mRNA_H-paniculata_contig13429.2142.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13429.2142.1
Unique NamemRNA_H-paniculata_contig13429.2142.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 9.080e-36
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 1
Query:    1 MLYAVKREHLRIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFEVPSEIIQASLNFDN 264
            M Y +  EHLR+AFVEEN GEG VVNDL QG VTFF  GLIHY+QNL CEP T+L+AL N DP  VT TTRFFE+PSE IQASLNF++
Sbjct:  100 MQYVINGEHLRVAFVEENGGEGAVVNDLSQGDVTFFPQGLIHYEQNLGCEPVTFLAALNNDDPGAVTITTRFFELPSEAIQASLNFED 187          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.180e-35
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 MLYAVKREHLRIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFEVPSEIIQASLNFD 261
            M+Y +K E LR+AFVEEN GEG VVNDL QG V FF  GLIHYQQNLDCEPAT+L+AL N DP  +T TTRFFE+P E IQAS+NF+
Sbjct:   99 MVYVIKGEQLRVAFVEENGGEGAVVNDLAQGDVAFFPQGLIHYQQNLDCEPATFLAALNNEDPGAITITTRFFELPLEAIQASVNFE 185          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A0L0G050_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G050_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 3.280e-12
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   34 IAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFEVPSEIIQAS 249
            + FV EN G G ++N+L     TFF  GLIH+QQN++CEPA ++S+L  VDP  +T   + F +P+E + A+
Sbjct:  182 VGFVGENGG-GAIMNNLSADMSTFFPQGLIHFQQNMECEPAVFVSSLNGVDPGTITLPEQLFALPTEALSAA 252          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A0L0FML7_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FML7_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 2.490e-10
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   28 LRIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFEVPSEIIQASLNFD 261
            L + FV E+     V+ND+     TFF  GL+HYQQN++CEPA+++S L + DP L         +P E ++A L+ D
Sbjct:   33 LTVGFVAESSR--LVLNDIETDQSTFFPQGLLHYQQNMNCEPASFISILDSADPGLSVIAAALTALPDEALKAVLDED 108          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A433DF28_9FUNG (RmlC-like cupin n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DF28_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 2.620e-10
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   40 FVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFE-VPSEIIQASL 252
            F EEN G   +VN LH+G VT F  G IH++QNL+CEPA +++A  + DP + T  + F   +P++I+ ASL
Sbjct:  131 FFEEN-GARFIVNTLHKGEVTVFPMGAIHFEQNLNCEPAVFVAAFNSEDPGVSTIGSNFIGGLPADIVSASL 201          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A0L0FUE8_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUE8_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 4.370e-10
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   28 LRIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFEVPSEIIQASLNFD 261
            L + FV E  G   ++ND+     TFF  GL+HYQQN+ CEPA ++S L + DP L+       E+PSE ++A+ + D
Sbjct:  190 LTVGFVTE--GGRLILNDVKTDQSTFFPQGLLHYQQNMACEPAGFISILNSSDPGLLVIPAALAELPSEALEATFDED 265          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A815DHH0_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A815DHH0_9BILA)

HSP 1 Score: 62.8 bits (151), Expect = 9.820e-10
Identity = 30/75 (40.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   31 RIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFF-EVPSEIIQASL 252
            +I F +EN G   ++N+LH+  V  F  G IH++QNL+C PAT+++A  + DP ++T +  FF  +P+ I+ A+L
Sbjct:  164 QIGFFQEN-GASFIMNELHKNQVAVFPKGAIHFEQNLNCTPATFVAAFNSEDPGVLTISNSFFGSLPATIVGATL 237          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A0L0GAB9_9EUKA (Cupin type-1 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GAB9_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-9
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    7 YAVKREHLRIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFEVPSEIIQASLNFD 261
            Y ++ E L + FV E+    TV+ND+     TFF  GL+HYQQN+ CEPA ++S L + DP L+        +P E I A+ + D
Sbjct:   91 YMIEGE-LTVGFVMESGR--TVINDIKADQSTFFPQGLLHYQQNMGCEPAGFISILDSSDPGLLVIAAAVAGLPEEAIAAAFDED 172          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A814L9M3_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814L9M3_ADIRI)

