mRNA_H-paniculata_contig1358.2211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1358.2211.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE) HSP 1 Score: 242 bits (617), Expect = 8.010e-65 Identity = 199/471 (42.25%), Postives = 239/471 (50.74%), Query Frame = 1
Query: 496 IIGEDERLALAQGDVCKALALLEQQQRLNQPDNKQIAVKTTRITTATIPSPVPSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLNAAHARLIVLLWRAGFEREAMDTFNLARSRAREAA---------------------------------------------------AVAAYSDSGRRTPL--KPGAGIPGFSLDLPADVCHAIMRAEFREKDWQGVIEAMRASSVVPRRRGRHYKTVAASLVRESEGVRDEKESMVGDVVWGVAKSESDEGGSGWAPTEETYAIALEACGQVSKRWGFKAALFLIQEMRDANLEISLEHFRGTIMACSHTRRLAAVLPLLDEMRTRGVAADTNTYNAAMLSCTVPQMN--------------------------------------------KALNLLQVMKAEGSAPTEKSYDILLRLCGLGGCWAMGLE 1617
++ +D R ALAQGDV +AL LLE D+ V+TT PSS A XXXXXXXXXXXXXXXXXXXXX S AAHARLI LLW+AG EREA++TF+LA +RAREA A++A RRT + G G+PG L+L D CH IMR + +D+ GVIE MRASS VP R VA + R +GG GWAPTEETY +ALEACG+V KRWGFKAALFLIQEMR+ANLEISL H+RG + AC+ TR+L+ VLPLLDEMR RGVAAD TY+AA+ SCT + +AL L+Q+M++EG APT +Y++LLRLCGLGGCWA GLE
Sbjct: 57 VLSDDARDALAQGDVFRALLLLE--------DDPACNVETTE---------APSSTATATIIDXXXXXXXXXXXXXXXXXXXXXAGIGP---------SPRAAHARLIQLLWKAGHEREALETFDLAAARAREAXXXXXXXXXXXXXXXXXXXXXXXXXXARPFPNGEQQAAXXXXXXXXXXXXXXALSATQQL-RRTAAAARHGTGVPGLYLELDPDTCHGIMRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAVAKQVGR-------------------------GDGGVGWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLE 475
BLAST of mRNA_H-paniculata_contig1358.2211.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI) HSP 1 Score: 194 bits (494), Expect = 1.500e-47 Identity = 108/204 (52.94%), Postives = 131/204 (64.22%), Query Frame = 1
Query: 1006 MRAEFREKDWQGVIEAMRASSVVPRRRGRHYKTVAASLVRESEGVRDEKESMVGDVVWGVAKSESDEGGSGWAPTEETYAIALEACGQVSKRWGFKAALFLIQEMRDANLEISLEHFRGTIMACSHTRRLAAVLPLLDEMRTRGVAADTNTYNAAMLSCTVPQMNKALNLLQVMKAEGSAPTEKSYDILLRLCGLGGCWAMGLE 1617
MR + +D+ GVIEAMRASS P R AA++ ++ G D GG GWAPTEETY +ALEACG+V KRWGFKA LFLIQEMRD NLEISL H+RG + AC+ TR+L+ VLPLLDEMR RGVAAD + +AL L+Q+M++EG APT +Y++LLRLCGLGGCWA GLE
Sbjct: 1 MRRKLEAQDYLGVIEAMRASSRAPPR----LSGGAAAVAKQEVGRGD--------------------GGVGWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADV--------------VKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLE 166 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1358.2211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1358.2211.1 >prot_H-paniculata_contig1358.2211.1 ID=prot_H-paniculata_contig1358.2211.1|Name=mRNA_H-paniculata_contig1358.2211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1013bp MSRPRSLTAAVVVVTGPLVLLNKTCVATIPTTWQIRTNDQAMMRVVADSCback to top mRNA from alignment at H-paniculata_contig1358:223..21697- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1358.2211.1 ID=mRNA_H-paniculata_contig1358.2211.1|Name=mRNA_H-paniculata_contig1358.2211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=21475bp|location=Sequence derived from alignment at H-paniculata_contig1358:223..21697- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1358:223..21697- >mRNA_H-paniculata_contig1358.2211.1 ID=mRNA_H-paniculata_contig1358.2211.1|Name=mRNA_H-paniculata_contig1358.2211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6078bp|location=Sequence derived from alignment at H-paniculata_contig1358:223..21697- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |