mRNA_H-paniculata_contig13628.2238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13628.2238.1
Unique NamemRNA_H-paniculata_contig13628.2238.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: D8LR94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR94_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 1.520e-33
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLVS 219
            S  LYCGSICVTEFG +GP+F A+LF+ML DF++AVFRCLQ LDDFTANPDVVEEFFYL  RFVDYCP+PLV+
Sbjct:  771 SSCLYCGSICVTEFGRRGPEFTAVLFQMLSDFAQAVFRCLQTLDDFTANPDVVEEFFYLVGRFVDYCPDPLVT 843          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A7S2R2F7_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2F7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.620e-21
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLV 216
            SP LY  SIC+TE+G + PQF  LLF ML D     F  L+ +DDFTA+PDVVEEFF+L  R + YCPEPLV
Sbjct:  752 SPYLYAASICITEYG-RNPQFTQLLFGMLSDMCSVTFEFLRTIDDFTAHPDVVEEFFFLAGRMMTYCPEPLV 822          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A7R9VUB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VUB8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.370e-19
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLV 216
            SP LY  S+CV+EFG + P    LL  ML D +  VF  L+  DDFTA+PDVVEEFFYL  R + +CPEP+V
Sbjct:   42 SPYLYAASVCVSEFG-RDPTMVPLLAGMLADLAAVVFGMLRTRDDFTAHPDVVEEFFYLAGRAMSHCPEPVV 112          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A7S2EEE2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EEE2_TRICV)

HSP 1 Score: 87.4 bits (215), Expect = 2.000e-18
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLVS 219
            SP LY  SIC++E+G +      LLF+ML D S AVF  L+   DFTA+PDVVEEFF+LT R + YCPEPLV+
Sbjct:  319 SPYLYAASICISEYG-QDTSAVPLLFKMLTDMSTAVFGLLRTPGDFTAHPDVVEEFFFLTGRMMSYCPEPLVA 390          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A7S2D4C3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4C3_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.840e-17
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLV 216
            S  LY  SIC+TEFG + P   A+L++ML  FS  VFR L  LD F A+PD+VEE+F+L  RF++YCP PL+
Sbjct:  732 SAYLYSASICITEFG-ESPAHEAMLYKMLEQFSTTVFRILSCLDHFVAHPDMVEEYFFLVGRFLEYCPTPLL 802          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: B8BVT4_THAPS (Xpo1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVT4_THAPS)

HSP 1 Score: 84.7 bits (208), Expect = 1.840e-17
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLVS 219
            SP LY  SIC++E+G K P  +  +F M+ + S +VF+ L++ +DFTANPDVVEEFFY+  R V  CP PLV 
Sbjct:  860 SPYLYLASICISEYG-KNPTHSQQMFNMVANLSTSVFQALRSAEDFTANPDVVEEFFYMAGRMVSNCPGPLVQ 931          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A7S2D5U0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D5U0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.500e-16
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   22 SICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLV 216
            SIC+TEFG + P   A+L++ML  FS  VFR L  LD F A+PD+VEE+F+L  RF++YCP PL+
Sbjct:    7 SICITEFG-ESPAHEAMLYKMLEQFSTTVFRILSCLDHFVAHPDMVEEYFFLVGRFLEYCPTPLL 70          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A7S3NIA9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIA9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.060e-15
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLV 216
            S  +Y  SIC+TEFG    +   +LFEML   S  VF   ++LDDF   PDV EE+FYLT+RF+DYCP+ LV
Sbjct:  889 SSYVYASSICITEFGRDSNKHG-ILFEMLTKLSATVFCLFRSLDDFRQRPDVAEEYFYLTSRFLDYCPDHLV 959          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A7S3L1F1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1F1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.100e-15
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLV 216
            SP LY  SIC+TE+G +    A  L++M+ + +   F  ++NL DF++ PDV+EEFFYL  R + YCPEPL+
Sbjct:  164 SPYLYAASICLTEYG-RDAAMAQPLYDMVANMAETTFGFMRNLQDFSSQPDVMEEFFYLMERMLSYCPEPLI 234          
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Match: A0A8J2SEP9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEP9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.750e-14
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANPDVVEEFFYLTARFVDYCPEPLVS 219
            S  +YC SIC+TEFG +  +    LFEM+   S+A F  LQ+   F  +PD+VEE+FYL +RF+DYCP  L+S
Sbjct:  765 SSFVYCCSICITEFGDEA-RMIPKLFEMVSSVSQACFALLQSPQHFAEHPDLVEEYFYLASRFLDYCPGSLLS 836          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13628.2238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LR94_ECTSI1.520e-3378.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2R2F7_9STRA7.620e-2159.72Hypothetical protein n=2 Tax=Eucampia antarctica T... [more]
A0A7R9VUB8_9STRA5.370e-1955.56Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2EEE2_TRICV2.000e-1857.53Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2D4C3_9STRA1.840e-1754.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8BVT4_THAPS1.840e-1752.05Xpo1 domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S2D5U0_9STRA1.500e-1655.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3NIA9_9STRA1.060e-1552.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3L1F1_9STRA2.100e-1547.22Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J2SEP9_9STRA1.750e-1449.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13628contigH-paniculata_contig13628:5435..6529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.8e-28
Seed eggNOG ortholog2880.D8LR94
KEGG rclassRC00017
KEGG koko:K05288,ko:K15436
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG2081@1,KOG2081@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016
Exons2
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929078.8172255-CDS-H-paniculata_contig13628:5434..55571622929078.8172255-CDS-H-paniculata_contig13628:5434..5557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13628 5435..5557 +
1691480723.9763405-CDS-H-paniculata_contig13628:5434..55571691480723.9763405-CDS-H-paniculata_contig13628:5434..5557Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13628 5435..5557 +
1622929078.8303785-CDS-H-paniculata_contig13628:6427..65291622929078.8303785-CDS-H-paniculata_contig13628:6427..6529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13628 6428..6529 +
1691480723.987071-CDS-H-paniculata_contig13628:6427..65291691480723.987071-CDS-H-paniculata_contig13628:6427..6529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13628 6428..6529 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13628.2238.1prot_H-paniculata_contig13628.2238.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13628 5435..6529 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13628.2238.1

