mRNA_H-paniculata_contig133.2066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig133.2066.1
Unique NamemRNA_H-paniculata_contig133.2066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig133.2066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig133contigH-paniculata_contig133:42156..42484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.7864382-CDS-H-paniculata_contig133:42155..424821622929053.7864382-CDS-H-paniculata_contig133:42155..42482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig133 42156..42482 +
1691480713.6141577-CDS-H-paniculata_contig133:42155..424821691480713.6141577-CDS-H-paniculata_contig133:42155..42482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig133 42156..42482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig133.2066.1prot_H-paniculata_contig133.2066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig133 42156..42482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig133.2066.1

>prot_H-paniculata_contig133.2066.1 ID=prot_H-paniculata_contig133.2066.1|Name=mRNA_H-paniculata_contig133.2066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
TGHGRGARPQDGCGREHGAGRGRGSELPRLALRGSRCACCSTEVVRGVRT
MGLPYTHALHTVCTLNILERPPAPGPLCCPYPGCGASHDHQPVLEYVVQE
DPSSRERVE
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mRNA from alignment at H-paniculata_contig133:42156..42484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig133.2066.1 ID=mRNA_H-paniculata_contig133.2066.1|Name=mRNA_H-paniculata_contig133.2066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=329bp|location=Sequence derived from alignment at H-paniculata_contig133:42156..42484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGGACATGGGAGAGGGGCAAGACCCCAAGATGGATGCGGACGAGAGCA
TGGTGCTGGACGCGGCCGTGGCAGCGAGCTCCCGAGGCTGGCCTTGCGAG
GATCTCGCTGTGCCTGTTGTTCGACGGAGGTGGTGCGCGGGGTACGGACT
ATGGGATTGCCATACACTCACGCACTACACACCGTGTGCACACTTAACAT
ACTGGAACGCCCTCCGGCGCCAGGCCCGCTTTGCTGCCCATACCCAGGGT
GCGGGGCGAGTCATGACCATCAACCAGTGCTGGAGTACGTCGTGCAGGAA
GACCCAAGCAGCCGTGAGAGGGTAGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig133:42156..42484+

>mRNA_H-paniculata_contig133.2066.1 ID=mRNA_H-paniculata_contig133.2066.1|Name=mRNA_H-paniculata_contig133.2066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig133:42156..42484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGGACATGGGAGAGGGGCAAGACCCCAAGATGGATGCGGACGAGAGCA
TGGTGCTGGACGCGGCCGTGGCAGCGAGCTCCCGAGGCTGGCCTTGCGAG
GATCTCGCTGTGCCTGTTGTTCGACGGAGGTGGTGCGCGGGGTACGGACT
ATGGGATTGCCATACACTCACGCACTACACACCGTGTGCACACTTAACAT
ACTGGAACGCCCTCCGGCGCCAGGCCCGCTTTGCTGCCCATACCCAGGGT
GCGGGGCGAGTCATGACCATCAACCAGTGCTGGAGTACGTCGTGCAGGAA
GACCCAAGCAGCCGTGAGAGGGTAGAGACTGGACATGGGAGAGGGGCAAG
ACCCCAAGATGGATGCGGACGAGAGCATGGTGCTGGACGCGGCCGTGGCA
GCGAGCTCCCGAGGCTGGCCTTGCGAGGATCTCGCTGTGCCTGTTGTTCG
ACGGAGGTGGTGCGCGGGGTACGGACTATGGGATTGCCATACACTCACGC
ACTACACACCGTGTGCACACTTAACATACTGGAACGCCCTCCGGCGCCAG
GCCCGCTTTGCTGCCCATACCCAGGGTGCGGGGCGAGTCATGACCATCAA
CCAGTGCTGGAGTACGTCGTGCAGGAAGACCCAAGCAGCCGTGAGAGGGT
AGAG
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