMCRFTQKVPWNAADVVKCSVRSVLFSYVVIRKGAPE---------------LKVSTSESTEPRKSSSSSVDLLK------AFRRIGQAGGRLGAAMESLGTEG--ISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVK 766
            R AA A+LW LV PGGAL +VE G A+GSH VRS RQ +L      L G+                      S  G K  +K  +    ++ PCRHD  CP+  E  ++ R +Q++  N        +    FSYVV+ K   +                 V+ + + +P  +   +V   +      A+           AA ++ G  G  + D +  R +WAR+IR P K   HV+L LC+P G L+R I +K +W+ A G+YIAARK++LGGLWP+L  V +K
Sbjct:  299 RLAAAALLWRLVKPGGALAVVEHGDARGSHVVRSLRQSILDGTEGHLAGSPDEYRXXXXXXXXXXXXXXXXXSVVGGKRRRKRPEGRARVIAPCRHDGRCPMGDEP-KVPRMSQRLEGNTG------LSHEAFSYVVLHKATDDEPQPGDITTSVALLRTLVAANATEDPEAALGEAVTNFQRAQGDPAYIPTADTDAAGAAAADAPGDSGGGLLDTAAVRGEWARIIRNPAKAHQHVLLHLCSPQGALERVIINKARWRHAQGVYIAARKARLGGLWPWLPEVYIK 578          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: W7U9Y7_9STRA (Mitochondrial chloroplast ribosome small subunit component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Y7_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.970e-32
Identity = 95/250 (38.00%), Postives = 131/250 (52.40%), Query Frame = 2
Query:   35 RAAATAVLWNLVSP-GGALVIVEDGSAKGSHTVRSARQMVLSSAASGLE-GATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEMCRFTQKVP----WNAADVVKCSVRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRL-GAAMESLGTEGISDESLK----REDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLD 751
            RA AT+++W LV+  GG LV+VEDGS +GS  VRS R++VL     G + G TG            +     VGPC+HD+ CPL  E  E CRF+Q++P               + V FSY +++K  P          E RK   + ++ L   R      G   GAA      +   + +L+    RE W RLIR P K +GHV LDLCTP G+L+R + +K+  +   G Y+AARK+Q GGLWP+ D
Sbjct:  350 RALATSIMWELVAENGGFLVVVEDGSPEGSRLVRSVRKLVLEGGDPGTQAGTTG-----------PQARARTVGPCQHDRPCPLPRE--EWCRFSQRIPIGRLHRRIGKPGSGYKDVAFSYTILKK-LPGTGEDGEGDKEGRKWGDARLEALHRLRYGDSGKGEEDGAAYPYRPKDRDWEVALQADPGREGWGRLIRNPKKKKGHVHLDLCTPAGELERVMVAKRATRALPGKYMAARKAQWGGLWPFPD 585          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A0A7S0KPV4_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KPV4_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 3.450e-22
Identity = 83/249 (33.33%), Postives = 116/249 (46.59%), Query Frame = 2
Query:   56 LWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGE-----MCRFTQKVPWNAA-DVVKCSVRSVL---FSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGI----YIAARKSQLGGLWPYLDNVSV 763
            LW  V+PGG LVI E G+ KGS  VR AR +VL  A   +E    S    +     A    Y+V PC+HDK CP+K E+ E      C F Q+   ++    +K S +      FSYVV+RK         +E    R +         A               E      ++ ES   EDW+R+IR P K +GHV+++LCT  G+L+R   +K   +G   I    Y  ARK + G LWPY +  ++
