mRNA_H-paniculata_contig13662.2252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: D7G459_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G459_ECTSI) HSP 1 Score: 284 bits (726), Expect = 7.010e-87 Identity = 149/252 (59.13%), Postives = 187/252 (74.21%), Query Frame = 2 Query: 35 RAAATAVLWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLE--GATGSGHGSKVLKKVAKQAP---YIVGPCRHDKECPLKSENGEMCRFTQKVPWNAADVVKCSVRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAF---RRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVK 766 RAAATAV+W+LV+PGG LV+VEDGSAKGSHTVRSAR MVL A E G TG G++ K+ +Q P Y++GPCRHDKECPL++ GE CR QKVPWNA +V +V+SV FSYV IRKG PE + E R +SSSSVDLLKAF ++ GG L AM+SLGT+GISD L+R+DWARL+RKP+K +GH +LD+C+P+G++QRK+ +K KWKG G+++AARKSQ+GGLWPYLDN K Sbjct: 357 RAAATAVMWSLVAPGGVLVLVEDGSAKGSHTVRSARHMVLRPPAPSPEQGGDTGKQQGNRRGKRNERQPPPRPYVIGPCRHDKECPLQA--GEFCRLQQKVPWNAVNVTSSAVKSVSFSYVSIRKGPPEREAGQDERVGSR-TSSSSVDLLKAFVQQKKNLNDGGSLRDAMDSLGTDGISDAILRRDDWARLVRKPLKAKGHALLDVCSPEGNIQRKVVAKGKWKGVPGMFVAARKSQVGGLWPYLDNHDYK 605
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A0A835Z4D0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D0_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.740e-33 Identity = 95/287 (33.10%), Postives = 138/287 (48.08%), Query Frame = 2 Query: 35 RAAATAVLWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATG--------------------SGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEMCRFTQKVPWNAADVVKCSVRSVLFSYVVIRKGAPE---------------LKVSTSESTEPRKSSSSSVDLLK------AFRRIGQAGGRLGAAMESLGTEG--ISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVK 766 R AA A+LW LV PGGAL +VE G A+GSH VRS RQ +L L G+ S G K +K + ++ PCRHD CP+ E ++ R +Q++ N + FSYVV+ K + V+ + + +P + +V + A+ AA ++ G G + D + R +WAR+IR P K HV+L LC+P G L+R I +K +W+ A G+YIAARK++LGGLWP+L V +K Sbjct: 299 RLAAAALLWRLVKPGGALAVVEHGDARGSHVVRSLRQSILDGTEGHLAGSPDEYRXXXXXXXXXXXXXXXXXSVVGGKRRRKRPEGRARVIAPCRHDGRCPMGDEP-KVPRMSQRLEGNTG------LSHEAFSYVVLHKATDDEPQPGDITTSVALLRTLVAANATEDPEAALGEAVTNFQRAQGDPAYIPTADTDAAGAAAADAPGDSGGGLLDTAAVRGEWARIIRNPAKAHQHVLLHLCSPQGALERVIINKARWRHAQGVYIAARKARLGGLWPWLPEVYIK 578
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: W7U9Y7_9STRA (Mitochondrial chloroplast ribosome small subunit component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U9Y7_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.970e-32 Identity = 95/250 (38.00%), Postives = 131/250 (52.40%), Query Frame = 2 Query: 35 RAAATAVLWNLVSP-GGALVIVEDGSAKGSHTVRSARQMVLSSAASGLE-GATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEMCRFTQKVP----WNAADVVKCSVRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRL-GAAMESLGTEGISDESLK----REDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLD 751 RA AT+++W LV+ GG LV+VEDGS +GS VRS R++VL G + G TG + VGPC+HD+ CPL E E CRF+Q++P + V FSY +++K P E RK + ++ L R G GAA + + +L+ RE W RLIR P K +GHV LDLCTP G+L+R + +K+ + G Y+AARK+Q GGLWP+ D Sbjct: 350 RALATSIMWELVAENGGFLVVVEDGSPEGSRLVRSVRKLVLEGGDPGTQAGTTG-----------PQARARTVGPCQHDRPCPLPRE--EWCRFSQRIPIGRLHRRIGKPGSGYKDVAFSYTILKK-LPGTGEDGEGDKEGRKWGDARLEALHRLRYGDSGKGEEDGAAYPYRPKDRDWEVALQADPGREGWGRLIRNPKKKKGHVHLDLCTPAGELERVMVAKRATRALPGKYMAARKAQWGGLWPFPD 585
