mRNA_H-paniculata_contig13469.2158.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13469.2158.1
Unique NamemRNA_H-paniculata_contig13469.2158.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A6H5KRE9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRE9_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 1.310e-95
Identity = 140/165 (84.85%), Postives = 154/165 (93.33%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFVSG 495
            YS+GSRLASELGG+ EK+WG MTLSGDENSLRN+WQMAEELKPLMM LDKD+PVITSHSLVGM AVACGFKHVINLVIDNWAQWFVV PGAINLVQGP+NYEAL+RMG+PP QV+LAGHWVPK VH TI+ DCR+RI RA +G+SARRL+VPVGGAGAQRKFVSG
Sbjct:  212 YSYGSRLASELGGVAEKVWGAMTLSGDENSLRNSWQMAEELKPLMMELDKDVPVITSHSLVGMTAVACGFKHVINLVIDNWAQWFVVVPGAINLVQGPSNYEALLRMGVPPDQVRLAGHWVPKGVHETIDQDCRSRIVRASSGVSARRLLVPVGGAGAQRKFVSG 376
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A7S0G785_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G785_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.240e-65
Identity = 104/164 (63.41%), Postives = 128/164 (78.05%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFVS 492
            YS GSR+ASE+GG VE+ WG +T SGDE+SLR T+QMAE+L+P+M+ LDK  P++ SHSLV   AVA GF +VINLVIDN+AQWFVV PGA+NLVQGP+NY A +RMG+PP Q++LAGHW+PK +   I   C  R  RA  G    RL++PVGGAGAQRKFVS
Sbjct:   39 YSKGSRMASEMGGRVEQFWGSLTKSGDEDSLRVTYQMAEQLRPVMLGLDKRSPIVASHSLVAAAAVAAGFTNVINLVIDNYAQWFVVVPGALNLVQGPSNYHAFLRMGVPPSQLQLAGHWIPKDLVEGIPSACARRTKRA--GCKPLRLLIPVGGAGAQRKFVS 200
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A7R9UP83_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UP83_DIALT)

HSP 1 Score: 208 bits (530), Expect = 2.120e-63
Identity = 99/163 (60.74%), Postives = 128/163 (78.53%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFV 489
            YS GSRLASELGG +E+ WG +T SGD ++LR T+QMAE LKPL++  D+D P+I +H LVG++A+ACGF+ V+NLVIDN AQWFVV PGA+NLVQGP+NY AL+RMG+P  Q+KL G W+PK +   I  DC AR ARA+   +  R+++PVGGAGAQR F+
Sbjct:  190 YSKGSRLASELGGTIERFWGSLTKSGDADALRVTYQMAEHLKPLLLGFDRDTPIIATHCLVGLLAIACGFRKVVNLVIDNHAQWFVVVPGALNLVQGPSNYHALLRMGVPAKQLKLVGAWIPKPLVDNIGVDCAAREARARAR-APLRVLLPVGGAGAQRSFI 351
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A7S4C6C8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C6C8_CHRCT)

HSP 1 Score: 211 bits (538), Expect = 3.010e-63
Identity = 101/163 (61.96%), Postives = 129/163 (79.14%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFV 489
            YS GSRLA+E+GG VEK+WG +T SGD N+LR T+QMAE +KPL++ L KD P+I +HSLVG++AV+CGF +VINLVIDN AQWF+V P A+NLVQGP+NY +L+ MG+PP +V LAGHW+PK++   I+ DC AR  RA      R L++PVGGAGAQR FV
Sbjct:  175 YSKGSRLATEIGGPVEKLWGAITKSGDANALRATYQMAEHIKPLLLGLPKDTPIIATHSLVGLIAVSCGFTNVINLVIDNHAQWFIVVPKALNLVQGPSNYHSLLAMGVPPEEVCLAGHWIPKALVENIDADCTARKHRAAAKKPVR-LLIPVGGAGAQRSFV 336
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A7S4U6W7_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U6W7_GUITH)