Sbjct:  361 LWERVAPGGILVISEPGTPKGSLIVRRARHLVLEVARREMEQ---SARRLQAEPDGADVQAYVVAPCQHDKACPVKDEHREDGFSTWCHFPQRALRSSYYREIKQSAKPYQDEKFSYVVLRKMTRAQARQEAELATKRAAGRRQTPNATANDNADXXXXXXXXXXEEAFHAHVARESS--EDWSRVIRHPHKRKGHVVVELCTSRGELERATIAKSHGQGDWAIGADGYKFARKLRWGDLWPYANKTTI 604          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: C1MPA4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MPA4_MICPC)

HSP 1 Score: 94.0 bits (232), Expect = 1.380e-17
Identity = 82/280 (29.29%), Postives = 128/280 (45.71%), Query Frame = 2
Query:   56 LWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQAP-YIVGPCRHDKECPLKSENGEMCRFTQKVPWNAA--DVVKCS----VRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGA-------AMES--------------LGTEGISDESLKRED-----------------WARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGAT---GIYIAARKSQLGGLWPYLD 751
            LW+ V+ GGALV++E G+ +GS  +R AR +VL              H  +  ++       ++V PC+HD++CP+   +   C F+ +V        ++K      +++  FSYV+IR+ + E   +  E T  R         + A  R GQ  G L A        +ES               G+E ++ +  + E+                 W R++R P+K +GHVILDLCT DG+L R I +K   +      G Y  ARKS+ G LWP+ D
Sbjct:  431 LWSKVNLGGALVLIETGTPRGSDLIRFARSIVLE-------------HERQYAEREGTAIDAHVVAPCQHDRKCPMDGLD-TWCHFSVRVKRTEMHRQMMKRGRGPELQNERFSYVIIRRISRE---NAREETLKRAK-------IIAVEREGQWEGDLDADDXXXXXXVESDVEDFFTKDEEPMVFGSEAVNYDEYEDEEEELESLTDMAALSSSYTWGRMVRPPMKRKGHVILDLCTADGELSRHIVAKSHARETAVGRGGYKHARKSRWGDLWPFRD 686          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: CO111_SCHPO (Rsm22-cox11 tandem protein 1, mitochondrial n=2 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=CO111_SCHPO)

HSP 1 Score: 87.4 bits (215), Expect = 2.160e-15
Identity = 79/250 (31.60%), Postives = 110/250 (44.00%), Query Frame = 2
Query:   56 LWNLVS-PGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQA-PYIVGPCRHDKECPLKSENG---EMCRFTQKV---PWNAADVVKCSVRSV---LFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVKSP 772
            LW+LVS  GG LV+ E G+ +G   ++ AR  +L                 K      KQ   +IV PC HD  CP+  ENG    +C F Q     P++   V +   RS     +SYVVI+KG      +T++  +      +  DLL                      E ++  S   ++W R+IR P+K  GHVI+D+C  D  L+R I  K + K A   Y  ARKS  G L+P    V   SP
Sbjct:  271 LWSLVSNDGGLLVLCERGTKRGFSLIQRARTFLL----------------QKSKNTSDKQFNAHIVAPCPHDGRCPIDIENGVRANICSFKQHFFLSPFSRLYVPRSHRRSSDRSHYSYVVIQKGITRPLNNTTQRFK------NDEDLL----------------------ENVNVTSPTLKNWPRIIRPPLKRDGHVIIDVCDSDARLRRNIVPKSQGKLA---YRLARKSAWGDLFPLEGKVQSTSP 473          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: I2CRK7_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRK7_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 2.420e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  566 REDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLD 751
            RE W RLIR P K +GHV LDLCTP G+L+R + +K+  +   G Y+AARK+Q GGLWP+ D
Sbjct:   56 REGWGRLIRNPKKKKGHVHLDLCTPAGELERVMVAKRATRALPGKYMAARKAQWGGLWPFPD 117          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: E5R084_ARTGP (37S ribosomal protein S22 n=1 Tax=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) TaxID=535722 RepID=E5R084_ARTGP)

