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Homology
BLAST of mRNA_H-paniculata_contig136.2222.1 vs. uniprot
Match: D8LMJ3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ3_ECTSI) HSP 1 Score: 114 bits (284), Expect = 5.100e-25 Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 1 TKQRLKYHQGKQRFQAGRSIFSSTRVQEAVNEEWIKGGHRRRAMRMLLLFLAYMTVFTASSVLNSGRNEPHGFHLSMSVRTVLETGSELW 270
+QRL Y Q KQR+ AGRSIFSS RVQEAV+EEWI+GGHR RA+R+LLL+L Y+ VFT SVLNSGRN PHG+HL++ S+ W
Sbjct: 486 ARQRLVYQQSKQRYHAGRSIFSSARVQEAVHEEWIQGGHRIRALRVLLLYLVYLVVFTLCSVLNSGRNMPHGYHLTIWYEGDTLVNSQGW 575
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 204.1 |
| Seed ortholog evalue | 7.4e-50 |
| Seed eggNOG ortholog | 2880.D8LMJ3 |
| KEGG rclass | RC00002,RC00017 |
| KEGG ko | ko:K00901,ko:K21413,ko:K21952 |
| KEGG Reaction | R02240 |
| KEGG Pathway | ko00561,ko00564,ko01100,ko01110,ko04070,ko04072,ko05231,map00561,map00564,map01100,map01110,map04070,map04072,map05231 |
| Hectar predicted targeting category | signal anchor |
| GOs | GO:0003674,GO:0005488,GO:0005515 |
| EggNOG free text desc. | Ankyrin repeat and sterile alpha motif |
| EggNOG OGs | COG0666@1,KOG0507@2759,KOG3599@1,KOG3599@2759 |
| EC | 2.7.1.107 |
| COG Functional cat. | BQ |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko04131 |
| Exons | 6 |
| Model size | 753 |
| Cds size | 753 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig136.2222.1 >prot_H-paniculata_contig136.2222.1 ID=prot_H-paniculata_contig136.2222.1|Name=mRNA_H-paniculata_contig136.2222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp
TKQRLKYHQGKQRFQAGRSIFSSTRVQEAVNEEWIKGGHRRRAMRMLLLF
LAYMTVFTASSVLNSGRNEPHGFHLSMSVRTVLETGSELWEDDSTSVGPV
HIAENIWEWLEGPVLDILADNQNSSWYDKDILVDASGWKRLRVLGGARLS
QWRTRDSSCKVSGPIGDMYGNYCFTDYCGEDSNGRAICSGASSDTRSFGP
GRKYRYEQNAHTHTTTGSFGVYGRGAFVEYLTQGNTTLAIDEIRALEVLV
* back to topmRNA from alignment at H-paniculata_contig136:11110..14237- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig136.2222.1 ID=mRNA_H-paniculata_contig136.2222.1|Name=mRNA_H-paniculata_contig136.2222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3128bp|location=Sequence derived from alignment at H-paniculata_contig136:11110..14237- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAAGCAGCGCCTCAAGTATCATCAGGGCAAGCAGCGATTTCAGGCCGG
TCGAAGTATATTCTCGTCGACGAGGGTGCAAGAGGTACGCGATCACAAAT
TCCCGTCCCGGTGTCGTGTTCGTACCAAAACGTGATTATGCGTGCCCGTT
CCCAACAAAGCTCCACAAGCTGGGGAACGCTAAGGTTGTTCAGTAGAATC
