mRNA_H-paniculata_contig13574.2207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13574.2207.1
Unique NamemRNA_H-paniculata_contig13574.2207.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13574.2207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13574contigH-paniculata_contig13574:2905..4394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size409
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929073.7711096-CDS-H-paniculata_contig13574:2904..30181622929073.7711096-CDS-H-paniculata_contig13574:2904..3018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13574 2905..3018 +
1691480721.602226-CDS-H-paniculata_contig13574:2904..30181691480721.602226-CDS-H-paniculata_contig13574:2904..3018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13574 2905..3018 +
1622929073.7863035-CDS-H-paniculata_contig13574:4101..43921622929073.7863035-CDS-H-paniculata_contig13574:4101..4392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13574 4102..4392 +
1691480721.6130807-CDS-H-paniculata_contig13574:4101..43921691480721.6130807-CDS-H-paniculata_contig13574:4101..4392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13574 4102..4392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13574.2207.1prot_H-paniculata_contig13574.2207.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13574 2905..4392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13574.2207.1

>prot_H-paniculata_contig13574.2207.1 ID=prot_H-paniculata_contig13574.2207.1|Name=mRNA_H-paniculata_contig13574.2207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
TLEFAKNAHDLRDEVQLGMMGRCFEIVALLLVSLGGGQGFMPSISSSSSS
SFCQASGTNSARYFGGKQEEHGALARKPSARRPRPTRSEQLRVLRPDPTR
TRTELQAASPNPPAEKTPPFSPANFFMSLFGGVTT
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mRNA from alignment at H-paniculata_contig13574:2905..4394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13574.2207.1 ID=mRNA_H-paniculata_contig13574.2207.1|Name=mRNA_H-paniculata_contig13574.2207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1490bp|location=Sequence derived from alignment at H-paniculata_contig13574:2905..4394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTAGAATTCGCGAAAAATGCTCATGATCTTCGAGATGAAGTTCAGTT
GGGAATGATGGGGCGCTGCTTCGAGATCGTGGCGCTGCTCCTAGTCTCGT
TAGGTGGAGGTCAGGTAATTATTGTTCACTAGGAATCAGTGGCTAAATTT
GACGCGTAAGACATGTGTAGACGTGCCAGACACCTACGAATTGATATGTC
AGTTGCGCTCTACACCTGTAACCGTTTCATCATTAACGTTTCACCGTCAA
TGATGATAACGTATTACAGAAGCTAGTAGCTCTGATGTACCTACTGTAGA
ACCCACGAACGTCCTGCATGATATTGCACTATTTGTATGGTATAGTTCTA
TTCTCTACTATCTCGTACTACTATCTGTTGAATACGTAATGCGTGGGGTT
GAAAGTTAAACGAGATGAGATGTTGCGAAAGATTTGAATTAGGATGACAG
TCTATGGATCTCTCGTGTTTGCTTATGGTTTTGTGTGAACACGAAATACT
ACTGAGAACGTATATTGCTGTTAGCTATTAGAGCCACGGATAAGCTCACG
CCGTCGGAGCAATCCATTTGTTCCATACTGAATAATTCTGCACCTATGAT
CCATGCACAACGACGTCTCGCTTTGTAGGCACAACAACAGTTTTTTAAAG
AAGATTCGTTTTCAGCCATTTACTTCAGGAAAGTATTGAAAAATGTTCCG
AAATTAACGTTATCACGACGTTAACCTTAACCCTTTGAAGTTTACTGTCT
TTGGGGTGGATCTTTGCAGCAAAAATCATCCTATATGATAATTAAGTATA
TAAAGCAATTAATCATAGATAAGAACCACAAATCTATGATGACCAAGATG
GCGCGCGTACTTACTTAAAGAAAATACACATACCTGGTACACCGTCCAGT
TGAATGTCTGATAAAATCAAAATTACAGCTAAACTTCAAGTATCGTTGCT
ATCTATTGAACCTGTACTTGAAATGTGTATATTTATAATAAACAATATTT
TCTTTACTCTTGTGTAATTTTTTTACCCATATTTTTGTGTGTCAGACACC
ATTTTGAAACCTGTTGAAAATATGGGAAAAATGCATGTTATACGGCAAGA
GCCTTCATCATACGAATCCATCAGTTCTAACCAGCTATTGCGTACCCGCC
GTGATCTTACCCGACCCCCTACCCGACCCTACCCTACCCTTCCCCAGGGC
TTCATGCCCTCGATCTCCTCCTCCTCCTCCTCCTCCTTTTGCCAAGCCAG
CGGGACCAACAGCGCTCGTTATTTTGGCGGCAAGCAGGAAGAGCATGGTG
CCTTGGCAAGAAAACCCAGCGCCCGCCGCCCGCGCCCAACGAGGAGCGAA
CAGCTACGTGTGCTGCGGCCGGATCCGACAAGGACACGAACCGAGCTGCA
AGCTGCCAGTCCCAACCCCCCCGCCGAAAAAACGCCTCCCTTTTCGCCTG
CTAATTTCTTCATGAGCTTGTTTGGGGGCGTAACTACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13574:2905..4394+

>mRNA_H-paniculata_contig13574.2207.1 ID=mRNA_H-paniculata_contig13574.2207.1|Name=mRNA_H-paniculata_contig13574.2207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig13574:2905..4394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTAGAATTCGCGAAAAATGCTCATGATCTTCGAGATGAAGTTCAGTT
GGGAATGATGGGGCGCTGCTTCGAGATCGTGGCGCTGCTCCTAGTCTCGT
TAGGTGGAGGTCAGACTTTAGAATTCGCGAAAAATGCTCATGATCTTCGA
GATGAAGTTCAGTTGGGAATGATGGGGCGCTGCTTCGAGATCGTGGCGCT
GCTCCTAGTCTCGTTAGGTGGAGGTCAGGGCTTCATGCCCTCGATCTCCT
CCTCCTCCTCCTCCTCCTTTTGCCAAGCCAGCGGGACCAACAGCGCTCGT
TATTTTGGCGGCAAGCAGGAAGAGCATGGTGCCTTGGCAAGAAAACCCAG
CGCCCGCCGCCCGCGCCCAACGAGGAGCGAACAGCTACGTGTGCTGCGGC
CGGATCCGACAAGGACACGAACCGAGCTGCAAGCTGCCAGTCCCAACCCC
CCCGCCGAAAAAACGCCTCCCTTTTCGCCTGCTAATTTCTTCATGAGCTT
GTTTGGGGGCGTAACTACAGGCTTCATGCCCTCGATCTCCTCCTCCTCCT
CCTCCTCCTTTTGCCAAGCCAGCGGGACCAACAGCGCTCGTTATTTTGGC
GGCAAGCAGGAAGAGCATGGTGCCTTGGCAAGAAAACCCAGCGCCCGCCG
CCCGCGCCCAACGAGGAGCGAACAGCTACGTGTGCTGCGGCCGGATCCGA
CAAGGACACGAACCGAGCTGCAAGCTGCCAGTCCCAACCCCCCCGCCGAA
AAAACGCCTCCCTTTTCGCCTGCTAATTTCTTCATGAGCTTGTTTGGGGG
CGTAACTACA
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