mRNA_H-paniculata_contig13319.2074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13319.2074.1
Unique NamemRNA_H-paniculata_contig13319.2074.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: D7FRB8_ECTSI (Thaumatin-domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB8_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.490e-25
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVYIVGDPSEKTPEEI 195
            YKYM LQYS++CFC D Y+T E +AIP DTCN+PC GD ++ CGG W+NS+YIVGDP+E T EE+
Sbjct:  286 YKYMALQYSQDCFCADTYYTAERDAIPTDTCNMPCKGDENVICGGAWSNSIYIVGDPTEMTEEEL 350          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A8B6FEV9_MYTGA (WSC domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FEV9_MYTGA)

HSP 1 Score: 64.7 bits (156), Expect = 4.600e-11
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVYIV 162
            YKY+GLQY++EC+CG+   T  N   P   C +PC+GD +  CGG   NSVY V
Sbjct:  153 YKYLGLQYAQECWCGNKMDTVRNHRAPDTECKMPCSGDKNRMCGGGCRNSVYYV 206          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A8K0E9J7_BRALA (PCSK9 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0E9J7_BRALA)

HSP 1 Score: 65.5 bits (158), Expect = 8.530e-11
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVY 156
            Y+Y GLQY +ECFCGD +      A P   CN PC+GD   TCGG W NS+Y
Sbjct:  372 YRYAGLQYGKECFCGDNF--GGFGAAPESECNKPCSGDAAKTCGGDWRNSIY 421          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A371CTL9_9APHY (WSC-domain-containing protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A371CTL9_9APHY)

HSP 1 Score: 64.3 bits (155), Expect = 2.160e-10
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVY 156
            Y   G++Y REC+CG+ +   + +++PA TCN+ CAGD   TCGG W  + +
Sbjct:  569 YSLAGIEYGRECYCGNTFSNSQGKSLPASTCNMACAGDKTATCGGSWALTAF 620          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A371DRZ6_9APHY (WSC-domain-containing protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A371DRZ6_9APHY)

HSP 1 Score: 62.8 bits (151), Expect = 3.890e-10
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGD-YYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVY 156
            Y Y G++Y+ EC CG     +P  +A PA  C++PCAGD D+ CGGPW   +Y
Sbjct:   82 YTYAGVEYADECHCGTGLTSSPPPQAAPAAECDMPCAGDADLACGGPWRIQIY 134          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A8B6EF31_MYTGA (WSC domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EF31_MYTGA)

HSP 1 Score: 61.2 bits (147), Expect = 4.150e-10
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVYIV 162
            YKY+GLQ S  C CG+ Y++          CN PCAG+P+  CGG W N++Y V
Sbjct:  101 YKYLGLQASHWCLCGNRYYSHAFPQASELQCNYPCAGEPNRMCGGAWRNAIYEV 154          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A8B6GEC8_MYTGA (WSC domain-containing protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GEC8_MYTGA)

