mRNA_H-paniculata_contig13577.2209.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13577.2209.1
Unique NamemRNA_H-paniculata_contig13577.2209.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13577.2209.1 vs. uniprot
Match: A0A6H5LE02_9PHAE (DUF3668 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE02_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 5.690e-7
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:  159 VERERSDKNKALLEKEEYRAHIHKLARALKRHQ 257
            +ERERS KNKALLEKEEYRA+IHKLARAL+RHQ
Sbjct:  828 IERERSLKNKALLEKEEYRANIHKLARALRRHQ 860
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BLAST of mRNA_H-paniculata_contig13577.2209.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.740e-6
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 3 
Query:  159 VERERSDKNKALLEKEEYRAHIHKLARALKRHQ 257
            +ERERS KNKALLEKEEYRA+IHKLARAL+ HQ
Sbjct: 1185 IERERSLKNKALLEKEEYRANIHKLARALRHHQ 1217
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13577.2209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LE02_9PHAE5.690e-787.88DUF3668 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FXH9_ECTSI2.740e-684.85Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13577contigH-paniculata_contig13577:6129..6818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929074.1195219-CDS-H-paniculata_contig13577:6128..61891622929074.1195219-CDS-H-paniculata_contig13577:6128..6189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 6129..6189 +
1691480721.6448865-CDS-H-paniculata_contig13577:6128..61891691480721.6448865-CDS-H-paniculata_contig13577:6128..6189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 6129..6189 +
1622929074.129581-CDS-H-paniculata_contig13577:6618..68181622929074.129581-CDS-H-paniculata_contig13577:6618..6818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 6619..6818 +
1691480721.6532547-CDS-H-paniculata_contig13577:6618..68181691480721.6532547-CDS-H-paniculata_contig13577:6618..6818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13577 6619..6818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13577.2209.1prot_H-paniculata_contig13577.2209.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13577 6129..6818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13577.2209.1

>prot_H-paniculata_contig13577.2209.1 ID=prot_H-paniculata_contig13577.2209.1|Name=mRNA_H-paniculata_contig13577.2209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
GRITARIVSIGSGQSGGGGPARMPVVQQLPSFRSTYLINSLRTETHHFVY
FGKLSARGAIKTKRSWRRRSTERTSTSWQGRSRGTR*
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mRNA from alignment at H-paniculata_contig13577:6129..6818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13577.2209.1 ID=mRNA_H-paniculata_contig13577.2209.1|Name=mRNA_H-paniculata_contig13577.2209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=690bp|location=Sequence derived from alignment at H-paniculata_contig13577:6129..6818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGATTACGGCAAGAATTGTTTCGATTGGGAGCGGCCAAAGCGGAGG
CGGAGGCCCAGGTGACGGTTCGCGTGTAGTTGACTCTCTTATCGTGGCCA
CTAGCTGTGGTCGAGCGTGCGAGTATTGGAACTTGATGGATTCCATTAAA
TGGTTGCTACGGTGGCTTGTTCAATCGTTATGTACAAAACTGTATCCCGA
TGCCGAATGATCTCCGTATTTGCATTGTGACGATTTCGCGGTGGACGACG
TTCCTGATAAGATCGACCGTGTCATGTAAGAAAGTGAGACTCAAGCTGAT
GCAGCCTGAAATGTGACGTTCCTCGGGGTGCAGCTAGAAGCCACAGGTAG
TGTCGACTTGGTATATACTTGGTATGTACTTGGTATGTACCCATTCGCAA
AGCTTGACCACCTCGCAAGTTTTTGAACCTTAGTTTTGTGCCGATATGAT
TTACTGCACTTTCTGTTGTACACCATTTTGTCATGTGAAGCACGTATGCC
GGTGGTTCAACAGCTGCCCTCGTTCCGAAGCACATATCTAATAAACAGCT
TACGCACAGAAACCCATCATTTTGTATATTTTGGTAAGTTGAGCGCGAGA
GGAGCGATAAAAACAAAGCGCTCTTGGAGAAGGAGGAGTACCGAGCGCAC
ATCCACAAGCTGGCAAGGGCGCTCAAGAGGCACCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig13577:6129..6818+

>mRNA_H-paniculata_contig13577.2209.1 ID=mRNA_H-paniculata_contig13577.2209.1|Name=mRNA_H-paniculata_contig13577.2209.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig13577:6129..6818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGGATTACGGCAAGAATTGTTTCGATTGGGAGCGGCCAAAGCGGAGG
CGGAGGCCCAGGGGAGGATTACGGCAAGAATTGTTTCGATTGGGAGCGGC
CAAAGCGGAGGCGGAGGCCCAGCACGTATGCCGGTGGTTCAACAGCTGCC
CTCGTTCCGAAGCACATATCTAATAAACAGCTTACGCACAGAAACCCATC
ATTTTGTATATTTTGGTAAGTTGAGCGCGAGAGGAGCGATAAAAACAAAG
CGCTCTTGGAGAAGGAGGAGTACCGAGCGCACATCCACAAGCTGGCAAGG
GCGCTCAAGAGGCACCAGGTAACACGTATGCCGGTGGTTCAACAGCTGCC
CTCGTTCCGAAGCACATATCTAATAAACAGCTTACGCACAGAAACCCATC
ATTTTGTATATTTTGGTAAGTTGAGCGCGAGAGGAGCGATAAAAACAAAG
CGCTCTTGGAGAAGGAGGAGTACCGAGCGCACATCCACAAGCTGGCAAGG
GCGCTCAAGAGGCACCAGGTAA
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