GAACATTGGCACATCGTAAAAGCAATCATTATTAGATTCTCACGTTGAAA
GTCCTGGTTGCCCACCACCAAGGTGTTGCCAAGTGTAGTCGCTGGTTGTT
TTTAGTCAAAGACCATTCCACGCGTCGCTACGTTGATTCACCGTGGTCGG
CTTGCTAGGGGCGCTGATCGCGTGGTTGGGCCTGTATTCACGGTGTGTGA
AGCTTTACTCGTTTTCAAAGAGAGCTTGACGGAGTCCACTTGACTGCTGC
TTCGGAAATGCTCCATGTTTCATAGATGCTAGGCGATTTGTTCATTCTTC
GGACAGGCAGTAAACGAGGAGTGGATCAAAGGTGGCCACAGGCGTCGAGC
AATGCGCATGCTTTTGCTGTTCCTGGCGTACATGACTGTCTTTACTGCGT
CTTCGGTGCTCAATTCGGGAAGGAACGAGCCCCATGGCTTTCACCTCAGC
ATGTACGATAATCCGGCGCTACCACGCAATCATCGCATGTCATTCAGCCA
GGTGGCACGATCATCCGTTACATGTATATTCGTCGGATTAGGTGGATCCC
AGGAATGTACCGCTTAGTAGTGCCCACCACCCCGAACGACTCGACAACAC
GAAAAGTACTTTGCACTACTACGTTGGAATTCAGAGTGTCGCAACTCGGG
TCCGAGCATGACTGCACCTCCAAGGTCTTCGCCCAGTAGAGACAAGGCGT
TGCCTCACCTCGAGGTATTGTTCGGGCCATTAGTTTGGACAGATGCGCCG
CGGGTATGCGAGTAGTTACCGTGACTTCCAGAGAGAGAACCCTTGTGGCG
ACTCCAAGGGGCGGTAAGAACTTGCACCGATGATACTTCAATATCTAACA
CACGGCGCTATGTTTTTTCTTGAACCCCTAGGTCCGTGCGAACGGTTTTA
GAGACTGGTTCGGAGCTCTGGGAGGATGATTCAACCTCTGTTGGGCCTGT
CCATATCGCGGAAAACATCTGGGAGTGGCTGGAAGGGCCTGTACTGGACA
TCCTGGCCGATAATCAAAACTCCAGGTGTACGTCCCGTTTGAGTCCCCCT
GGTTCGTTCAAGGGTTACGTTGTTCTTAGCGTGTCGGCACGTCTGACACA
ATAACAGTACCAACGTACTGCTCGTCACACTCAAGTTCATCGGGCGACGG
AGCATCAGAACAATTGACAAAAGTATTATGTGCGACACAATCTTATGTCG
AACGATATGTCAACATGCAGCGGAGTTGAAAAAATCATTGATCACAGCGT
TATACTCTAGTACACTTTTACGTAATGACCACAACCCACGCCTGCTTTCC
CAACCCTGCACTCGGAGTGTTTAAACACTTGCATTGGTCACTCCCACAAA
CTAAATCGATCAGTGCGCACAAAATACGGCATGCCACGGCTGGCACTGAA
GATAAGACCGCCGGGATGTAAACATGCCCTACACGATCTCCTTATACGCG
AACAACTGTCCGCTGGTCGACCCTCGAAGCTAAACAACCACGTCTGTTTC
ACGTTTTTCTGGGTCGCCGACCTGGCTGGACGTTGGTAGCTGGTACGACA
AGGATATACTGGTCGATGCAAGCGGATGGAAAAGGCTGCGTGTTCTCGGA
GGCGCCAGACTAAGTCAGTGGCGCACGAGGGATAGTTCTTGCAAGGTACC
CTTGAAAAGCGATGGCGCCGTCAGCGCGTTTTCGAATGTGTTTCACAGTC
TCTTCTGAATGTGAAACTAAACTAGTCACCCCCATACCGCTCTTCTATTG
AGGTATCACAATAACAACCACAAAGCTAAACAGCCAATGCTAACTGCTTT
ACTCGGCGGTTGGTGTTGTGACAACTTAGCATCTCCTTCCATGACATATA
TAAAAAGTACAGTACCATGGTCCTTAGCTATAGACGCCCCAGTAGAGTCA
CGGCAACTTCCAACACGTATTCAAGTCCAGCTTTATCAAGATATTTCTTT
TACGAAAAGGGTAACTCAGTCGATAGTGCTACACATGGTTGACGTAAAGT
ATTTCAAGGAATCCAAACCAAAAGTTCGTTTTGTGATCGTAGTTCATCCC
GAAGAGCTTCAACTTAACGACCCAGACTGGTGGGACAGAGGGAGTATGAT
ATTTTATGGAAACGTGAAAGCCTCACCATTGAATGACAGAGGTTCTATGT
GACTTGCCATAATAGAATGTTTGGCCAAGCGCTCGACGTAGGATAGGGTG
ATTTCCAATACTCCGGAAGATCCCCTTACCTCCTAAATACGATATTGAGA
CGACTACGAGACAACAGTTCACCAAGGCTGCGGATTATTGTCTCAGGTGT
CAGGGCCGATCGGTGACATGTATGGCAACTATTGCTTCACGGATTACTGC
GGGGAGGACTCAAACGGCAGAGCAATTTGCAGCGGCGCCAGCAGTGACAC
