mRNA_H-paniculata_contig13662.2251.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13662.2251.1
Unique NamemRNA_H-paniculata_contig13662.2251.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13662.2251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13662contigH-paniculata_contig13662:1596..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13662.2251.1prot_H-paniculata_contig13662.2251.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13662 1752..2057 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.595235-UTR-H-paniculata_contig13662:1595..17511622929083.595235-UTR-H-paniculata_contig13662:1595..1751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13662 1596..1751 +
1691480724.8600967-UTR-H-paniculata_contig13662:1595..17511691480724.8600967-UTR-H-paniculata_contig13662:1595..1751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13662 1596..1751 +
1622929083.6246698-UTR-H-paniculata_contig13662:2057..21571622929083.6246698-UTR-H-paniculata_contig13662:2057..2157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13662 2058..2157 +
1691480724.8889995-UTR-H-paniculata_contig13662:2057..21571691480724.8889995-UTR-H-paniculata_contig13662:2057..2157Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13662 2058..2157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929083.6086428-CDS-H-paniculata_contig13662:1751..20571622929083.6086428-CDS-H-paniculata_contig13662:1751..2057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 1752..2057 +
1691480724.8764153-CDS-H-paniculata_contig13662:1751..20571691480724.8764153-CDS-H-paniculata_contig13662:1751..2057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13662 1752..2057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13662.2251.1

>prot_H-paniculata_contig13662.2251.1 ID=prot_H-paniculata_contig13662.2251.1|Name=mRNA_H-paniculata_contig13662.2251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MLSRYSIQIQRNFNPNKKVDPQSRVSPVEGGQGCWIQQELQTRSLHAPNK
PRHILLHHTGAQRVPPYLPLTNTTNTRWSNNNTCRQTFTAFCAPIHNTRY
T*
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mRNA from alignment at H-paniculata_contig13662:1596..2157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13662.2251.1 ID=mRNA_H-paniculata_contig13662.2251.1|Name=mRNA_H-paniculata_contig13662.2251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=562bp|location=Sequence derived from alignment at H-paniculata_contig13662:1596..2157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCAACTGAAGTCCGATATTCTCTTCGTGGGGCAAGAGTTTTGAAC
TCGCCAAAGAACGGGCAATACTTATTTCTCTGTTATTCACTCTGAACAAC
GAATTTGGAAACTTTTTCATACCTTGATAGGGACGGAAAATGCCTTTCGC
TAGCACATGTTGTCGAGGTATTCCATTCAAATTCAACGGAACTTCAACCC
CAACAAGAAAGTTGATCCCCAATCCCGAGTATCGCCTGTTGAAGGTGGAC
AAGGCTGCTGGATCCAACAGGAGCTCCAAACACGTTCGCTCCACGCACCA
AACAAACCTAGACACATTTTACTGCATCACACAGGGGCACAACGCGTCCC
GCCATACCTGCCGCTGACAAACACCACAAACACCCGCTGGTCCAACAACA
ACACGTGCCGTCAAACATTTACCGCCTTCTGCGCCCCCATACACAATACC
AGGTACACTTAGAGTACCTTCAATTATCACTCCGTAAATCGCGATATTTG
GCCGCTTCAGCCGTCGCAACGTTATCTCGTCTTCTCTCCGCTTTTCCCCT
TGCCGCCCCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig13662:1596..2157+

>mRNA_H-paniculata_contig13662.2251.1 ID=mRNA_H-paniculata_contig13662.2251.1|Name=mRNA_H-paniculata_contig13662.2251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig13662:1596..2157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTCGAGGTATTCCATTCAAATTCAACGGAACTTCAACCCCAACAA
GAAAGTTGATCCCCAATCCCGAGTATCGCCTGTTGAAGGTGGACAAGGCT
GCTGGATCCAACAGGAGCTCCAAACACGTTCGCTCCACGCACCAAACAAA
CCTAGACACATTTTACTGCATCACACAGGGGCACAACGCGTCCCGCCATA
CCTGCCGCTGACAAACACCACAAACACCCGCTGGTCCAACAACAACACGT
GCCGTCAAACATTTACCGCCTTCTGCGCCCCCATACACAATACCAGGTAC
ACTTAGATGTTGTCGAGGTATTCCATTCAAATTCAACGGAACTTCAACCC
CAACAAGAAAGTTGATCCCCAATCCCGAGTATCGCCTGTTGAAGGTGGAC
AAGGCTGCTGGATCCAACAGGAGCTCCAAACACGTTCGCTCCACGCACCA
AACAAACCTAGACACATTTTACTGCATCACACAGGGGCACAACGCGTCCC
GCCATACCTGCCGCTGACAAACACCACAAACACCCGCTGGTCCAACAACA
ACACGTGCCGTCAAACATTTACCGCCTTCTGCGCCCCCATACACAATACC
AGGTACACTTAG
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