HSP 1 Score: 211 bits (538), Expect = 1.210e-62
Identity = 101/164 (61.59%), Postives = 129/164 (78.66%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFVS 492
            YS GSRLASELGG++E +WG +T SGD +SLR T+Q+AE L+PL++ + KDIP+I +HSLVG+VAVACGFK+VINLVIDN+AQWFV+ PGAINLVQGP NY    +MG+P  +++LAGHWVP  +   I+ DC  R  R K      R+++PVGGAGAQRKFV+
Sbjct:  235 YSKGSRLASELGGVIEALWGSITKSGDASSLRCTYQLAENLRPLLLDIPKDIPIIATHSLVGLVAVACGFKNVINLVIDNYAQWFVIVPGAINLVQGPTNYAMFHKMGVPTSELRLAGHWVPYDIVTNIDSDCERRRQRLKDE-KPLRILLPVGGAGAQRKFVT 397
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A7S3T669_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T669_9SPIT)

HSP 1 Score: 210 bits (535), Expect = 1.760e-62
Identity = 103/164 (62.80%), Postives = 127/164 (77.44%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFVS 492
            YS GSRLA+ELGG VEK+WG +T +GDENSLR  +QMAE L PLM S+ +DIP+I SH  VGM+AV+ GFKHV+NLVIDN AQWF+V PGA NLVQGP+NY  L+RMG+P +++ LAGHW+PK V   IE DC  R  R K G   R +++PVGGAGAQ+ FV+
Sbjct:  208 YSKGSRLATELGGPVEKLWGALTKNGDENSLRIFFQMAEHLHPLMKSIPRDIPIIASHCFVGMLAVSLGFKHVVNLVIDNHAQWFIVVPGAYNLVQGPSNYHNLLRMGVPANRLVLAGHWIPKDVVDNIEFDCELRKERTKAGQPIR-ILIPVGGAGAQKTFVT 370
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A8J5XDR5_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDR5_DIALT)

HSP 1 Score: 208 bits (530), Expect = 1.000e-61
Identity = 99/163 (60.74%), Postives = 128/163 (78.53%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFV 489
            YS GSRLASELGG +E+ WG +T SGD ++LR T+QMAE LKPL++  D+D P+I +H LVG++A+ACGF+ V+NLVIDN AQWFVV PGA+NLVQGP+NY AL+RMG+P  Q+KL G W+PK +   I  DC AR ARA+   +  R+++PVGGAGAQR F+
Sbjct:  187 YSKGSRLASELGGTIERFWGSLTKSGDADALRVTYQMAEHLKPLLLGFDRDTPIIATHCLVGLLAIACGFRKVVNLVIDNHAQWFVVVPGALNLVQGPSNYHALLRMGVPAKQLKLVGAWIPKPLVDNIGVDCAAREARARAR-APLRVLLPVGGAGAQRSFI 348
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A6V2RDS1_EMIHU (Hypothetical protein n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2RDS1_EMIHU)

HSP 1 Score: 206 bits (524), Expect = 1.790e-61
Identity = 99/164 (60.37%), Postives = 127/164 (77.44%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFVS 492
            YS GSR+A+ELGG VEK+WG +T +GDENSLR  +QMAE L+PLM ++ +  P+I +H  VGM+AV+ GFKHVINLVIDN+AQWF+V PGA NLVQGP+NY  L+RMG+P  ++ LAGHW+PK +   IE DC  R  RA+     RR+++PVGGAGAQ+ FVS
Sbjct:  195 YSKGSRMATELGGPVEKLWGMITKNGDENSLRVFYQMAEHLRPLMQAIPRSTPIIATHCFVGMLAVSLGFKHVINLVIDNYAQWFIVVPGAYNLVQGPSNYHNLLRMGVPADRLVLAGHWIPKDLVDNIEFDCELRKQRARAR-QPRRILIPVGGAGAQKTFVS 357
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: A0A7S1GX06_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GX06_HEMAN)

HSP 1 Score: 208 bits (529), Expect = 2.400e-61
Identity = 97/164 (59.15%), Postives = 125/164 (76.22%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFVS 492
            YS GSR+A+E+G   E++WG++T SGDEN LR T+ MAE +KPL+  L KD P+I +HSLVG+ AVACGFK+VINLVIDN+ QWFV+ PGA+NLVQGP N+   +R G+P  +++LAGHW P  +   IE DC+AR AR +      RL+VPVGGAGAQRKFV+
Sbjct:  235 YSMGSRIATEMGSFFERVWGRLTKSGDENMLRGTYLMAENIKPLLNGLPKDTPIIATHSLVGLTAVACGFKNVINLVIDNYPQWFVIVPGAVNLVQGPINHRTFLRWGVPQAEIRLAGHWCPADLVENIEQDCKARKAR-RAAKKPVRLLVPVGGAGAQRKFVT 397
[Close]
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Match: L1JYQ5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYQ5_GUITC)