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A0A7S0KPV4_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KPV4_9CHLO) HSP 1 Score: 107 bits (267), Expect = 3.450e-22 Identity = 83/249 (33.33%), Postives = 116/249 (46.59%), Query Frame = 2 Query: 56 LWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGE-----MCRFTQKVPWNAA-DVVKCSVRSVL---FSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGI----YIAARKSQLGGLWPYLDNVSV 763 LW V+PGG LVI E G+ KGS VR AR +VL A +E S + A Y+V PC+HDK CP+K E+ E C F Q+ ++ +K S + FSYVV+RK +E R + A E ++ ES EDW+R+IR P K +GHV+++LCT G+L+R +K +G I Y ARK + G LWPY + ++ Sbjct: 361 LWERVAPGGILVISEPGTPKGSLIVRRARHLVLEVARREMEQ---SARRLQAEPDGADVQAYVVAPCQHDKACPVKDEHREDGFSTWCHFPQRALRSSYYREIKQSAKPYQDEKFSYVVLRKMTRAQARQEAELATKRAAGRRQTPNATANDNADXXXXXXXXXXEEAFHAHVARESS--EDWSRVIRHPHKRKGHVVVELCTSRGELERATIAKSHGQGDWAIGADGYKFARKLRWGDLWPYANKTTI 604
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: C1MPA4_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MPA4_MICPC) HSP 1 Score: 94.0 bits (232), Expect = 1.380e-17 Identity = 82/280 (29.29%), Postives = 128/280 (45.71%), Query Frame = 2 Query: 56 LWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQAP-YIVGPCRHDKECPLKSENGEMCRFTQKVPWNAA--DVVKCS----VRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGA-------AMES--------------LGTEGISDESLKRED-----------------WARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGAT---GIYIAARKSQLGGLWPYLD 751 LW+ V+ GGALV++E G+ +GS +R AR +VL H + ++ ++V PC+HD++CP+ + C F+ +V ++K +++ FSYV+IR+ + E + E T R + A R GQ G L A +ES G+E ++ + + E+ W R++R P+K +GHVILDLCT DG+L R I +K + G Y ARKS+ G LWP+ D Sbjct: 431 LWSKVNLGGALVLIETGTPRGSDLIRFARSIVLE-------------HERQYAEREGTAIDAHVVAPCQHDRKCPMDGLD-TWCHFSVRVKRTEMHRQMMKRGRGPELQNERFSYVIIRRISRE---NAREETLKRAK-------IIAVEREGQWEGDLDADDXXXXXXVESDVEDFFTKDEEPMVFGSEAVNYDEYEDEEEELESLTDMAALSSSYTWGRMVRPPMKRKGHVILDLCTADGELSRHIVAKSHARETAVGRGGYKHARKSRWGDLWPFRD 686
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: CO111_SCHPO (Rsm22-cox11 tandem protein 1, mitochondrial n=2 Tax=Schizosaccharomyces pombe (strain 972 / ATCC 24843) TaxID=284812 RepID=CO111_SCHPO) HSP 1 Score: 87.4 bits (215), Expect = 2.160e-15 Identity = 79/250 (31.60%), Postives = 110/250 (44.00%), Query Frame = 2 Query: 56 LWNLVS-PGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQA-PYIVGPCRHDKECPLKSENG---EMCRFTQKV---PWNAADVVKCSVRSV---LFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVKSP 772 LW+LVS GG LV+ E G+ +G ++ AR +L K KQ +IV PC HD CP+ ENG +C F Q P++ V + RS +SYVVI+KG +T++ + + DLL E ++ S ++W R+IR P+K GHVI+D+C D L+R I K + K A Y ARKS G L+P V SP Sbjct: 271 LWSLVSNDGGLLVLCERGTKRGFSLIQRARTFLL----------------QKSKNTSDKQFNAHIVAPCPHDGRCPIDIENGVRANICSFKQHFFLSPFSRLYVPRSHRRSSDRSHYSYVVIQKGITRPLNNTTQRFK------NDEDLL----------------------ENVNVTSPTLKNWPRIIRPPLKRDGHVIIDVCDSDARLRRNIVPKSQGKLA---YRLARKSAWGDLFPLEGKVQSTSP 473
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: I2CRK7_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRK7_NANGC) HSP 1 Score: 80.9 bits (198), Expect = 2.420e-15 Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2 Query: 566 REDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLD 751 RE W RLIR P K +GHV LDLCTP G+L+R + +K+ + G Y+AARK+Q GGLWP+ D Sbjct: 56 REGWGRLIRNPKKKKGHVHLDLCTPAGELERVMVAKRATRALPGKYMAARKAQWGGLWPFPD 117
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: E5R084_ARTGP (37S ribosomal protein S22 n=1 Tax=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) TaxID=535722 RepID=E5R084_ARTGP) HSP 1 Score: 85.5 bits (210), Expect = 9.950e-15 Identity = 73/258 (28.29%), Postives = 109/258 (42.25%), Query Frame = 2 Query: 56 LWNLVSP-GGALVIVEDGSAKGSHTVRSARQMVLS------SAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEM------CRFTQK-----VPWNAADVVKCSVRSVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPYLDNVSVKSPV 775 LW++++P GG L+++E G +G + AR M+L A G + A + HG +V K IV PC CP+ E G M CRF Q+ V + FSY+ +++G ++ E ++ AF AG +E G + + W R++ PIK +GHV +DLCTP+G ++R + K A Y ARKS G LWP + PV Sbjct: 509 LWSMLNPEGGILILLEKGHKEGFAAIGGARAMILERLIKSPKAPEGSDSAWETQHG-----QVEKSKGMIVAPCTTHSRCPMYVEPGTMKNPKQFCRFAQRYVRPHVLQRILGNPSHNHEDAEFSYLAVQRGIDRREIDGLVQDEHTTNA--------AF-----AGYEHSTDVEETSAGGAGNNVIDPLSWPRVVLPPIKRKGHVSMDLCTPEGKIERWTVPRSFSKQA---YRDARKSSWGDLWPLGAKTRIHRPV 745