HSP 1 Score: 85.5 bits (210), Expect = 9.950e-15
Identity = 73/258 (28.29%), Postives = 109/258 (42.25%), Query Frame = 2
Query:   56 LWNLVSP-GGALVIVEDGSAKGSHTVRSARQMVLS------SAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEM------CRFTQK-----VPWNAADVVKCSVRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVKSPV 775
            LW++++P GG L+++E G  +G   +  AR M+L        A  G + A  + HG     +V K    IV PC     CP+  E G M      CRF Q+     V          +     FSY+ +++G    ++      E   ++        AF     AG      +E     G  +  +    W R++  PIK +GHV +DLCTP+G ++R    +   K A   Y  ARKS  G LWP      +  PV
Sbjct:  509 LWSMLNPEGGILILLEKGHKEGFAAIGGARAMILERLIKSPKAPEGSDSAWETQHG-----QVEKSKGMIVAPCTTHSRCPMYVEPGTMKNPKQFCRFAQRYVRPHVLQRILGNPSHNHEDAEFSYLAVQRGIDRREIDGLVQDEHTTNA--------AF-----AGYEHSTDVEETSAGGAGNNVIDPLSWPRVVLPPIKRKGHVSMDLCTPEGKIERWTVPRSFSKQA---YRDARKSSWGDLWPLGAKTRIHRPV 745          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A0A1S8VFY7_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VFY7_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 3.270e-14
Identity = 67/262 (25.57%), Postives = 115/262 (43.89%), Query Frame = 2
Query:   56 LWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEMCRFTQKVPWNAADVVKCSVR-------SVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKRE--DWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPY--LDNVSVKSPVGEKAGDHEAEK 808
            LWN     G LV+++ G+  G   +  AR  +L+ A                         ++V PC H+K CP+  ++   C ++Q++  N  +VV+ +          + FSYV IR+GA   K+    ST+     S++ DL K                           +LK+   DW RL   P+K + HV++D+CTP+G + R   +K+    ++  Y  ARK   G  WP+     V +++P  ++  DH+ ++
Sbjct:  275 LWNQTR--GILVLIDRGTPNGFLHIAEARAAILAMA---------------TPDDAEHPNAHVVSPCSHEKPCPMMVDSKSWCHYSQRIYRN--EVVRSTTNYHNSDHEDIKFSYVAIRRGARPAKIEEQISTK-----SAASDLSK--------------------WSDAEKSTLKKMSLDWPRLTAPPMKKKKHVLIDMCTPEGQIHRVTATKQ----SSPFYKDARKLHWGDQWPHPPTSAVLIRAPQADR--DHQQQE 486          
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A2QNP8_ASPNC (Aspergillus niger contig An07c0180, genomic contig n=10 Tax=Aspergillus TaxID=5052 RepID=A2QNP8_ASPNC)

HSP 1 Score: 82.0 bits (201), Expect = 1.450e-13
Identity = 78/274 (28.47%), Postives = 129/274 (47.08%), Query Frame = 2
Query:   56 LWNLVSP-GGALVIVEDGSAKGSHTVRSARQMVL-----SSAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENG------EMCRFTQKV--PWNAADVVKCSVRS---VLFSYVVIRKGAPE-LKVSTSESTEPRKSSSSSV-DLLKAFRRIGQAGGRLGAAMESLGTEGISDES--LKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPY--LDNVSVKSPVGEKAGDHEAEK 808