HSP 1 Score: 201 bits (510), Expect = 3.340e-60
Identity = 99/164 (60.37%), Postives = 126/164 (76.83%), Query Frame = 1 
Query:    1 YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDKDIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPANYEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLIVPVGGAGAQRKFVS 492
            YS GSRLASELGG++E +WG +T SGD +SLR T+Q+AE L+PL++ + KDIP+I +HSLVG+VAVACGFK+VINLVIDN+AQWFV+ PGAINLVQGP NY    +MG+P  +++LAGHW        I+ DC  R  R K      R+++PVGGAGAQRKFV+
Sbjct:   62 YSKGSRLASELGGVIEALWGSITKSGDASSLRCTYQLAENLRPLLLDIPKDIPIIATHSLVGLVAVACGFKNVINLVIDNYAQWFVIVPGAINLVQGPTNYAMFHKMGVPTSELRLAGHW--------IDSDCERRRQRLKDE-KPLRILLPVGGAGAQRKFVT 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13469.2158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRE9_9PHAE1.310e-9584.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0G785_9STRA2.240e-6563.41Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9UP83_DIALT2.120e-6360.74Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7S4C6C8_CHRCT3.010e-6361.96Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4U6W7_GUITH1.210e-6261.59Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S3T669_9SPIT1.760e-6262.80Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A8J5XDR5_DIALT1.000e-6160.74Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A6V2RDS1_EMIHU1.790e-6160.37Hypothetical protein n=4 Tax=Emiliania huxleyi Tax... [more]
A0A7S1GX06_HEMAN2.400e-6159.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1JYQ5_GUITC3.340e-6060.37Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13469contigH-paniculata_contig13469:322..4574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.4
Seed ortholog evalue1.6e-77
Seed eggNOG ortholog2880.D7FY27
Hectar predicted targeting categoryother localisation
EggNOG OGs2BZA3@1,2QRM2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size495
Cds size495
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13469.2158.1prot_H-paniculata_contig13469.2158.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13469 322..4574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929067.3370614-CDS-H-paniculata_contig13469:321..4161622929067.3370614-CDS-H-paniculata_contig13469:321..416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 322..416 +
1691480718.8939855-CDS-H-paniculata_contig13469:321..4161691480718.8939855-CDS-H-paniculata_contig13469:321..416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 322..416 +
1622929067.356272-CDS-H-paniculata_contig13469:1377..14941622929067.356272-CDS-H-paniculata_contig13469:1377..1494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 1378..1494 +
1691480718.9070904-CDS-H-paniculata_contig13469:1377..14941691480718.9070904-CDS-H-paniculata_contig13469:1377..1494Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 1378..1494 +
1622929067.3748302-CDS-H-paniculata_contig13469:2781..29081622929067.3748302-CDS-H-paniculata_contig13469:2781..2908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 2782..2908 +
1691480718.914955-CDS-H-paniculata_contig13469:2781..29081691480718.914955-CDS-H-paniculata_contig13469:2781..2908Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 2782..2908 +
1622929067.3941386-CDS-H-paniculata_contig13469:3953..40151622929067.3941386-CDS-H-paniculata_contig13469:3953..4015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 3954..4015 +
1691480718.925153-CDS-H-paniculata_contig13469:3953..40151691480718.925153-CDS-H-paniculata_contig13469:3953..4015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 3954..4015 +
1622929067.4089248-CDS-H-paniculata_contig13469:4480..45741622929067.4089248-CDS-H-paniculata_contig13469:4480..4574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 4481..4574 +
1691480718.9340694-CDS-H-paniculata_contig13469:4480..45741691480718.9340694-CDS-H-paniculata_contig13469:4480..4574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13469 4481..4574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13469.2158.1

>prot_H-paniculata_contig13469.2158.1 ID=prot_H-paniculata_contig13469.2158.1|Name=mRNA_H-paniculata_contig13469.2158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
YSWGSRLASELGGMVEKIWGKMTLSGDENSLRNTWQMAEELKPLMMSLDK
DIPVITSHSLVGMVAVACGFKHVINLVIDNWAQWFVVAPGAINLVQGPAN
YEALIRMGIPPHQVKLAGHWVPKSVHATIEPDCRARIARAKTGLSARRLI
VPVGGAGAQRKFVSG
back to top

mRNA from alignment at H-paniculata_contig13469:322..4574+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13469.2158.1 ID=mRNA_H-paniculata_contig13469.2158.1|Name=mRNA_H-paniculata_contig13469.2158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4253bp|location=Sequence derived from alignment at H-paniculata_contig13469:322..4574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGCTGGGGCTCTCGCTTGGCGTCGGAGCTTGGGGGCATGGTGGAAAA
GATATGGGGGAAGATGACTCTGTCGGGGGACGAGAACTCTCTCAGGTTAG
CGGTCCGAGTCATGAGAGTAACAAGCGGTGATAGTTGTCAATTTCCAACA
TTTTTGAAATCTTTTTTATACCTCATTTCTATTCGTGTGCATGCTATGAT
TGTGCTATTGCCTTTTTTATCTTGGAAGGAGATCTGATTAAAGGATCGAT
TTTTTAGTCGTTTTTTCGCTTTTTCTCCTTTTTTTATGGCTTGACGCCTG
TTTTTTTTGTAGAGGATCTAAGGATAAAAGGAATCCGAATAGGACCCCCC
GATAATTCTGTTTTATAGCATATCTTTTATAGGTAGCATCGGCCTGATCG
TCTGGTGTAGCACCTGATGAGCTCTTATCGTACAAATTTGGATAGAGGTG
GAGGGCGGATACAGTAGTGCAATCACGTACCCGCCGAGAAAAAAATGAAA
GGTTTCCCGGCCTTCGGGAATTTGCCGGATCTAACAAGCCACCCCTCTCT
GTCGATTGTTGAACGGATCTCTGTCCTGGGACGAGGAATCACTCATGTTG
GTGGCCTGAGTCCTTTTATTATTATGGGTTTGAGGAGACATGTAATGCTG
TGTTTTTGGGACGATCTTTGTGTGCGTTTCCCTTTGGAGCAGTGTCATGA
TGGTGTATTATCTTGTAGCATTTATATTCTATATTGTTTGAACTCATTCG
AGAGGTGAGACTTCTCTTGGGGCACTATGTGCTTCAGTTGCAACAACTAG
AACTATTGACTGTTTGCCTTGTTAATTTAGCGAGACTGCTATACAATTTG
TTATCTCAGTTTTTTTTTATGACGATGGCGATGATGTTATTTTCCAGGGA
TCGTCCTTGACATGTTCTGTATCATTACGTCCACGTCGCTCGGCTTCTTT
TTTTTTCTTTTTTTTCATTCGTGTGCGAGAGGGAACACGACAATTTTGGC
ATCGCGAATTATTTTTTTCGTTTCCGTTTTCGTTTCCGTTTTTTTTTTTT
TATCAGGAACACGTGGCAGATGGCAGAGGAACTCAAGCCCTTGATGATGT
CTTTGGATAAAGATATCCCCGTCATCACCTCTCACTCGCTCGTCGGCATG
GTCGCGGTAGCATGCGGATTCAAGTGAGTCCAATATCAAGTTTTTCTTCA
CGCATTGTATGTAGCTCTTCAGCAGCCGAGATTTGTCTAGCCAGCCCCGT
GAAACTGTGTAATTGATAGCATTTTTGGTGAGTTATTTACAATATATTCG
TCATTATTCACATGTGGTTGCCAGAAAGCTCTACCGTGTAGTTGTTGAGA
GGGTTACAACCGTTGAGCGCCCTGGTGGTCGGTACCCATCTGCGGTTGTT
GTCAGTCATTATCCAACTGGGAAAAGTGTGATCACATATATCGACCACCC
TTATCGACGCAAAGGGTTAAATGTACCGTGCAAGTTCTGCTGGAAGTCTG
TCGCAGCACACAGTAGGGTACCGACACCGGTACTGTTTTTTAGGGGGAGT
AAACACTGATGGCACTGGAGATGTAGTGAGAGTAGTTTTGGAATTATAAC
GTAGTACTGGGAGGTAACCAGTATTTTGGGGACTTTTATACTGTGGTGAC
ACTGGAGGTGTATTCATTGTTTTTCGGAGATTGCACTGGCGACACTCAGT
CATCGTAGTATTTTGCCAGAAAATACTGGAGATGCATTCAGTATTTTCGG
AGATTGTACTGGCTGTATTCAGTCATGCTGGTGTGTTGTCAGCAAGACCT