>prot_H-paniculata_contig13628.2238.1 ID=prot_H-paniculata_contig13628.2238.1|Name=mRNA_H-paniculata_contig13628.2238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
SPLLYCGSICVTEFGLKGPQFAALLFEMLGDFSRAVFRCLQNLDDFTANP
DVVEEFFYLTARFVDYCPEPLVSR*
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mRNA from alignment at H-paniculata_contig13628:5435..6529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13628.2238.1 ID=mRNA_H-paniculata_contig13628.2238.1|Name=mRNA_H-paniculata_contig13628.2238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1095bp|location=Sequence derived from alignment at H-paniculata_contig13628:5435..6529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCGCTGCTGTATTGTGGCTCGATTTGCGTCACGGAGTTCGGGCTCAA GGGACCGCAATTTGCGGCACTCCTGTTCGAGATGTTGGGGGACTTCTCTA GGGCTGTGTTCCGGTGCCTTCAGGTGAGGGGAAGCCCAATATATGCGAGT TATTTAGGGGGCTTGTTCTAGTAAATGAGGCTCTCTCGCTCTCTCTATTT TCTGTGGTGAACTTCTTTTGCGTGAAACATGGTCTTAATTTTAGCCGAAG TCCGCGTTGCCCGCAACCCTCGCGAATGGTCGACCATGGGTGCATGTGCC GCCAGCTCGTTTGGAGAGAGGGGGGCGGGCGGTCAGGCTATAACGCAGGT CTCCCGGATCCTAGGTCAAGTAAGTGGACAGAATATAACGAACTGATTCA TGTGAGGCGACCTTGCATATACACCAGAGTCAGGGTGTTGGTTCACCAAA TATGTCATACTCCAATGGATGTATAAACCTTTGGCTTGCGTCGTAATGCT GATTATCTCAAGTTGTATACTGCCACATTAGACCACCTTGAAACTACCCG TAAGTACTGCAGTGAACAGCACGCAGCGCGTCATGTCCATGTCCACGGAA GACCCCCATGTCTCGACGTTCTCGTGTGCGGGAAGCTATGCGCGTTTGTA CGAAACGTGCCTCCGACAATCGCATGTACTGGTGCGTTTTGACCCTGTCT CCTCCCGGGTTGTGCACACCTCTCGACTCGACATCCTTGGGGGCACCTAG CGCATTAAAACGACGGTACCACGGCACCTCGTGGACTGTGCAGACAAATG TGTACACTTTCTCCCGCGAAGGTTGCTTTTCCCCCGTATTTGAAAAATAA AATGAAATGTTGCAACATGTAACAGCAACAGGTTTGGGTTTGTTTATTTC TTCAAACTGCATAGCTAATACAGGCGTTTGTTGGAAATGTAATGCATGAC AATTTGTTTGCATGAATCATGATCTATTTGCTGCGCGTTACAGAATTTGG ACGACTTCACGGCCAACCCGGATGTGGTGGAAGAGTTTTTCTATCTGACG GCGCGCTTCGTCGACTATTGCCCAGAACCTCTCGTTTCCAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig13628:5435..6529+

>mRNA_H-paniculata_contig13628.2238.1 ID=mRNA_H-paniculata_contig13628.2238.1|Name=mRNA_H-paniculata_contig13628.2238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig13628:5435..6529+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCGCTGCTGTATTGTGGCTCGATTTGCGTCACGGAGTTCGGGCTCAA
GGGACCGCAATTTGCGGCACTCCTGTTCGAGATGTTGGGGGACTTCTCTA
GGGCTGTGTTCCGGTGCCTTCAGTCGCCGCTGCTGTATTGTGGCTCGATT
TGCGTCACGGAGTTCGGGCTCAAGGGACCGCAATTTGCGGCACTCCTGTT
CGAGATGTTGGGGGACTTCTCTAGGGCTGTGTTCCGGTGCCTTCAGAATT
TGGACGACTTCACGGCCAACCCGGATGTGGTGGAAGAGTTTTTCTATCTG
ACGGCGCGCTTCGTCGACTATTGCCCAGAACCTCTCGTTTCCAGGTGAAA
TTTGGACGACTTCACGGCCAACCCGGATGTGGTGGAAGAGTTTTTCTATC
TGACGGCGCGCTTCGTCGACTATTGCCCAGAACCTCTCGTTTCCAGGTGA
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