            LWNL++P GG L+++E G  KG   V  AR M+L     S  ++  E  T S      ++K   +A  IV PC +  +CP+    G      + C F Q+   P     ++    R+   + FSY+ +++G    ++ S  + TE   ++     D ++  ++  +A      A E+  T     E+  +      R++ +P+K +GHVI DLCTP G ++R    +   + A   Y  ARKSQ G LW       V+    +GEK G+ + E+
Sbjct:  525 LWNLLNPNGGVLILLEKGHQKGFEAVAGARDMLLKRFISSPGSTRYENLTDSPEEDTFIEK---EAGMIVAPCTNHNKCPMYQIPGHTKGRRDYCHFQQRYIRPAFLQRIIGAKDRNHEDLKFSYIAVQRGVDRRIEDSIIQGTEAADAAFDGYEDAVEMPKQETEASANEAVASETQPTPTEQQETGGVNFLSLPRIVYQPMKRRGHVIFDLCTPAGKIERWTVPRSFSRQA---YKDARKSQWGDLWALGAKTRVARSLRLGEKHGEGKKER 792          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G459_ECTSI7.010e-8759.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4D0_9STRA1.740e-3333.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U9Y7_9STRA2.970e-3238.00Mitochondrial chloroplast ribosome small subunit c... [more]
A0A7S0KPV4_9CHLO3.450e-2233.33Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
C1MPA4_MICPC1.380e-1729.29Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
CO111_SCHPO2.160e-1531.60Rsm22-cox11 tandem protein 1, mitochondrial n=2 Ta... [more]
I2CRK7_NANGC2.420e-1556.45Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
E5R084_ARTGP9.950e-1528.2937S ribosomal protein S22 n=1 Tax=Arthroderma gyps... [more]
A0A1S8VFY7_9FUNG3.270e-1425.57Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A2QNP8_ASPNC1.450e-1328.47Aspergillus niger contig An07c0180, genomic contig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13662contigH-paniculata_contig13662:2176..5378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.7
Seed ortholog evalue2.1e-73
Seed eggNOG ortholog2880.D7G459
KEGG rclassRC00553
KEGG koko:K01469
KEGG ReactionR00251
KEGG Pathwayko00480,map00480
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.Ribosomal small subunit Rsm22
EggNOG OGsCOG5459@1,KOG2539@2759
EC3.5.2.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size950
Cds size948
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.746483-CDS-H-paniculata_contig13662:2175..24631622929083.746483-CDS-H-paniculata_contig13662:2175..2463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 2176..2463 -
1691480724.8977249-CDS-H-paniculata_contig13662:2175..24631691480724.8977249-CDS-H-paniculata_contig13662:2175..2463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 2176..2463 -
1622929083.76476-CDS-H-paniculata_contig13662:2825..29531622929083.76476-CDS-H-paniculata_contig13662:2825..2953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 2826..2953 -
1691480724.908393-CDS-H-paniculata_contig13662:2825..29531691480724.908393-CDS-H-paniculata_contig13662:2825..2953Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 2826..2953 -
1622929083.7775662-CDS-H-paniculata_contig13662:3385..35151622929083.7775662-CDS-H-paniculata_contig13662:3385..3515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 3386..3515 -
