mRNA_H-paniculata_contig13292.2058.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13292.2058.1
Unique NamemRNA_H-paniculata_contig13292.2058.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13292.2058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13292contigH-paniculata_contig13292:752..2330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.920142-CDS-H-paniculata_contig13292:751..8831622929052.920142-CDS-H-paniculata_contig13292:751..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13292 752..883 -
1691480713.3651042-CDS-H-paniculata_contig13292:751..8831691480713.3651042-CDS-H-paniculata_contig13292:751..883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13292 752..883 -
1622929053.1447043-CDS-H-paniculata_contig13292:2162..23301622929053.1447043-CDS-H-paniculata_contig13292:2162..2330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13292 2163..2330 -
1691480713.3730447-CDS-H-paniculata_contig13292:2162..23301691480713.3730447-CDS-H-paniculata_contig13292:2162..2330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13292 2163..2330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13292.2058.1prot_H-paniculata_contig13292.2058.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13292 752..2330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13292.2058.1

>prot_H-paniculata_contig13292.2058.1 ID=prot_H-paniculata_contig13292.2058.1|Name=mRNA_H-paniculata_contig13292.2058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MKEFAHLSVSELCASTQALEEEALGALMKDNSSLLADLTLALREAQHHSD
RGHFVQGHLTRCKVERDHAKILASRLQEEIGVLKTELDSEKQANTGASAQ
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mRNA from alignment at H-paniculata_contig13292:752..2330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13292.2058.1 ID=mRNA_H-paniculata_contig13292.2058.1|Name=mRNA_H-paniculata_contig13292.2058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1579bp|location=Sequence derived from alignment at H-paniculata_contig13292:752..2330- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAATTCGCGCACCTTTCTGTTTCTGAGCTATGTGCAAGCACGCA
AGCTCTAGAGGAAGAGGCGCTGGGTGCGTTGATGAAGGACAATTCCTCCC
TCCTCGCCGATCTTACGCTTGCTCTCCGGGAAGCTCAACACCACAGCGAC
AGGGGACATTTCGTGCAGGTAAGCAGCACCAGGATGATGCCTTGGGTCTT
CAATTAAGTAGGTGCTTGCGTGGAATATTTTTCTGTTTTGTGTGCTATCC
TGAATCCGAAAATGATTCGGTTGCTGATTGATATTGAAATACACGGAGAG
GATTACGTGAGGTGTCCGCAATCGACGTGTTTAGTCAGATTATATGTCTC
CCCTATTCGAGGAATAGAGTGTTTTTGGGGGGGGGCTGATGCATACACGT
GTGTATACGTATATACAACGATGTGATTGATGTGTACCGACTGTGATGCC
CAGCCAAAAACTTCAAACTTTGGCTACGGACAGACAAACATGTCAAAATA
ATACGCTGTTTTAGTGGCGTGCGTCATTGGTAAATGATAGATCAATGACC
CCCTCTGGTCGTGCAAAGTCATCACGCGTTACACCTGGTAAGACACGCCT
CTCTGTATACTGTACAGCGACATGAATAACACACCAAAAGTTGCATACAC
GATAGGAGAATCTCTAATATCAAGTAATGCATTGTATTCGGATCATAGCA
CGTTCAACAGGAGAAACGGGTTGGGGTACTCTGGTCGTTGGAAGCCGTCT
GGACGTTCTGACCAGGGTGTAGTACTGATGCCAACTATCCCTCCCCTGTG
ACATGGAGTAGTTAATTCATCGACTACTGGCAGACAACGGGTGGCGAAAA
TAGGGAGGACAGAGCCAGCCAGCTGCACAAGAGGCGATCATTTTGCTCAT
AACACGGGTTCAGGGAACCTTACTTTCTGACCTGCGGCTTATCTTGCAAT
TATGGTATCACATCTCTAGTCACACCCTAATGGACTCAGGCGCTACAACT
ACGTGTTGTGATACAAAATGTGGTTTCCCCGTGTCATATACCACAAAACA
CAGGAGTGGTGTCGCTCGAAATATAGGCGCTCCAGTATTGTGAATTATCT
CGTGGACAATTCGCTCCCTGGTTACTACGCCAATCTCAACGAAATACACA
GGAATTGAAAACAAACAGCATAGCTCTATACTAATAGCAAAGCTACGGGT
GCGCCTCTGAAGCAAGCGTTTTTTTCGTTCGTGATCTAGATACACATGCC
TGAACATTCGAGTCCACAAGTTGGTTGAGTAGACAAGATAAAACTGTTCC
GGAATTACCACATCCAGGCATTCGCTTTCATGTCAAAGAACGCTCGCACC
AAGTATGAAATATCGCATAGAAGGAGTCATTAATGGTACCTCAAACGTCC
CTGAAAAATTACATCGACCCTACCGTCGGCGTGGGCGATTGATTCAGGGA
CACCTCACGCGGTGCAAGGTCGAGCGTGACCATGCCAAGATCTTAGCCTC
GAGACTGCAGGAGGAAATTGGAGTCCTGAAGACCGAGCTAGATTCTGAGA
AGCAAGCCAACACTGGGGCGTCTGCTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig13292:752..2330-

>mRNA_H-paniculata_contig13292.2058.1 ID=mRNA_H-paniculata_contig13292.2058.1|Name=mRNA_H-paniculata_contig13292.2058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig13292:752..2330- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAATTCGCGCACCTTTCTGTTTCTGAGCTATGTGCAAGCACGCA
AGCTCTAGAGGAAGAGGCGCTGGGTGCGTTGATGAAGGACAATTCCTCCC
TCCTCGCCGATCTTACGCTTGCTCTCCGGGAAGCTCAACACCACAGCGAC
AGGGGACATTTCGTGCAGATGAAGGAATTCGCGCACCTTTCTGTTTCTGA
GCTATGTGCAAGCACGCAAGCTCTAGAGGAAGAGGCGCTGGGTGCGTTGA
TGAAGGACAATTCCTCCCTCCTCGCCGATCTTACGCTTGCTCTCCGGGAA
GCTCAACACCACAGCGACAGGGGACATTTCGTGCAGGGACACCTCACGCG
GTGCAAGGTCGAGCGTGACCATGCCAAGATCTTAGCCTCGAGACTGCAGG
AGGAAATTGGAGTCCTGAAGACCGAGCTAGATTCTGAGAAGCAAGCCAAC
ACTGGGGCGTCTGCTCAGGGACACCTCACGCGGTGCAAGGTCGAGCGTGA
CCATGCCAAGATCTTAGCCTCGAGACTGCAGGAGGAAATTGGAGTCCTGA
AGACCGAGCTAGATTCTGAGAAGCAAGCCAACACTGGGGCGTCTGCTCAG
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