HSP 1 Score: 62.0 bits (149), Expect = 1.620e-9
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   25 HLRIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFF-EVPSEIIQASL 252
            H ++ F +EN G   ++N++ +  V  F  G IH++QNL+CEPAT+++A  + DP ++T    +F  +P+ +I A+L
Sbjct:  143 HFQVGFYQEN-GAAFIMNEIQKNQVAVFPKGAIHFEQNLNCEPATFVAAFNSEDPGVLTIANAYFGALPATVIGANL 218          
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Match: A0A819MHR3_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A819MHR3_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 2.030e-9
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   34 IAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCEPATYLSALINVDPVLVTFTTRFFE-VPSEIIQASL 252
            + F++EN G G ++N + +G    F  G IH++QNL+C PAT+++A  N DP ++T    FF  +P+ ++ ASL
Sbjct:  134 VGFLQEN-GVGFIMNTVRRGMAAVFPQGAIHFEQNLNCVPATFVAAFNNEDPGVLTIANTFFGGLPANVVGASL 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13429.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDW6_ECTSI9.080e-3670.45Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE2.180e-3570.11Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
A0A0L0G050_9EUKA3.280e-1244.44Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A0L0FML7_9EUKA2.490e-1039.74Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A433DF28_9FUNG2.620e-1045.83RmlC-like cupin n=2 Tax=Jimgerdemannia flammicoron... [more]
A0A0L0FUE8_9EUKA4.370e-1041.03Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A815DHH0_9BILA9.820e-1040.00Hypothetical protein n=3 Tax=Adineta steineri TaxI... [more]
A0A0L0GAB9_9EUKA1.010e-940.00Cupin type-1 domain-containing protein n=1 Tax=Sph... [more]
A0A814L9M3_ADIRI1.620e-936.36Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
A0A819MHR3_9BILA2.030e-939.19Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13429contigH-paniculata_contig13429:1724..2197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.7e-29
Seed eggNOG ortholog2880.D7FI67
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size266
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.9482844-CDS-H-paniculata_contig13429:1723..17441622929064.9482844-CDS-H-paniculata_contig13429:1723..1744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13429 1724..1744 -
1691480717.9104779-CDS-H-paniculata_contig13429:1723..17441691480717.9104779-CDS-H-paniculata_contig13429:1723..1744Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13429 1724..1744 -
1622929064.9646652-CDS-H-paniculata_contig13429:1954..21971622929064.9646652-CDS-H-paniculata_contig13429:1954..2197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13429 1955..2197 -
1691480717.922681-CDS-H-paniculata_contig13429:1954..21971691480717.922681-CDS-H-paniculata_contig13429:1954..2197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13429 1955..2197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13429.2142.1prot_H-paniculata_contig13429.2142.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13429 1724..2197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13429.2142.1

>prot_H-paniculata_contig13429.2142.1 ID=prot_H-paniculata_contig13429.2142.1|Name=mRNA_H-paniculata_contig13429.2142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MLYAVKREHLRIAFVEENDGEGTVVNDLHQGGVTFFSHGLIHYQQNLDCE
PATYLSALINVDPVLVTFTTRFFEVPSEIIQASLNFDN
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mRNA from alignment at H-paniculata_contig13429:1724..2197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13429.2142.1 ID=mRNA_H-paniculata_contig13429.2142.1|Name=mRNA_H-paniculata_contig13429.2142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig13429:1724..2197- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTACGCGGTCAAAAGAGAGCACTTGCGGATCGCGTTCGTAGAGGA GAACGACGGTGAGGGGACCGTGGTCAACGATCTCCACCAGGGAGGCGTGA CTTTCTTCTCCCATGGTCTCATCCACTACCAGCAGAACCTCGACTGCGAG CCCGCCACGTACCTGTCGGCGCTGATCAATGTGGACCCCGTCCTGGTGAC CTTCACAACCCGCTTCTTCGAGGTGCCCAGCGAAATCATCCAGGTGATGA TTCCAGCGATACATTGCCCATGTAATGCACACGATGCAGGCGAGCAGAGG AGCCCGCCCAACGGCCGCGATTCGACTGTCCGTAGCCTTGGTCTGCTCGA TGTTTGTTCACACGCATTGCCCCCACATTGGCACTTTCTGGGCGAAACAC GGTTCTCACAGGTCACTCGAACCTTTATCTGCGGTTTGATTTCTTGTGCA TAGGCGTCACTGAACTTCGACAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig13429:1724..2197-

>mRNA_H-paniculata_contig13429.2142.1 ID=mRNA_H-paniculata_contig13429.2142.1|Name=mRNA_H-paniculata_contig13429.2142.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig13429:1724..2197- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTACGCGGTCAAAAGAGAGCACTTGCGGATCGCGTTCGTAGAGGA
GAACGACGGTGAGGGGACCGTGGTCAACGATCTCCACCAGGGAGGCGTGA
CTTTCTTCTCCCATGGTCTCATCCACTACCAGCAGAACCTCGACTGCGAG
CCCGCCACGTACCTGTCGGCGCTGATCAATGTGGACCCCGTCCTGGTGAC
CTTCACAACCCGCTTCTTCGAGGTGCCCAGCGAAATCATCCAGATGCTGT
ACGCGGTCAAAAGAGAGCACTTGCGGATCGCGTTCGTAGAGGAGAACGAC
GGTGAGGGGACCGTGGTCAACGATCTCCACCAGGGAGGCGTGACTTTCTT
CTCCCATGGTCTCATCCACTACCAGCAGAACCTCGACTGCGAGCCCGCCA
CGTACCTGTCGGCGCTGATCAATGTGGACCCCGTCCTGGTGACCTTCACA
ACCCGCTTCTTCGAGGTGCCCAGCGAAATCATCCAGGCGTCACTGAACTT
CGACAACGCGTCACTGAACTTCGACAAC
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