mRNA_H-paniculata_contig13473.2160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13473.2160.1
Unique NamemRNA_H-paniculata_contig13473.2160.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: D8LTL4_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL4_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 2.090e-98
Identity = 146/196 (74.49%), Postives = 163/196 (83.16%), Query Frame = 1 
Query:    1 KSLAHYSVACWQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG 588
            KS   + V   QC VAT+LVE VRR GYA YDPFNF+TARRWLPVS+CFS MLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFF Q A+ +V++SMAVMVFGAL ASY+D+ F+ WGYFWMVANCC TAGYVLYMK AT++IKLP+FGMVFYNNLLTTCLL PAA+ +GDF  F   P L T TY +  LFSG
Sbjct:   52 KSDMAFLVVVGQCLVATILVEAVRRMGYASYDPFNFSTARRWLPVSICFSAMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFQQAASWLVMFSMAVMVFGALFASYNDLDFNPWGYFWMVANCCTTAGYVLYMKHATKSIKLPRFGMVFYNNLLTTCLLTPAAFMMGDFTIFWTTPQLRTVTYMTALLFSG 247
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A6H5L2R8_9PHAE (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2R8_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.290e-64
Identity = 108/200 (54.00%), Postives = 138/200 (69.00%), Query Frame = 1 
Query:   13 HYSVACWQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGD--------FENFQKYPALHTKTYTSINLFSG 588
            H+    +QC +A +LVE  R  G  QY+PFN ATA RW P+++ F TML +SF +++ M VPMVTVFK+LTN++IV GD+++  Q ATP+V+ S+AVM  GA++AS+ DI F AWGYFWM ANC ATA YVL MKFAT+T+KLPKFGMVFYNNLL   ++LP A   G+           F     LHT TY  INL +G
Sbjct:  113 HFLPMAFQCFIAVLLVEASRMKGLVQYEPFNMATAMRWFPIAIFFCTMLLSSFLSMQYMGVPMVTVFKSLTNLIIVAGDYFWHSQVATPLVLLSLAVMTGGAILASWSDIEFSAWGYFWMSANCFATASYVLTMKFATRTMKLPKFGMVFYNNLLGCLIMLPLAVCFGEVFTLESTSLVGFLDRADLHTPTYLGINLGAG 312
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A7S2F6H1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F6H1_9STRA)

HSP 1 Score: 188 bits (478), Expect = 9.170e-56
Identity = 95/192 (49.48%), Postives = 127/192 (66.15%), Query Frame = 1 
Query:   13 HYSVACWQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG 588
            ++ +  +Q  +A V VE  +  G+  Y  FNF TA++W+PV+V F  MLFT   +L+  +VPMVTVFKN+TNI++  GD++FF+ P+  +V  +  +M+ GA+ A+ +D      G FWMV NCCATAGYVLYMKFAT+TIKL KFGMVFYNNLL T LLLP     G+   F    A+HT  Y   N F+G
Sbjct:   72 NFLLVVFQSIIAVVAVEFSKLMGWVTYPNFNFDTAKQWMPVNVFFCAMLFTGMASLQHNSVPMVTVFKNITNILVAAGDFYFFNSPSEFLVKAAFGIMLLGAVFAAKNDASVSFVGLFWMVMNCCATAGYVLYMKFATKTIKLSKFGMVFYNNLLCTILLLPVTILNGELALFANTTAIHTMGYGMKNAFAG 263
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A1Z5JIF2_FISSO (GDP-mannose transporter n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIF2_FISSO)

HSP 1 Score: 183 bits (465), Expect = 1.650e-53
Identity = 95/186 (51.08%), Postives = 118/186 (63.44%), Query Frame = 1 
Query:   31 WQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG 588
            +Q  +A V VE+ R   + QY P N+ TAR W PV+V F  MLFT   +LE  +VPMVTVFKN+TNI+   GD+ FF      + + + AVM  GA+ A+ +DIH  A G FWMVANC AT+ YVLYMKFATQ IKL KFGMVF NN+L   LLLP A+  G+   F     +HT  Y   N F+G
Sbjct:   93 FQAIIAAVSVEVCRMMHWVQYPPLNWETARAWAPVNVFFCLMLFTGMVSLETNSVPMVTVFKNVTNIITTAGDYIFFGSQPEGLAMAAFAVMFLGAVAAAQNDIHVTATGLFWMVANCLATSSYVLYMKFATQNIKLSKFGMVFVNNVLCVALLLPVAFLNGELATFLNAEQVHTWDYAGKNAFAG 278
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A7S1D394_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D394_CYCTE)

HSP 1 Score: 181 bits (460), Expect = 6.470e-53
Identity = 91/186 (48.92%), Postives = 123/186 (66.13%), Query Frame = 1 
Query:   31 WQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG 588
            +Q   A   VE+ +R  + +Y  FN  TA+ W PV+V F  MLFT   +L+  +VPMVT+FKN+TNIV+  GD++FF      +V  + AVM+ GA+ A++HDI+    G FWM ANC ATAGY+LYMKFAT+ +KL KFGMVFYNN+L T  LLPA+ + G+     +  A+HT  Y   NLF+G
Sbjct:   80 FQAITAVGCVELCKRLKWVEYPNFNMRTAKLWAPVNVLFCLMLFTGMASLQFNSVPMVTIFKNITNIVVTCGDYYFFGTSVESLVAMAFAVMLGGAIAAAWHDIYITWVGLFWMCANCLATAGYILYMKFATKNVKLSKFGMVFYNNVLCTLFLLPASIFRGEVTLLLETEAIHTWDYFFKNLFAG 265
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A836C853_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C853_9STRA)

HSP 1 Score: 179 bits (454), Expect = 6.020e-51
Identity = 88/158 (55.70%), Postives = 114/158 (72.15%), Query Frame = 1 
Query:   31 WQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAA 504
            +QC VA +LVE  RR  + +    +   A +W+PV++ F  MLFTSF AL+ MNVPMVTVFKNLTN++IV GDW F++Q  T +++ S+ VMVFGA +A   D+  +AWGY WM ANC  TA Y+LYMK+AT++IKL +FGMVFYNNLL   LL P A
Sbjct:   48 FQCLVAVLLVETSRRHQWVENYALDMKLAMQWVPVNLFFCAMLFTSFMALKWMNVPMVTVFKNLTNVIIVWGDWHFYNQSVTLLILASLGVMVFGAALAGKDDMESNAWGYIWMSANCVTTASYILYMKYATRSIKLTRFGMVFYNNLLGFVLLAPVA 205
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A7S2SW66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW66_9STRA)

HSP 1 Score: 175 bits (444), Expect = 7.190e-51
Identity = 85/164 (51.83%), Postives = 116/164 (70.73%), Query Frame = 1 
Query:   34 QCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFE 525
            QC+ A +LVE  R  G   Y PF  + A RWLPV++CF  ML TSF++ + +NVP++TVFKNLTNI+IV GDW++  Q  T  +I +  VMV GA+ A+ +D+ F   GY WM+ NC +TA YVLYMK AT+++ + KFGMVFYNNLL+  LLLP A+ +G+ +
Sbjct:   56 QCSFAVLLVEASRIMGIVSYQPFQSSVALRWLPVNLCFVVMLMTSFRSFKFLNVPIITVFKNLTNILIVAGDWYWHGQRITLGIIAAFGVMVVGAVFAAKNDVLFSFEGYCWMLGNCLSTASYVLYMKTATKSVDISKFGMVFYNNLLSVPLLLPLAFGLGEVD 219
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A7S2KEU9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KEU9_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.220e-49
Identity = 90/186 (48.39%), Postives = 118/186 (63.44%), Query Frame = 1 
Query:   31 WQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG 588
            +Q  VA V VEI +R G   Y  F+ ATA++W PV++ F  MLFT   +L+  +VPMVTVFKN++NI+   GD  FF      +V+ + AVM+ GA  A+ +D+     G  WMVANC +T+GYVLYMK ATQT+KL KFGMVFYNN+L T  L PAA + G+   F     +HT  Y   N F+G