HSP 1 Score: 58.9 bits (141), Expect = 7.880e-10
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVYI 159
            YKY GLQY  +CFCG+     +   +P   CN+ CA + +  CGG + NS+YI
Sbjct:   36 YKYSGLQYRTQCFCGNKLANKQYPRVPESDCNMACADETNRMCGGGYRNSIYI 88          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: UPI00160102B7 (uncharacterized protein LOC118427567 isoform X1 n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160102B7)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVY 156
            Y+Y GLQY +ECFCGD +   +  A P   C+ PC G    TCGG W NS+Y
Sbjct:  376 YRYAGLQYGKECFCGDSF--GQFGAAPESECSTPCTGSSADTCGGNWRNSIY 425          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A420Y4E0_9PEZI (WSC domain-containing protein n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420Y4E0_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 1.780e-9
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVYIVG 165
            Y+Y GL+YSREC+C  Y  +  +E +    C+LPCAGD  + CGG    SVY+VG
Sbjct:  101 YQYAGLEYSRECWCAPY-LSGASEKMDEAECDLPCAGDEGVVCGGNAKLSVYMVG 154          
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Match: A0A1I8HPB6_9PLAT (WSC domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HPB6_9PLAT)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 YKYMGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVYIVGDPSEK 180
            YKY+G+QY+ +CFCG+ Y      A  A TC++ C G  D  CGG W N+VY  G  +E+
Sbjct:   40 YKYLGVQYASQCFCGNKYGRYGKGA--AHTCSMACNGKKDEICGGVWRNNVYATGREAEE 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13319.2074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRB8_ECTSI1.490e-2564.62Thaumatin-domain containing protein n=2 Tax=Ectoca... [more]
A0A8B6FEV9_MYTGA4.600e-1150.00WSC domain-containing protein n=1 Tax=Mytilus gall... [more]
A0A8K0E9J7_BRALA8.530e-1153.85PCSK9 protein n=2 Tax=Branchiostoma lanceolatum Ta... [more]
A0A371CTL9_9APHY2.160e-1042.31WSC-domain-containing protein n=2 Tax=Polyporus Ta... [more]
A0A371DRZ6_9APHY3.890e-1047.17WSC-domain-containing protein n=2 Tax=Polyporus Ta... [more]
A0A8B6EF31_MYTGA4.150e-1046.30WSC domain-containing protein n=2 Tax=Mytilus gall... [more]
A0A8B6GEC8_MYTGA7.880e-1043.40WSC domain-containing protein (Fragment) n=1 Tax=M... [more]
UPI00160102B71.040e-950.00uncharacterized protein LOC118427567 isoform X1 n=... [more]
A0A420Y4E0_9PEZI1.780e-949.09WSC domain-containing protein n=1 Tax=Coniochaeta ... [more]
A0A1I8HPB6_9PLAT1.810e-945.00WSC domain-containing protein n=1 Tax=Macrostomum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13319contigH-paniculata_contig13319:6844..7050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue2e-07
Seed eggNOG ortholog944479.JQLX01000011_gene686
Preferred namedpp7
KEGG koko:K01173,ko:K01315
KEGG Pathwayko04080,ko04210,ko04610,ko05150,ko05164,map04080,map04210,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005576,GO:0005623,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008239,GO:0009056,GO:0009279,GO:0009986,GO:0009987,GO:0016020,GO:0016049,GO:0016787,GO:0017171,GO:0019538,GO:0019867,GO:0030154,GO:0030312,GO:0030313,GO:0031975,GO:0032502,GO:0033218,GO:0034641,GO:0040007,GO:0042277,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044462,GO:0044464,GO:0048468,GO:0048588,GO:0048589,GO:0048856,GO:0048869,GO:0070011,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.WSC domain
EggNOG OGs1NG4U@1224,2M6YU@213113,2X6WW@28221,43BII@68525,COG3591@1,COG3591@2
EC3.4.21.7
COG Functional cat.E
Best tax levelDesulfurellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029,ko04147,ko04516
Exons1
Model size207
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929054.993132-UTR-H-paniculata_contig13319:6843..68521622929054.993132-UTR-H-paniculata_contig13319:6843..6852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13319 6844..6852 +
1691480714.0365086-UTR-H-paniculata_contig13319:6843..68521691480714.0365086-UTR-H-paniculata_contig13319:6843..6852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13319 6844..6852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.0126038-CDS-H-paniculata_contig13319:6852..70501622929055.0126038-CDS-H-paniculata_contig13319:6852..7050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13319 6853..7050 +
1691480714.0480664-CDS-H-paniculata_contig13319:6852..70501691480714.0480664-CDS-H-paniculata_contig13319:6852..7050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13319 6853..7050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13319.2074.1prot_H-paniculata_contig13319.2074.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13319 6853..7050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13319.2074.1

>prot_H-paniculata_contig13319.2074.1 ID=prot_H-paniculata_contig13319.2074.1|Name=mRNA_H-paniculata_contig13319.2074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MGLQYSRECFCGDYYFTPENEAIPADTCNLPCAGDPDITCGGPWTNSVYI
VGDPSEKTPEEIEVRL
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mRNA from alignment at H-paniculata_contig13319:6844..7050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13319.2074.1 ID=mRNA_H-paniculata_contig13319.2074.1|Name=mRNA_H-paniculata_contig13319.2074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig13319:6844..7050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAAATACATGGGGCTTCAGTATTCCAGAGAGTGCTTTTGCGGAGACTA CTACTTCACCCCTGAAAACGAAGCTATCCCTGCCGACACGTGTAACTTGC CCTGTGCGGGAGACCCAGACATCACGTGCGGCGGCCCTTGGACGAACTCA GTCTATATTGTGGGCGATCCCTCCGAGAAAACACCGGAGGAAATCGAGGT GCGTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig13319:6844..7050+

>mRNA_H-paniculata_contig13319.2074.1 ID=mRNA_H-paniculata_contig13319.2074.1|Name=mRNA_H-paniculata_contig13319.2074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig13319:6844..7050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCTTCAGTATTCCAGAGAGTGCTTTTGCGGAGACTACTACTTCAC
CCCTGAAAACGAAGCTATCCCTGCCGACACGTGTAACTTGCCCTGTGCGG
GAGACCCAGACATCACGTGCGGCGGCCCTTGGACGAACTCAGTCTATATT
GTGGGCGATCCCTCCGAGAAAACACCGGAGGAAATCGAGGTGCGTTTGAT
GGGGCTTCAGTATTCCAGAGAGTGCTTTTGCGGAGACTACTACTTCACCC
CTGAAAACGAAGCTATCCCTGCCGACACGTGTAACTTGCCCTGTGCGGGA
GACCCAGACATCACGTGCGGCGGCCCTTGGACGAACTCAGTCTATATTGT
GGGCGATCCCTCCGAGAAAACACCGGAGGAAATCGAGGTGCGTTTG
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