mRNA_H-paniculata_contig13285.2056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13285.2056.1
Unique NamemRNA_H-paniculata_contig13285.2056.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13285.2056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13285contigH-paniculata_contig13285:4561..4985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size425
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.4460623-CDS-H-paniculata_contig13285:4560..49051622929052.4460623-CDS-H-paniculata_contig13285:4560..4905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13285 4561..4905 +
1691480713.1473882-CDS-H-paniculata_contig13285:4560..49051691480713.1473882-CDS-H-paniculata_contig13285:4560..4905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13285 4561..4905 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.4624388-UTR-H-paniculata_contig13285:4905..49851622929052.4624388-UTR-H-paniculata_contig13285:4905..4985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13285 4906..4985 +
1691480713.156123-UTR-H-paniculata_contig13285:4905..49851691480713.156123-UTR-H-paniculata_contig13285:4905..4985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13285 4906..4985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13285.2056.1prot_H-paniculata_contig13285.2056.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13285 4561..4905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13285.2056.1

>prot_H-paniculata_contig13285.2056.1 ID=prot_H-paniculata_contig13285.2056.1|Name=mRNA_H-paniculata_contig13285.2056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MHQDLKASGCFAAGVCRCWNFFAKGICFLLFATRLCTLCFLDVNIFPKTP
HHVIASFLAFCDHPIPSVCYFSILCFEVTARFSSNFAGTLISLLPSSERR
ILFTHYRDTTKLGF*
back to top

mRNA from alignment at H-paniculata_contig13285:4561..4985+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13285.2056.1 ID=mRNA_H-paniculata_contig13285.2056.1|Name=mRNA_H-paniculata_contig13285.2056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=425bp|location=Sequence derived from alignment at H-paniculata_contig13285:4561..4985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCAAGACCTCAAGGCGAGTGGATGTTTCGCCGCTGGGGTGTGTAG
GTGCTGGAATTTTTTTGCCAAGGGTATTTGTTTTCTGTTATTTGCTACGA
GACTGTGTACGCTGTGCTTCCTAGACGTGAATATTTTCCCCAAGACACCA
CACCACGTTATTGCTTCCTTTCTAGCTTTCTGCGACCACCCAATTCCGTC
TGTATGCTATTTTTCGATTTTGTGTTTTGAGGTGACAGCACGATTTTCCT
CGAACTTCGCCGGGACTCTAATCTCTCTGCTGCCGTCATCTGAACGTCGA
ATATTGTTTACGCATTATCGCGATACTACGAAACTTGGCTTCTAGTAGAA
ATACTTGAATTAATCAATACGAATAAAAATGTGACCATGCGATCCAAGCG
TCCAAGGTTAGTGCCTGAAGGAAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig13285:4561..4985+

>mRNA_H-paniculata_contig13285.2056.1 ID=mRNA_H-paniculata_contig13285.2056.1|Name=mRNA_H-paniculata_contig13285.2056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig13285:4561..4985+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCAAGACCTCAAGGCGAGTGGATGTTTCGCCGCTGGGGTGTGTAG
GTGCTGGAATTTTTTTGCCAAGGGTATTTGTTTTCTGTTATTTGCTACGA
GACTGTGTACGCTGTGCTTCCTAGACGTGAATATTTTCCCCAAGACACCA
CACCACGTTATTGCTTCCTTTCTAGCTTTCTGCGACCACCCAATTCCGTC
TGTATGCTATTTTTCGATTTTGTGTTTTGAGGTGACAGCACGATTTTCCT
CGAACTTCGCCGGGACTCTAATCTCTCTGCTGCCGTCATCTGAACGTCGA
ATATTGTTTACGCATTATCGCGATACTACGAAACTTGGCTTCTAGATGCA
TCAAGACCTCAAGGCGAGTGGATGTTTCGCCGCTGGGGTGTGTAGGTGCT
GGAATTTTTTTGCCAAGGGTATTTGTTTTCTGTTATTTGCTACGAGACTG
TGTACGCTGTGCTTCCTAGACGTGAATATTTTCCCCAAGACACCACACCA
CGTTATTGCTTCCTTTCTAGCTTTCTGCGACCACCCAATTCCGTCTGTAT
GCTATTTTTCGATTTTGTGTTTTGAGGTGACAGCACGATTTTCCTCGAAC
TTCGCCGGGACTCTAATCTCTCTGCTGCCGTCATCTGAACGTCGAATATT
GTTTACGCATTATCGCGATACTACGAAACTTGGCTTCTAG
back to top