Sbjct:  110 FQAIVAVVCVEICKRVGIVDYPSFDIATAKQWAPVNIFFCLMLFTGMASLQHNSVPMVTVFKNISNIITSIGDLVFFGTTIEMLVVIAFAVMLGGACAAAVNDVECTVVGILWMVANCLSTSGYVLYMKHATQTVKLSKFGMVFYNNVLCTAFLFPAALFFGEVSTFLSSTQVHTFEYFVKNSFAG 295
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A7S2R176_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R176_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.710e-49
Identity = 86/186 (46.24%), Postives = 120/186 (64.52%), Query Frame = 1 
Query:   31 WQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG 588
            +Q  +A + VE  ++  + +Y  FN  TAR+W PV++ F  MLFT   +L+V +VPMVT+FKN+TNI    GD++FF       VI S +VM+ GAL+A+  D   +  G FWM++NC ATAGY+LYMK+AT+ +KL KFGMVFYNN+L    LLP A   G+   F +  A+H+  Y   N F+G
Sbjct:   83 FQAIIAVIAVETCKKMKWVEYPTFNMRTARQWAPVNIMFCLMLFTGMASLQVNSVPMVTIFKNITNIFCSFGDYYFFGSTVDRFVILSFSVMLLGALLAAGSDFEMNPVGIFWMISNCFATAGYILYMKYATKNVKLTKFGMVFYNNVLCILFLLPVATINGELLTFLRTNAIHSFDYFWKNGFAG 268
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BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Match: A0A7S4MX17_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MX17_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.880e-49
Identity = 88/186 (47.31%), Postives = 119/186 (63.98%), Query Frame = 1 
Query:   31 WQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFSTMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMAVMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKFGMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG 588
            +Q  VA + VEI ++  + +Y  F+F TAR+W PV++ F  MLFT   +L+  +VPMVTVFKN+TNIVI  GD +FF      +VI +  +M+ GA+ A+++D+H  + G FWM  NC  TAGYVLYMKFAT+ +KL KFGMVFYNN+L    LLP     G+   F     +HT  Y   N F+G
Sbjct:  113 FQAFVAVIAVEICKKLKWVEYPGFDFKTARQWAPVNIMFCGMLFTGMASLQHNSVPMVTVFKNITNIVISIGDLFFFGSRVEILVIVAFGIMLGGAVSAAWNDVHVTSQGVFWMCMNCFCTAGYVLYMKFATKNVKLSKFGMVFYNNILCMIFLLPVTIINGEMVTFINTDKIHTMDYFLKNTFAG 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13473.2160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTL4_ECTSI2.090e-9874.49TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5L2R8_9PHAE1.290e-6454.00TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2F6H1_9STRA9.170e-5649.48Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JIF2_FISSO1.650e-5351.08GDP-mannose transporter n=2 Tax=Fistulifera solari... [more]
A0A7S1D394_CYCTE6.470e-5348.92Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A836C853_9STRA6.020e-5155.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SW66_9STRA7.190e-5151.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2KEU9_9STRA2.220e-4948.39Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2R176_9STRA2.710e-4946.24Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4MX17_9STRA2.880e-4947.31Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13473contigH-paniculata_contig13473:3242..6868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.9
Seed ortholog evalue1.7e-78
Seed eggNOG ortholog2880.D8LTL4
Preferred nameVRG4
KEGG koko:K14835,ko:K15356
KEGG TC2.A.7.13
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000271,GO:0003674,GO:0005215,GO:0005338,GO:0005458,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0007163,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009272,GO:0009987,GO:0010383,GO:0012505,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016051,GO:0019538,GO:0022857,GO:0030447,GO:0030448,GO:0031090,GO:0031224,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0036080,GO:0036211,GO:0040007,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051278,GO:0055085,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071852,GO:0071966,GO:0090480,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1990570
EggNOG free text desc.nucleotide-sugar transmembrane transporter activity
EggNOG OGsCOG5070@1,KOG1444@2759
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-28_003670.1
EC2.1.1.310
COG Functional cat.GOU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03009
Exons4
Model size588
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13473.2160.1prot_H-paniculata_contig13473.2160.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13473 3242..6868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.6917799-CDS-H-paniculata_contig13473:3241..34421622929067.6917799-CDS-H-paniculata_contig13473:3241..3442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 3242..3442 +
1691480719.0399103-CDS-H-paniculata_contig13473:3241..34421691480719.0399103-CDS-H-paniculata_contig13473:3241..3442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 3242..3442 +
1622929067.7117252-CDS-H-paniculata_contig13473:3729..38781622929067.7117252-CDS-H-paniculata_contig13473:3729..3878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 3730..3878 +
1691480719.0559673-CDS-H-paniculata_contig13473:3729..38781691480719.0559673-CDS-H-paniculata_contig13473:3729..3878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 3730..3878 +
1622929067.7236521-CDS-H-paniculata_contig13473:5709..58051622929067.7236521-CDS-H-paniculata_contig13473:5709..5805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 5710..5805 +
1691480719.072946-CDS-H-paniculata_contig13473:5709..58051691480719.072946-CDS-H-paniculata_contig13473:5709..5805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 5710..5805 +
1622929067.7379653-CDS-H-paniculata_contig13473:6726..68681622929067.7379653-CDS-H-paniculata_contig13473:6726..6868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 6727..6868 +
1691480719.0812395-CDS-H-paniculata_contig13473:6726..68681691480719.0812395-CDS-H-paniculata_contig13473:6726..6868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13473 6727..6868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13473.2160.1

>prot_H-paniculata_contig13473.2160.1 ID=prot_H-paniculata_contig13473.2160.1|Name=mRNA_H-paniculata_contig13473.2160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
KSLAHYSVACWQCAVATVLVEIVRRAGYAQYDPFNFATARRWLPVSVCFS