1691480724.9175544-CDS-H-paniculata_contig13662:3385..35151691480724.9175544-CDS-H-paniculata_contig13662:3385..3515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 3386..3515 -
1622929083.7914226-CDS-H-paniculata_contig13662:3925..40091622929083.7914226-CDS-H-paniculata_contig13662:3925..4009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 3926..4009 -
1691480724.9318242-CDS-H-paniculata_contig13662:3925..40091691480724.9318242-CDS-H-paniculata_contig13662:3925..4009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 3926..4009 -
1622929083.8097513-CDS-H-paniculata_contig13662:4629..47721622929083.8097513-CDS-H-paniculata_contig13662:4629..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 4630..4772 -
1691480724.9437828-CDS-H-paniculata_contig13662:4629..47721691480724.9437828-CDS-H-paniculata_contig13662:4629..4772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 4630..4772 -
1622929083.825555-CDS-H-paniculata_contig13662:5202..53771622929083.825555-CDS-H-paniculata_contig13662:5202..5377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 5203..5377 -
1691480724.955803-CDS-H-paniculata_contig13662:5202..53771691480724.955803-CDS-H-paniculata_contig13662:5202..5377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 5203..5377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.839948-UTR-H-paniculata_contig13662:5377..53781622929083.839948-UTR-H-paniculata_contig13662:5377..5378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13662 5378..5378 -
1691480724.9660733-UTR-H-paniculata_contig13662:5377..53781691480724.9660733-UTR-H-paniculata_contig13662:5377..5378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13662 5378..5378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13662.2252.1prot_H-paniculata_contig13662.2252.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13662 2176..5377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13662.2252.1

>prot_H-paniculata_contig13662.2252.1 ID=prot_H-paniculata_contig13662.2252.1|Name=mRNA_H-paniculata_contig13662.2252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
MLEFVAFIVSCRAAATAVLWNLVSPGGALVIVEDGSAKGSHTVRSARQMV
LSSAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEM
CRFTQKVPWNAADVVKCSVRSVLFSYVVIRKGAPELKVSTSESTEPRKSS
SSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPI
KGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLD
NVSVKSPVGEKAGDHEAEKEWDGMDEYDPDNELDSDDEGDVDGRGRRRKR
RQFAFRLDATEGSGFG
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mRNA from alignment at H-paniculata_contig13662:2176..5378-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13662.2252.1 ID=mRNA_H-paniculata_contig13662.2252.1|Name=mRNA_H-paniculata_contig13662.2252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3203bp|location=Sequence derived from alignment at H-paniculata_contig13662:2176..5378- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGCTTGAATTTGTAGCATTTATCGTGTCTTGCAGAGCAGCGGCGACCG