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A0A1S8VFY7_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VFY7_9FUNG) HSP 1 Score: 83.6 bits (205), Expect = 3.270e-14 Identity = 67/262 (25.57%), Postives = 115/262 (43.89%), Query Frame = 2 Query: 56 LWNLVSPGGALVIVEDGSAKGSHTVRSARQMVLSSAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENGEMCRFTQKVPWNAADVVKCSVR-------SVLFSYVVIRKGAPELKVSTSESTEPRKSSSSSVDLLKAFRRIGQAGGRLGAAMESLGTEGISDESLKRE--DWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPY--LDNVSVKSPVGEKAGDHEAEK 808 LWN G LV+++ G+ G + AR +L+ A ++V PC H+K CP+ ++ C ++Q++ N +VV+ + + FSYV IR+GA K+ ST+ S++ DL K +LK+ DW RL P+K + HV++D+CTP+G + R +K+ ++ Y ARK G WP+ V +++P ++ DH+ ++ Sbjct: 275 LWNQTR--GILVLIDRGTPNGFLHIAEARAAILAMA---------------TPDDAEHPNAHVVSPCSHEKPCPMMVDSKSWCHYSQRIYRN--EVVRSTTNYHNSDHEDIKFSYVAIRRGARPAKIEEQISTK-----SAASDLSK--------------------WSDAEKSTLKKMSLDWPRLTAPPMKKKKHVLIDMCTPEGQIHRVTATKQ----SSPFYKDARKLHWGDQWPHPPTSAVLIRAPQADR--DHQQQE 486
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Match: A2QNP8_ASPNC (Aspergillus niger contig An07c0180, genomic contig n=10 Tax=Aspergillus TaxID=5052 RepID=A2QNP8_ASPNC) HSP 1 Score: 82.0 bits (201), Expect = 1.450e-13 Identity = 78/274 (28.47%), Postives = 129/274 (47.08%), Query Frame = 2 Query: 56 LWNLVSP-GGALVIVEDGSAKGSHTVRSARQMVL-----SSAASGLEGATGSGHGSKVLKKVAKQAPYIVGPCRHDKECPLKSENG------EMCRFTQKV--PWNAADVVKCSVRS---VLFSYVVIRKGAPE-LKVSTSESTEPRKSSSSSV-DLLKAFRRIGQAGGRLGAAMESLGTEGISDES--LKREDWARLIRKPIKGQGHVILDLCTPDGDLQRKIESKKKWKGATGIYIAARKSQLGGLWPY--LDNVSVKSPVGEKAGDHEAEK 808 LWNL++P GG L+++E G KG V AR M+L S ++ E T S ++K +A IV PC + +CP+ G + C F Q+ P ++ R+ + FSY+ +++G ++ S + TE ++ D ++ ++ +A A E+ T E+ + R++ +P+K +GHVI DLCTP G ++R + + A Y ARKSQ G LW V+ +GEK G+ + E+ Sbjct: 525 LWNLLNPNGGVLILLEKGHQKGFEAVAGARDMLLKRFISSPGSTRYENLTDSPEEDTFIEK---EAGMIVAPCTNHNKCPMYQIPGHTKGRRDYCHFQQRYIRPAFLQRIIGAKDRNHEDLKFSYIAVQRGVDRRIEDSIIQGTEAADAAFDGYEDAVEMPKQETEASANEAVASETQPTPTEQQETGGVNFLSLPRIVYQPMKRRGHVIFDLCTPAGKIERWTVPRSFSRQA---YKDARKSQWGDLWALGAKTRVARSLRLGEKHGEGKKER 792 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13662.2252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig13662.2252.1 >prot_H-paniculata_contig13662.2252.1 ID=prot_H-paniculata_contig13662.2252.1|Name=mRNA_H-paniculata_contig13662.2252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp MLEFVAFIVSCRAAATAVLWNLVSPGGALVIVEDGSAKGSHTVRSARQMVback to top mRNA from alignment at H-paniculata_contig13662:2176..5378- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig13662.2252.1 ID=mRNA_H-paniculata_contig13662.2252.1|Name=mRNA_H-paniculata_contig13662.2252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3203bp|location=Sequence derived from alignment at H-paniculata_contig13662:2176..5378- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig13662:2176..5378- >mRNA_H-paniculata_contig13662.2252.1 ID=mRNA_H-paniculata_contig13662.2252.1|Name=mRNA_H-paniculata_contig13662.2252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig13662:2176..5378- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |