mRNA_H-paniculata_contig13269.2041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13269.2041.1
Unique NamemRNA_H-paniculata_contig13269.2041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13269.2041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13269contigH-paniculata_contig13269:3361..4051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size691
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13269.2041.1prot_H-paniculata_contig13269.2041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13269 3369..3848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.1696665-UTR-H-paniculata_contig13269:3360..33681622929050.1696665-UTR-H-paniculata_contig13269:3360..3368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13269 3361..3368 +
1691480712.4484053-UTR-H-paniculata_contig13269:3360..33681691480712.4484053-UTR-H-paniculata_contig13269:3360..3368Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13269 3361..3368 +
1622929050.2117755-UTR-H-paniculata_contig13269:3848..40511622929050.2117755-UTR-H-paniculata_contig13269:3848..4051Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13269 3849..4051 +
1691480712.468567-UTR-H-paniculata_contig13269:3848..40511691480712.468567-UTR-H-paniculata_contig13269:3848..4051Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13269 3849..4051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.1936707-CDS-H-paniculata_contig13269:3368..38481622929050.1936707-CDS-H-paniculata_contig13269:3368..3848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13269 3369..3848 +
1691480712.458231-CDS-H-paniculata_contig13269:3368..38481691480712.458231-CDS-H-paniculata_contig13269:3368..3848Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13269 3369..3848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13269.2041.1

>prot_H-paniculata_contig13269.2041.1 ID=prot_H-paniculata_contig13269.2041.1|Name=mRNA_H-paniculata_contig13269.2041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MASRWSTRPQADMTGSSAIGDKTYTEAATPQLAHATPNLYVNLPNSCNAA
QWIRSEKATASISRSEKVIDILCDEHATRIVGLYSNDWYLGEVAITSVRV
TEDINKYRAKYFGLAHEGNKSPSVILCRLESPPRYDSIEFDSASCGLKIL
DGIVRETEA*
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mRNA from alignment at H-paniculata_contig13269:3361..4051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13269.2041.1 ID=mRNA_H-paniculata_contig13269.2041.1|Name=mRNA_H-paniculata_contig13269.2041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=691bp|location=Sequence derived from alignment at H-paniculata_contig13269:3361..4051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGTCATGGCATCGAGGTGGAGCACACGGCCACAGGCAGACATGACC
GGTAGTTCAGCGATCGGCGATAAAACCTACACCGAAGCGGCAACGCCACA
ACTGGCTCACGCGACGCCGAATCTGTACGTGAACTTGCCGAACAGTTGTA
ACGCCGCCCAATGGATTAGGTCTGAGAAGGCCACGGCAAGTATTAGTAGG
TCAGAGAAGGTTATTGATATATTATGTGATGAACATGCTACGCGAATTGT
AGGATTATACTCCAACGATTGGTATCTAGGGGAAGTGGCCATTACTTCCG
TGCGTGTGACTGAGGATATTAACAAATACCGGGCAAAATACTTCGGGCTA
GCTCACGAGGGAAATAAATCTCCGAGTGTGATACTGTGCCGACTGGAAAG
TCCACCGCGGTATGATTCGATCGAATTTGATTCAGCAAGCTGTGGATTAA
AAATTTTAGACGGGATCGTTCGAGAAACCGAAGCTTGAGAGTGCACACTA
GCTTGGCAACTGAGGAAAATGGCCAAGACGGCAGTTTCCAGTAAAGGTGA
AGTCAAGACGAAGGGATCGCAGGAAGAAGCTGCGGGCGCCCAGGAGCTAC
AACCGGAGGCACATCAGGTATGGATGACCGACGGGGGCCCCGGCTCCAAA
ACACAGCGGTTACGACGACAGAGGCCTACGCAACATATAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig13269:3361..4051+

>mRNA_H-paniculata_contig13269.2041.1 ID=mRNA_H-paniculata_contig13269.2041.1|Name=mRNA_H-paniculata_contig13269.2041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig13269:3361..4051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCGAGGTGGAGCACACGGCCACAGGCAGACATGACCGGTAGTTC
AGCGATCGGCGATAAAACCTACACCGAAGCGGCAACGCCACAACTGGCTC
ACGCGACGCCGAATCTGTACGTGAACTTGCCGAACAGTTGTAACGCCGCC
CAATGGATTAGGTCTGAGAAGGCCACGGCAAGTATTAGTAGGTCAGAGAA
GGTTATTGATATATTATGTGATGAACATGCTACGCGAATTGTAGGATTAT
ACTCCAACGATTGGTATCTAGGGGAAGTGGCCATTACTTCCGTGCGTGTG
ACTGAGGATATTAACAAATACCGGGCAAAATACTTCGGGCTAGCTCACGA
GGGAAATAAATCTCCGAGTGTGATACTGTGCCGACTGGAAAGTCCACCGC
GGTATGATTCGATCGAATTTGATTCAGCAAGCTGTGGATTAAAAATTTTA
GACGGGATCGTTCGAGAAACCGAAGCTTGAATGGCATCGAGGTGGAGCAC
ACGGCCACAGGCAGACATGACCGGTAGTTCAGCGATCGGCGATAAAACCT
ACACCGAAGCGGCAACGCCACAACTGGCTCACGCGACGCCGAATCTGTAC
GTGAACTTGCCGAACAGTTGTAACGCCGCCCAATGGATTAGGTCTGAGAA
GGCCACGGCAAGTATTAGTAGGTCAGAGAAGGTTATTGATATATTATGTG
ATGAACATGCTACGCGAATTGTAGGATTATACTCCAACGATTGGTATCTA
GGGGAAGTGGCCATTACTTCCGTGCGTGTGACTGAGGATATTAACAAATA
CCGGGCAAAATACTTCGGGCTAGCTCACGAGGGAAATAAATCTCCGAGTG
TGATACTGTGCCGACTGGAAAGTCCACCGCGGTATGATTCGATCGAATTT
GATTCAGCAAGCTGTGGATTAAAAATTTTAGACGGGATCGTTCGAGAAAC
CGAAGCTTGA
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