TMLFTSFKALEVMNVPMVTVFKNLTNIVIVTGDWWFFHQPATPMVIWSMA
VMVFGALIASYHDIHFDAWGYFWMVANCCATAGYVLYMKFATQTIKLPKF
GMVFYNNLLTTCLLLPAAYWVGDFENFQKYPALHTKTYTSINLFSG
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mRNA from alignment at H-paniculata_contig13473:3242..6868+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13473.2160.1 ID=mRNA_H-paniculata_contig13473.2160.1|Name=mRNA_H-paniculata_contig13473.2160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3627bp|location=Sequence derived from alignment at H-paniculata_contig13473:3242..6868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCGTTGGCCCATTACTCCGTCGCTTGTTGGCAGTGCGCCGTGGCGAC
AGTACTGGTGGAGATAGTGCGAAGAGCGGGCTATGCACAGTACGACCCCT
TCAATTTCGCCACCGCGCGACGGTGGCTGCCCGTGAGTGTGTGCTTCAGC
ACCATGCTCTTCACCAGCTTCAAGGCCTTGGAGGTTATGAATGTGCCTAT
GGTGAGAGTCAGTCGTCGGCATTGCGCTACTCTCTACAGCGTATATATCC
TACCGTAACTTTTTGAGCAATCGGATTTTGTGACGACCGAACGTGTAGAT
TTTGCTAACGACCAGTTGTGGATATATAACGAGTACGCCTACAGACTGCT
TCACCGGGTCTAACGAAAAGAAGTCGTTTTTTTTCCCGTGACTTTGTGTT
CTCTCAACGGCTCTATTTATTATTATTATTTTTTTATCGAAGCCGTCCCA
CTCTCTTGTTGTCCCCTCCCTGCCCTCCCTTCTTTCAGGTAACGGTGTTC
AAGAATTTGACGAACATCGTAATTGTGACGGGTGACTGGTGGTTTTTCCA
TCAACCAGCGACGCCGATGGTCATCTGGAGCATGGCCGTCATGGTCTTCG
GAGCTCTCATCGCTTCGTACCACGACATACACTTCGAGTGAGCACTCTCC
GCGTGTGTACAACGCAGCGCAAAACACAGGGGTCGGCGTACCGTTTGTAT
GGTTTGTCGTGTGCAACAGCTTCACTCCCCTGGACAAATGCGAATACTTG
CAAATGGTTTTTTCACTAGAGATTGACAAGTATTCGCCTGAGCTTCATAA
TGAGCTCGTGCATTCTATGTGGCCCAGACCATCCACGATTGCTGATAATA
TTCATAAATCGAATGGACACGGGTGGGTACCTCAATATTTGTGTCTTCTT
ATTCTGAAACTCATACGAATATTTCCAGTTTTTGGTTAAAAATCATTTGC
GAGTATTCGCATTTGTCCGTGGGGGGGTGTGAACTGTTTCTCTCTTGAAT
CGAGTGCGAGATACTGAAAATCACCCCCCCCCCCAAAAAAAAAACCCCAA
AAAATCTAAAACGAAAAGTGAGGCCCCACATCATCGTGGTATTGGGTAAA
GCTCTTTTTCACAGGCCCCCCGCGTAGGTAGGTTAATTTCAGAATATTGT
TTTCTTGATCACAATACGCGACATATTTGTGTTGACTTTTTTTTTTTTTT
GGTTATCTTGCTAAAAATTCAGCCAGTTTTGCTATTTCTCAGTAGTATTT
GTCGCTTTAGGTCGAACGCGATGGTTGAGGTACACAAACTCAGCCTAATA
CTGTACCCGAAGGTTATCAGAACGTTCTGGTCTGGGCGGTTCTGAGTCGT
GTGCCTCAAAACAGTTTTTGCTCAAATCGGCACCGCTAGGTGGCAGCGGC
AGTGCCACACTGTGCCTAGGGGATGGGGGGCTAGGGTTGGAATTCCTGTT
AGTTCTAGCGTTTGTCCTGCTCGCGTCGTGCCACCACAGAGTGTAAGTGT
AGAACATAAAGCACAAGGGAGTTGTGAACCGTTGTATTCGATGAAGTAAT
TCGATGGGTTGAGGATAGCTCATAGACTCTTTGTGTGTAATGGTGTGTTT
CTAGTTACTTCCATTGTGATGTTCGGTCAAATCAAACCGTTTTTTTTTCC
TCACAGAGACCGTCGCGGAAGCTACAATCGTGTCGTGGTTTCACCTGGAT
TTGTCCCCATTATTTTGATGGTAAATGGATAATGACACATTGCGCGTGAT
ATTAGGGGGTAAAGGGCATGGCACGTTGGTTCAAGTACAGACGTGCGGAA
CGTTCGGAGCGCAGTTGATAAGTTTGGCCTGTGGCTTTCTCATGGCGTGT
GGGGTGAAGGGCGACCGAAAATCTATGCATCCGTCGTTGATTCAGTTCTA
TTCAAGTGTCTTTTTCCCCACATATACCTGGTGTCGTGACTTAAGCTGCG
TGAACGAACGACTCGTGAATGTTGAGCTGCAGGTGAGGAAGTCAGTAAAT
TTGCTTTGAGTTCGGTGTTCAATTAGATGCTTGTCGTGTTTGGATGACAG
CGCAGAGAAACCCCCTCTTCTTTGTCTGTTTTGTTCGAGGCAATGGCCGT
GCACGTGAACAATAGTATACCGTAGCCGTATATGCGTGCCGAGTTTTCCG
GTCTGTGAGGGGCGTGTTCCGATGGACGACAGACGTCGCTCCTCATTATT
GTTATACTAGTCCTTTTTTGTTCATCGTACGTGAACGCTTTTTTTCCAGT
AATATCGCCAAGACGCAGCAGATGTGGTGTACATTGTTTTGTACTCTCGA