GGAGATATACTCGGTAGCTGGGGGGGGTACATAGTGATGTGATAATACTG
TTGTATACCCAGTGTTTCAACACTGCCCCGAAACGGTATTGAGTATGTAC
TCGGAAATTAAATTCTGGCGAAAACTGGCTGTGTAGCCGGCATGTCTATT
ATCCTCGAGTTAGTAAAACCAGTTGTTCCTACAGTCCGCAAATCGTTCAC
ATGTGCGGCTTGTGGCTACCGTTGTACCTATCATGAGCAGTCGTCATGAT
GATGGGAAGGGAGCATGGTCCATGTACACGCGCGATTGGATCGTTGGGGC
GGATTTCGAAAGTGTGTGTCGGTACTGTTTTTGTTTATCTGATGACATAT
ACTCATGGCACACGATACAGATTGTTTCGATTGGTTTCTCTGTTTTTTTG
CTGGTTTTCGCATGTTTATCGGGTCTTCTCTCTTCTACTTCCCCTGAATA
TATATATTTTAATTCGGGTCTCTCGCTTTCTAGGCAGTATGAAGAAGTAT
GCATGGCAAACGACCGAGGTTGTTGTCGATATGTCAATCATCCTTGGGTT
GGAGTTTTTGCTTTTTGTGTTCTGTCTTCTGCTGACTTGCTGATTTGGAC
TGCCCTCTCCCGAGATGTTTCTGTATTTGACTCGGTGTGTATGTCTCTCG
TCTGTTTCAGGCACGTGATTAATCTTGTAATAGACAACTGGGCACAGTGG
TTCGTTGTGGCACCCGGAGCCATCAATCTTGTCCAGGGACCTGCGAACTA
CGAGGCGTTAATCAGAATGGGTATTCCCCCACACCAGGTGCGTCGTAGGC
CGAATAAATGTGTGTCAGGGGGGGCAGCATGGTGATCCATCGGGATCAGG
TGCGTCGCAATTAGAATTGGGATCTATCTGGGGCAGGTATGTCGGCATCA
TAATTGGGATCCATTCGGATCAGGTGTGTCGTAAGCATAATCGGGATCCA
TTTGGATCAGGTGTGTCGTAAGCATAATCGGGATCCATTCGGATCAGGTG
TGTCGTAAGCATAATCGGGATCCATTCGGATCAGGTGTGTCGTAAGCATA
ATCGGGATCCATTCGGATCAAGTGTGTCGTAAGCATAATCGGGATCCATT
CGGATCAGGTGTGTCGTAAGCATAATCGGGATCCATTCGGATCAGGTGTG
TCGTAAGCACAATCGGGATCCATTCGGATCAGGTGTGTCGTAAGCATAGT
TGAGATCAGGTGTGTCTTGATCGAAATCGGGATCTGTGCGGATCGGGGGT
CTGTCCGGATCAGTTGCGTCGGTGAGTCGGCGAAGCTCACAATACTCTGG
CTGGGCTGCAGCCCACTGTTGCACTTTTGAGAGGGTGGCTGGAAACAAAA
CGAGAAAAATGGTCACAACTAACTTAGTTTGTGCTTTTCAAGAGCTTTCC
TCAAGAGCTTGTGAAGTGCACGAACTGAATTGGCGGCCAAGATAGATGCA
TACAGTGAAGATGGAGCAGTTAGGCTGTTTCAAAAAAGAGGATTAAAACA
AGAATGAAAAGCATGTAAAGAACAAAAAATCGTGAAATCCGATTTGAGAA
GGAGATTCGACGGGGTGGGAATTTCAGGATATGGGTTTGGATAGGCCCCT
GGCTTGGATTATATACGCGAGAAATCAAACACAATTTTTTTTTTCTTGCT
GAAAATAGTTAACAATTTTGATCTCTTTTGCTTTTTTCATGTGTTCGAAT
CCTAAATCGGCCATGTGTTTATTTCTTTATATCCATTTAATTAGTGTTGA
TGTTTTACGGTATATTCCACTATTCTGATCTAAAACCGTGTTCAACCTTT
GAGTTTTCGGGTTGTTGCTTATCTGTGTACAGGTGAAGCTTGCCGGTCAC
TGGGTTCCCAAGAGTGTCCACGCCACGATAGAGCCAGACTGCAGGTAAGT
CCAGCATGTGAAACGCTTTGATCCATATGGTCGACGTGTCGGGAGAGCTT
CCCTTGACTGTTGATACAACTCTCTTTGTTTCAATTTTGTGATTTTTTTT
TTTTCGGGGGAGGGGGGGCGGGGGAACCGTAAGAAATGAAATTAGCACCA
TTAGGTTAGTTACCCTCTGATGAACAACAATTACTTGGAAACTTTTAAAG
ATTTTTTGGAAAATTATCCTGCGAGCATTTTTATTTCCCTCTCTCATCGT
AGTAAATATTGGACGAGCGTTCATCAATGTCTATTACGTTTATGTGTATA
TTGTGGTGGAAGCAAAACTACAGACAGTGGCTACACCTGTGTCGTCCGTG
TTTTTGTGCTCGTCCGACGCACACTGTTCTCCAGTTACAGGAATGTAGCA
TTTTAAAGGCTAAGTATAATATGTATTTTTCGCTCTTTCTGTGGCGGGGG
GGGTATCAGGGCGAGGATCGCCCGCGCCAAGACGGGGCTGAGCGCACGGC
GTCTGATCGTGCCCGTTGGAGGTGCCGGAGCTCAGCGGAAATTCGTCTCA
GGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13469:322..4574+