CTGTTCTGTGGAATCTGGTGTCTCCGGGAGGCGCCTTGGTCATTGTGGAG GACGGCAGTGCTAAGGGATCGCACACGGTGCGTTCCGCGAGACAGATGGT GCTGTCCTCAGCAGCTTCAGGGCTAGGTGAGGAAGCTGGCTCGCATCGAT ACGCAGTATCTCAATCGCGTTTCGCGTTGGGAAGGGAGGGTGACAGGTGC TTGCAATCGTGGTATCTGCACGGCAGTTTCAACATGTGGAGTTTACTATC GCGTGGACACTGCACCCATTTTTGTTTCCCTAGGTACCTCTCAGGGGACC ATGGACCCCAGTATTTCTTTTCCCTACCAAGTATAGCCAAAGTAGGTCAT TGCTCATCGGCAGATGGACCTACTTGAATCCACGCGTTCGGACATTGGGC CGCATCTAGTTAAAAACCCGATCGTCTTTCCTCTTTTTTTCAAACGCAAG TTCCTGTAGCTACTAGTGACGTGCCCAGCTGAGGTCTGACCACAGAAAAT ACGTACTGTACCGCCCGCCCCAATCGCGCCTTTTTGGGATCAACCCTACG TCTCAGAGGGAGCCACGGGGTCAGGCCATGGCTCGAAGGTGCTGAAGAAG GTCGCTAAACAAGCCCCTTACATTGTGGGCCCATGTCGCCATGATAAGGA GTGCCCGCTCAAATCGGAAAATGGCGAAATGTGTCGGTTCACGCAAAAGG TGACTTTTTAACAGGGGGAGAAGTTGCGTGAAGCTAGTCTTTGACCAGCG GTGGGTGAAAAAGCACGGCATAATTTTGATTGATCAGGTTGATCTACCTA TGTACCGGTATTGGAAGAGGAAGTAATGATGGTGAACGGCGTGGAATATA CTGTGTGCGAGCGGGACCTTGGGCAGAAAACAAACCGTCGCCTGTGTGCG GGTTACTAGTAGATTCGCGCCGCCTAACATAAGGAACTAACTACACCAGG AGCAGCTACGGCAGTGTCGTTGTTTGTGTACTTTAGATTTGCTGTGGTTA AGGGTTGATTCCGATCGGGGTTAACATGGTGAAGTGTGAAGAATGCACCA CGATCTGCTGAGGGACCTCACAACATTAGGATTTGACACTGCTGAATGCT TACACACTGCGCACGACTTTTTGTGCGGGCGACTGAAACTATGCACCAAT GAGGGAAAAATGCAAACGTATCGTGGGTACATATATTCTCCAGTTGTCAT GCCTACGTTTTCAAGCGTGGACTGCCTGGGTCTGTGTTTGGTTGAGGTGA AGCGCTAAGGTGCTCATTCGGGTTTGTTTCACCGTTTAATTTTGTTTGTT TATTTGGTGTTGTTCTCAGGTTCCTTGGAACGCGGCGGATGTGGTCAAGT GTTCAGTGAGATCTGTTCTGTTCTCCTATGTGGTCATTCGGAAGGGTGCT CCGGTGAGACCGACCACACTTTGTTCAGCTCAGCACTTCGTAGCCTACCA TGTTTCTTATCATTTATGTACGCAGTAGCGGAAATCTGTCATGTATAGAG CCAATGGCCACATAGCTGGAGAACGGTTTGTGCACCATCTGCCGAAACAC GAATATTTTATGTCTCCTGATAGACTGCGTCAGGGGCCTGGCACAAGAGG CGATTAGACGCGACTGCAGATGCTGCACGAACGAGTTATGTTGCAGAGTA GGGTACCCCTGTCGGGTGCCAACTTTGGCGTGACATTTTCTTGTTGGTGG TGGTGGTGGCGGCGGCGGTGTTGATGATCTAACGTCTGATGACGATTGTG GTGATATGTTGTCTAAGTGGATCTTTGGCCTCCAAACGTATGACTCTCCT TTGATTCTCTCAGGAATTGAAAGTCTCAACAAGCGAGTCGACCGAGCCTC GCAAGTCATCATCGTCGTCTGTTGATCTTCTCAAGGCTTTCCGCAGGATC GGTCAAGCAGGTGGCAGGTTGGGCGCGGCAATGGAATCACTCGGTAAGTT GAAAAAGGGTAATGTGACGTCATGTCGGAAGCAGGGTTCTAAAGTCCAGG GTGCTTTTCATGAAAGCGTTCAGCTGGCCGTCGATGTTTATCTGGTAGGG AAGCAGTGAAATCAATCAACCAAATGACCAATTCTCAGTTGGCTGAGTTT GACAAATGCATACAAGTAGTGAGCGAAATATGGATATTTTCCTGGGTAAA AATATTGGTTACTATTCGTTGCAGGAAGAATAGCCTATAGTAGTACGCGT GTAACCGCGGCGCTGCTGCCAAATTATGGATTTTATGCATTAATGTGTTA TACGTCATTCACGTGCGCGCCACGATGCTCTTCACTCAATCCTAACACTT CTCTCTTCGAACCAATGTGTTTGTAATATAAAATGGTCGCATTTCTTGCC TGTTTCTCGCGAAACCATATCTCAGGTACCGAGGGAATTTCGGACGAGTC TCTGAAGCGGGAAGATTGGGCAAGACTCATCCGCAAGCCGATCAAGGGCC AAGGACATGTGATATTGGATCTATGCACCCCGGACGGTGACCTTCAGCGG AAGGTGCCGAACAAATGGGGAAAAGGTTGAAATAGTGAGCCATGTACTTT GCGCCAGGAACAGGTTAAAACTTGCATCAGAAGAGCTGGACAGTTGACAC TTTTCTTACTGTAGGCGAGGCCCATTACTCTTACAACATCGAGCAGGCAG TCTTGCTAAATGCCGTTCCCGTGGGACCCACGCTCGGCATGTGTCCCTTG