mRNA_H-paniculata_contig1323.2025.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1323.2025.1
Unique NamemRNA_H-paniculata_contig1323.2025.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1323.2025.1 vs. uniprot
Match: A0A6H5JE47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE47_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.160e-28
Identity = 60/85 (70.59%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   61 KRVREDAKKWIYVHWHTPASLRRGDYCR----GPFTPDFVKREGTKSGGWAPFVTKIRKSSVVVTCASLLASRCIPAECLKELGV 303
            K  R D  +WI+VHWHTPASLRR DYCR    GPFTPDFVK+ G KSG + PFVTKIRKSSVVV+C  LL+SRCIP   LKELGV
Sbjct: 1693 KPDRGDEGRWIFVHWHTPASLRRLDYCRPPDRGPFTPDFVKKGGGKSG-YDPFVTKIRKSSVVVSCEGLLSSRCIPERVLKELGV 1776
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1323.2025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JE47_9PHAE2.160e-2870.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1323contigH-paniculata_contig1323:3941..4993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size320
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1323.2025.1prot_H-paniculata_contig1323.2025.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1323 3955..4993 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.8896534-UTR-H-paniculata_contig1323:3940..39541622929047.8896534-UTR-H-paniculata_contig1323:3940..3954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1323 3941..3954 -
1691480711.5354393-UTR-H-paniculata_contig1323:3940..39541691480711.5354393-UTR-H-paniculata_contig1323:3940..3954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1323 3941..3954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.9072335-CDS-H-paniculata_contig1323:3954..41171622929047.9072335-CDS-H-paniculata_contig1323:3954..4117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1323 3955..4117 -
1691480711.54834-CDS-H-paniculata_contig1323:3954..41171691480711.54834-CDS-H-paniculata_contig1323:3954..4117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1323 3955..4117 -
1622929047.9219763-CDS-H-paniculata_contig1323:4850..49931622929047.9219763-CDS-H-paniculata_contig1323:4850..4993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1323 4851..4993 -
1691480711.5680344-CDS-H-paniculata_contig1323:4850..49931691480711.5680344-CDS-H-paniculata_contig1323:4850..4993Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1323 4851..4993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1323.2025.1

>prot_H-paniculata_contig1323.2025.1 ID=prot_H-paniculata_contig1323.2025.1|Name=mRNA_H-paniculata_contig1323.2025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
AGARGGADVKGGEVEEAEEQKRVREDAKKWIYVHWHTPASLRRGDYCRGP
FTPDFVKREGTKSGGWAPFVTKIRKSSVVVTCASLLASRCIPAECLKELG
V*
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mRNA from alignment at H-paniculata_contig1323:3941..4993-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1323.2025.1 ID=mRNA_H-paniculata_contig1323.2025.1|Name=mRNA_H-paniculata_contig1323.2025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1053bp|location=Sequence derived from alignment at H-paniculata_contig1323:3941..4993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGGGCGAGGGGCGGGGCGGATGTCAAGGGTGGAGAGGTGGAGGAAGC
AGAGGAACAGAAGCGCGTGAGAGAGGACGCGAAGAAGTGGATCTATGTGC
ATTGGCATACTCCGGCTAGTCTACGGCGAGGCGACTACTGTAGGTGAGGA
GAGAAAATAAGAGTGGGGGGGACGGGGGACGTGAGCCCGGCAGGGCTTGG
AGGGGTGGTGGGGGGCGTTAGGGTGGCTGGAAGAACAGTGGACGTGATTT
TTTTTTTTTTCATCGCCACGTAATGAGTTCTTATCATTCTTTTCTTTCCG
TATGGTAATCTGTTGAAATAGTTTCAGGTATGATGTGTGTGTCCCAGGTG
TTTTTTTATATTAATTTATGAATCTCCTTGAAAGAGCAGGTGCGGTGTAC
GTGTTGAGGGGGAGGGGGGGGGGGAGGCATGTAGATATATATCAGCCGAA
CGCGTTGAGCTGGCTGTGTGAAATGAAAGGAAGAAAAATCAGATCAATAC
CCTCCTTCGTATCTACGCCCCAAGCGCCTCTTCCCTGAAATTTTGACGTG
AAATTTATTAACACTGCAGTAGGATTATCTCTCTTTTGTAAAATCACACG
GATGTCCAAATTCCGCACCTTTGTTGTTGATACTCCCCCACCAAATATCC
TAAAATTTCTAGAAAAAAAAAAAGGATCATAACTTTGACCGGCGTTCGTC
CTATTTTATCTGTTAATTTCTTATTTGTTATCAACCTTGGCATGCTGCTG
CACACGATCACACCCTAACTTTCGCGATATCTCAGTCAGCCAGTGCTTTA
ATAAAAAATAATGTGCATGTACTTCTACGCTCCCCTCCTTACCCCACTCG
ATTGTCCATCGCTCGGTTCCGGATAGGGGCCCGTTCACGCCTGATTTCGT
AAAGAGAGAGGGCACCAAATCCGGTGGGTGGGCTCCGTTCGTCACAAAGA
TTCGGAAGTCCTCGGTTGTCGTCACGTGCGCGAGTCTGCTCGCGAGTCGC
TGTATTCCGGCTGAGTGCCTGAAGGAGCTCGGGGTGTGAAGTCAAGCGCG
CGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1323:3941..4993-

>mRNA_H-paniculata_contig1323.2025.1 ID=mRNA_H-paniculata_contig1323.2025.1|Name=mRNA_H-paniculata_contig1323.2025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig1323:3941..4993- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGGGCGAGGGGCGGGGCGGATGTCAAGGGTGGAGAGGTGGAGGAAGC
AGAGGAACAGAAGCGCGTGAGAGAGGACGCGAAGAAGTGGATCTATGTGC
ATTGGCATACTCCGGCTAGTCTACGGCGAGGCGACTACTGTAGGCAGGGG
CGAGGGGCGGGGCGGATGTCAAGGGTGGAGAGGTGGAGGAAGCAGAGGAA
CAGAAGCGCGTGAGAGAGGACGCGAAGAAGTGGATCTATGTGCATTGGCA
TACTCCGGCTAGTCTACGGCGAGGCGACTACTGTAGGGGCCCGTTCACGC
CTGATTTCGTAAAGAGAGAGGGCACCAAATCCGGTGGGTGGGCTCCGTTC
GTCACAAAGATTCGGAAGTCCTCGGTTGTCGTCACGTGCGCGAGTCTGCT
CGCGAGTCGCTGTATTCCGGCTGAGTGCCTGAAGGAGCTCGGGGTGTGAG
GGCCCGTTCACGCCTGATTTCGTAAAGAGAGAGGGCACCAAATCCGGTGG
GTGGGCTCCGTTCGTCACAAAGATTCGGAAGTCCTCGGTTGTCGTCACGT
GCGCGAGTCTGCTCGCGAGTCGCTGTATTCCGGCTGAGTGCCTGAAGGAG
CTCGGGGTGTGA
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