>mRNA_H-paniculata_contig13469.2158.1 ID=mRNA_H-paniculata_contig13469.2158.1|Name=mRNA_H-paniculata_contig13469.2158.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig13469:322..4574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGCTGGGGCTCTCGCTTGGCGTCGGAGCTTGGGGGCATGGTGGAAAA
GATATGGGGGAAGATGACTCTGTCGGGGGACGAGAACTCTCTCAGTACAG
CTGGGGCTCTCGCTTGGCGTCGGAGCTTGGGGGCATGGTGGAAAAGATAT
GGGGGAAGATGACTCTGTCGGGGGACGAGAACTCTCTCAGGAACACGTGG
CAGATGGCAGAGGAACTCAAGCCCTTGATGATGTCTTTGGATAAAGATAT
CCCCGTCATCACCTCTCACTCGCTCGTCGGCATGGTCGCGGTAGCATGCG
GATTCAAGAACACGTGGCAGATGGCAGAGGAACTCAAGCCCTTGATGATG
TCTTTGGATAAAGATATCCCCGTCATCACCTCTCACTCGCTCGTCGGCAT
GGTCGCGGTAGCATGCGGATTCAAGCACGTGATTAATCTTGTAATAGACA
ACTGGGCACAGTGGTTCGTTGTGGCACCCGGAGCCATCAATCTTGTCCAG
GGACCTGCGAACTACGAGGCGTTAATCAGAATGGGTATTCCCCCACACCA
GGCACGTGATTAATCTTGTAATAGACAACTGGGCACAGTGGTTCGTTGTG
GCACCCGGAGCCATCAATCTTGTCCAGGGACCTGCGAACTACGAGGCGTT
AATCAGAATGGGTATTCCCCCACACCAGGTGAAGCTTGCCGGTCACTGGG
TTCCCAAGAGTGTCCACGCCACGATAGAGCCAGACTGCAGGTGAAGCTTG
CCGGTCACTGGGTTCCCAAGAGTGTCCACGCCACGATAGAGCCAGACTGC
AGGGCGAGGATCGCCCGCGCCAAGACGGGGCTGAGCGCACGGCGTCTGAT
CGTGCCCGTTGGAGGTGCCGGAGCTCAGCGGAAATTCGTCTCAGGTGGCG
AGGATCGCCCGCGCCAAGACGGGGCTGAGCGCACGGCGTCTGATCGTGCC
CGTTGGAGGTGCCGGAGCTCAGCGGAAATTCGTCTCAGGT
back to top