CCATGCTCCCTTGCCATGGTGTTTCTACGTTGCCGCAACCCCTCACTATT TGCGTGTGTTCTGCTGATTGCTGCTGAGTTTTCCTCTCGCTACGCTTGAG CTTGCGCTTGGAATATTCTCTCTTTCTGTCTCTCTCTCCATCTCTCTTAT ATATTTATCTGTCAGATCGAATCGAAAAAGAAATGGAAAGGTGCTACAGG GATATATATTGCCGCGAGAAAGTCTCAGTTGGGAGGGCTGTGGCCATACC TTGACAACGTTAGCGTCAAGTCTCCGGTAGGAGAGAAAGCAGGGGACCAC GAAGCAGAGAAAGAATGGGACGGCATGGACGAGTATGATCCCGACAACGA GCTTGACTCGGATGATGAAGGGGACGTGGATGGCAGAGGTAGAAGACGAA AAAGGCGACAATTCGCTTTTAGATTGGACGCAACAGAAGGTAGTGGGTTC GGC
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Coding sequence (CDS) from alignment at H-paniculata_contig13662:2176..5378-

>mRNA_H-paniculata_contig13662.2252.1 ID=mRNA_H-paniculata_contig13662.2252.1|Name=mRNA_H-paniculata_contig13662.2252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig13662:2176..5378- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGAATTTGTAGCATTTATCGTGTCTTGCAGAGCAGCGGCGACCGC
TGTTCTGTGGAATCTGGTGTCTCCGGGAGGCGCCTTGGTCATTGTGGAGG
ACGGCAGTGCTAAGGGATCGCACACGGTGCGTTCCGCGAGACAGATGGTG
CTGTCCTCAGCAGCTTCAGGGCTAGATGCTTGAATTTGTAGCATTTATCG
TGTCTTGCAGAGCAGCGGCGACCGCTGTTCTGTGGAATCTGGTGTCTCCG
GGAGGCGCCTTGGTCATTGTGGAGGACGGCAGTGCTAAGGGATCGCACAC
GGTGCGTTCCGCGAGACAGATGGTGCTGTCCTCAGCAGCTTCAGGGCTAG
AGGGAGCCACGGGGTCAGGCCATGGCTCGAAGGTGCTGAAGAAGGTCGCT
AAACAAGCCCCTTACATTGTGGGCCCATGTCGCCATGATAAGGAGTGCCC
GCTCAAATCGGAAAATGGCGAAATGTGTCGGTTCACGCAAAAGAGGGAGC
CACGGGGTCAGGCCATGGCTCGAAGGTGCTGAAGAAGGTCGCTAAACAAG
CCCCTTACATTGTGGGCCCATGTCGCCATGATAAGGAGTGCCCGCTCAAA
TCGGAAAATGGCGAAATGTGTCGGTTCACGCAAAAGGTTCCTTGGAACGC
GGCGGATGTGGTCAAGTGTTCAGTGAGATCTGTTCTGTTCTCCTATGTGG
TCATTCGGAAGGGTGCTCCGGTTCCTTGGAACGCGGCGGATGTGGTCAAG
TGTTCAGTGAGATCTGTTCTGTTCTCCTATGTGGTCATTCGGAAGGGTGC
TCCGGAATTGAAAGTCTCAACAAGCGAGTCGACCGAGCCTCGCAAGTCAT
CATCGTCGTCTGTTGATCTTCTCAAGGCTTTCCGCAGGATCGGTCAAGCA
GGTGGCAGGTTGGGCGCGGCAATGGAATCACTCGGAATTGAAAGTCTCAA
CAAGCGAGTCGACCGAGCCTCGCAAGTCATCATCGTCGTCTGTTGATCTT
CTCAAGGCTTTCCGCAGGATCGGTCAAGCAGGTGGCAGGTTGGGCGCGGC
AATGGAATCACTCGGTACCGAGGGAATTTCGGACGAGTCTCTGAAGCGGG
AAGATTGGGCAAGACTCATCCGCAAGCCGATCAAGGGCCAAGGACATGTG
ATATTGGATCTATGCACCCCGGACGGTGACCTTCAGCGGAAGGTACCGAG
GGAATTTCGGACGAGTCTCTGAAGCGGGAAGATTGGGCAAGACTCATCCG
CAAGCCGATCAAGGGCCAAGGACATGTGATATTGGATCTATGCACCCCGG
ACGGTGACCTTCAGCGGAAGATCGAATCGAAAAAGAAATGGAAAGGTGCT
ACAGGGATATATATTGCCGCGAGAAAGTCTCAGTTGGGAGGGCTGTGGCC
ATACCTTGACAACGTTAGCGTCAAGTCTCCGGTAGGAGAGAAAGCAGGGG
ACCACGAAGCAGAGAAAGAATGGGACGGCATGGACGAGTATGATCCCGAC
AACGAGCTTGACTCGGATGATGAAGGGGACGTGGATGGCAGAGGTAGAAG
ACGAAAAAGGCGACAATTCGCTTTTAGATTGGACGCAACAGAAGGTAGTG
GGTTCGGCATCGAATCGAAAAAGAAATGGAAAGGTGCTACAGGGATATAT
ATTGCCGCGAGAAAGTCTCAGTTGGGAGGGCTGTGGCCATACCTTGACAA
CGTTAGCGTCAAGTCTCCGGTAGGAGAGAAAGCAGGGGACCACGAAGCAG
AGAAAGAATGGGACGGCATGGACGAGTATGATCCCGACAACGAGCTTGAC
TCGGATGATGAAGGGGACGTGGATGGCAGAGGTAGAAGACGAAAAAGGCG
ACAATTCGCTTTTAGATTGGACGCAACAGAAGGTAGTGGGTTCGGC
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