ACAGTTGCTCAACCATTGTTAGCGGCACATTTGTGACTCCGCCCAGCGCT
TGTTTTCGCCTTCTCGCCCTCCCTTCCCCCCCCTAGCACCACTTCATCAA
CCTTGTAAAAATTCATGCACCTGTATGTAATCTTGTATCTGTGCTGCGTG
TTCTGTTGACGCGTGAAGCGCCTGGGGTTACTTCTGGATGGTGGCGAACT
GCTGCGCGACGGCGGGGTACGTGCTGTACATGAAGTTCGCAACACAAACC
ATCAAGCTGCCGAAGTGAGTCGGGTGTTTTTTTTAGTTCATCGCGCGCGG
AATCAATTTGCCCGCATGTGTTTTTTTCCCACCCGCGTATTCTCGGAATT
TGTTTGTGTGCATTAAAAGTTGACGGCACTTTTGTCTTATCAACGGATAT
CGGAAAATTCTTGGGTGAATGATGGTTGGTTGTTGACCATCTCTGGTAAA
ATATTCCATCTTCTCTGTCTGAAAAATTTATTTCGGTCAGACGATGGCCC
TTTTTTTTTTTTTTTCAACTCTCGGAAGGCTGAGGCGAAAACCGTCACCG
ATGCTTCCATACTTTAGTATTTCTACCGAAGTATTTCTACATTTACTTTA
ACAGAACAGAGTTATTTATTCCTCTGCAGGGTAGGCGCCACCCCGGTTCG
GCCGAACCAAGTGGGCAGTGTGGGGGTTACATCCACTAAAAGACCTCTGA
ATAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTATCCGTTCGGGTG
TAGGTCCGTGAGACGATGGTCGTATCGTTCGCACTGTCCTCTTTCAATAT
ATATATATATATATATTCACATGCCCCGTTTTTCAAGTCTTTGTTGGTCA
ACGCTGGTTAAGGAGGAGAACTTTCAGTTATCATCAATTTTATTCGTGTC
ATATCGTGGACGGGAGGTAATGAAGACCAAGAAATAATTGTGTTAACCAA
GAAATTGAAACAAGAAGCCATATATTTTCGGATCTGAGTTCGATGTATTC
TTGTGTTGCAGACGGCTGAACCTGTTTGGATTCTGGGGCGATCTCAAACA
GTTAAGGTACACCTTGGACGTGCCGATACTCTCGATATATATTCCCCCTG
TAACGCTCGAATGGCCCTATCCTGGTTTTGCTTCGTTTTGTTTCACGCAA
TTTACGTATCCGTTGGGTCATGCTTCATGCTACAGATTTGGCATGGTATT
CTACAACAACCTTCTCACCACTTGCCTTCTATTGCCGGCGGCGTATTGGG
TGGGAGACTTCGAAAACTTTCAGAAATATCCGGCGCTCCACACCAAAACC
TACACCAGCATCAACCTTTTCTCAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig13473:3242..6868+

>mRNA_H-paniculata_contig13473.2160.1 ID=mRNA_H-paniculata_contig13473.2160.1|Name=mRNA_H-paniculata_contig13473.2160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig13473:3242..6868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCGTTGGCCCATTACTCCGTCGCTTGTTGGCAGTGCGCCGTGGCGAC
AGTACTGGTGGAGATAGTGCGAAGAGCGGGCTATGCACAGTACGACCCCT
TCAATTTCGCCACCGCGCGACGGTGGCTGCCCGTGAGTGTGTGCTTCAGC
ACCATGCTCTTCACCAGCTTCAAGGCCTTGGAGGTTATGAATGTGCCTAT
GAAATCGTTGGCCCATTACTCCGTCGCTTGTTGGCAGTGCGCCGTGGCGA
CAGTACTGGTGGAGATAGTGCGAAGAGCGGGCTATGCACAGTACGACCCC
TTCAATTTCGCCACCGCGCGACGGTGGCTGCCCGTGAGTGTGTGCTTCAG
CACCATGCTCTTCACCAGCTTCAAGGCCTTGGAGGTTATGAATGTGCCTA
TGGTAACGGTGTTCAAGAATTTGACGAACATCGTAATTGTGACGGGTGAC
TGGTGGTTTTTCCATCAACCAGCGACGCCGATGGTCATCTGGAGCATGGC
CGTCATGGTCTTCGGAGCTCTCATCGCTTCGTACCACGACATACACTTCG
AGTAACGGTGTTCAAGAATTTGACGAACATCGTAATTGTGACGGGTGACT
GGTGGTTTTTCCATCAACCAGCGACGCCGATGGTCATCTGGAGCATGGCC
GTCATGGTCTTCGGAGCTCTCATCGCTTCGTACCACGACATACACTTCGA
CGCCTGGGGTTACTTCTGGATGGTGGCGAACTGCTGCGCGACGGCGGGGT
ACGTGCTGTACATGAAGTTCGCAACACAAACCATCAAGCTGCCGAACGCC
TGGGGTTACTTCTGGATGGTGGCGAACTGCTGCGCGACGGCGGGGTACGT
GCTGTACATGAAGTTCGCAACACAAACCATCAAGCTGCCGAAATTTGGCA
TGGTATTCTACAACAACCTTCTCACCACTTGCCTTCTATTGCCGGCGGCG
TATTGGGTGGGAGACTTCGAAAACTTTCAGAAATATCCGGCGCTCCACAC
CAAAACCTACACCAGCATCAACCTTTTCTCAGGTATTTGGCATGGTATTC
TACAACAACCTTCTCACCACTTGCCTTCTATTGCCGGCGGCGTATTGGGT
GGGAGACTTCGAAAACTTTCAGAAATATCCGGCGCTCCACACCAAAACCT
ACACCAGCATCAACCTTTTCTCAGGT
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