TCGGTCTTTTGGCCCAGGCAGAAAGTAAGGGACAGATGACAAACAATACC
GTGGAAAATATCTGGACCAGGGTAGTCGCGCAGAAAATGACACTTGATGC
TCTTCTGGTAACAGTAGAAATCCTGGTTTGGGGTGTGAATTAAGCTGATC
AAGCGCTTTGATTGGATCGGACTCATGGGTGCGAGTGGACCACAGTAGGT
GAAATAGATGGCATGAGCATGTCTGTCTGAAGTGCTGCCTGATCCCCTCA
AGTTCAAGGCAGCCCCTTGTCGACTTCAGAGTCCTATTACGGCTTAATCT
CGAAGCTCATCTCTAGGGCGCATTTCACCCCACGCTTTGAGGATATTTCA
TTGTCGCGCTTCGTCCTTGACGCTGCTGCCCAGATATCGGTACGAGCAAA
ATGCTCACACCCACACCACCACGGGGTCGTTTGGCGTTTACGGGAGGGGG
GCGTTTGTGGAATACCTGACTCAAGGGAATACGACCCTCGCGATCGACGA
AATCAGAGCTCTGGAGGTATTGGTCTAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig136:11110..14237- >mRNA_H-paniculata_contig136.2222.1 ID=mRNA_H-paniculata_contig136.2222.1|Name=mRNA_H-paniculata_contig136.2222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig136:11110..14237- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAAGCAGCGCCTCAAGTATCATCAGGGCAAGCAGCGATTTCAGGCCGG
TCGAAGTATATTCTCGTCGACGAGGGTGCAAGAGACTAAGCAGCGCCTCA
AGTATCATCAGGGCAAGCAGCGATTTCAGGCCGGTCGAAGTATATTCTCG
TCGACGAGGGTGCAAGAGGCAGTAAACGAGGAGTGGATCAAAGGTGGCCA
CAGGCGTCGAGCAATGCGCATGCTTTTGCTGTTCCTGGCGTACATGACTG
TCTTTACTGCGTCTTCGGTGCTCAATTCGGGAAGGAACGAGCCCCATGGC
TTTCACCTCAGCATGCAGTAAACGAGGAGTGGATCAAAGGTGGCCACAGG
CGTCGAGCAATGCGCATGCTTTTGCTGTTCCTGGCGTACATGACTGTCTT
TACTGCGTCTTCGGTGCTCAATTCGGGAAGGAACGAGCCCCATGGCTTTC
ACCTCAGCATGTCCGTGCGAACGGTTTTAGAGACTGGTTCGGAGCTCTGG
GAGGATGATTCAACCTCTGTTGGGCCTGTCCATATCGCGGAAAACATCTG
GGAGTGGCTGGAAGGGCCTGTACTGGACATCCTGGCCGATAATCAAAACT
CCAGGTCCGTGCGAACGGTTTTAGAGACTGGTTCGGAGCTCTGGGAGGAT
GATTCAACCTCTGTTGGGCCTGTCCATATCGCGGAAAACATCTGGGAGTG
GCTGGAAGGGCCTGTACTGGACATCCTGGCCGATAATCAAAACTCCAGCT
GGTACGACAAGGATATACTGGTCGATGCAAGCGGATGGAAAAGGCTGCGT
GTTCTCGGAGGCGCCAGACTAAGTCAGTGGCGCACGAGGGATAGTTCTTG
CAAGCTGGTACGACAAGGATATACTGGTCGATGCAAGCGGATGGAAAAGG
CTGCGTGTTCTCGGAGGCGCCAGACTAAGTCAGTGGCGCACGAGGGATAG
TTCTTGCAAGGTGTCAGGGCCGATCGGTGACATGTATGGCAACTATTGCT
TCACGGATTACTGCGGGGAGGACTCAAACGGCAGAGCAATTTGCAGCGGC
GCCAGCAGTGACACTCGGTCTTTTGGCCCAGGCAGAAAGTGTCAGGGCCG
ATCGGTGACATGTATGGCAACTATTGCTTCACGGATTACTGCGGGGAGGA
CTCAAACGGCAGAGCAATTTGCAGCGGCGCCAGCAGTGACACTCGGTCTT
TTGGCCCAGGCAGAAAATATCGGTACGAGCAAAATGCTCACACCCACACC
ACCACGGGGTCGTTTGGCGTTTACGGGAGGGGGGCGTTTGTGGAATACCT
GACTCAAGGGAATACGACCCTCGCGATCGACGAAATCAGAGCTCTGGAGG
TATTGGTCTAGATATCGGTACGAGCAAAATGCTCACACCCACACCACCAC
GGGGTCGTTTGGCGTTTACGGGAGGGGGGCGTTTGTGGAATACCTGACTC
AAGGGAATACGACCCTCGCGATCGACGAAATCAGAGCTCTGGAGGTATTG
GTCTAG back to top
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