mRNA_H-paniculata_contig13224.2023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13224.2023.1
Unique NamemRNA_H-paniculata_contig13224.2023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 5.560e-51
Identity = 84/102 (82.35%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLRDEVITKKAPQQFLRSYLAQVIKPCYLTLAEQYEDAGAGSKPYMIKNYDDFNETFWVRSCLKLDIVGLTQDALRRKFTKT 306
            AANLRLCPEFLCWAYHKSAKRLRD  I  +AP+QF+RSYL +VI+PCYLTLAEQYED  AGS+PYM+KNYDDFNETFW RSCL LD+VGLTQDA+RRKFTKT
Sbjct:  273 AANLRLCPEFLCWAYHKSAKRLRD-AIGDRAPEQFIRSYLKEVIQPCYLTLAEQYEDRKAGSRPYMVKNYDDFNETFWQRSCLGLDVVGLTQDAVRRKFTKT 373          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: A0A6H5L4T6_9PHAE (FKS1_dom1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T6_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.170e-50
Identity = 83/126 (65.87%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLRDEVITKKAPQQFLR------------------------SYLAQVIKPCYLTLAEQYEDAGAGSKPYMIKNYDDFNETFWVRSCLKLDIVGLTQDALRRKFTKT 306
            AANLRLCPEFLCWAYHKSAKRLRD  I  +AP+QF+R                        SYL +VI+PCYLTLAEQYED  AGS+PY++KNYDDFNETFW RSCL LD+VGLTQDA+RRKFTKT
Sbjct:   19 AANLRLCPEFLCWAYHKSAKRLRD-AIGDRAPEQFIRHAAYDRLLQRQLGSTRESAPQGIRSYLKEVIQPCYLTLAEQYEDRKAGSRPYLVKNYDDFNETFWQRSCLGLDVVGLTQDAVRRKFTKT 143          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: D7FPK0_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK0_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.500e-19
Identity = 50/104 (48.08%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLRDEVITKKAPQQFLRSYLAQVIKPCYLTLAEQYEDAGAGSKPYM-IKNYDDFNETFWVRSCLKLDIVGLTQD-ALRRKFTKT 306
            A NLR CPEFLC+ YHK +   R  VI  K+P   + SYL +VI P Y  LAEQ    G G   +  ++NYDDFNE FW   CLKL I  + +   L++KF KT
Sbjct:  212 AGNLRFCPEFLCFLYHKMSHTFRT-VIEGKSPDITVPSYLDEVITPAYSLLAEQLSKIGHGVIDHSSVRNYDDFNEIFWQEECLKLTIATMFEGKTLKKKFQKT 314          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: A0A7N0R990_KALFE (1,3-beta-glucan synthase n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0R990_KALFE)

HSP 1 Score: 68.9 bits (167), Expect = 1.930e-11
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLR---DEVITKKAPQQFL------RSYLAQVIKPCYLTLAEQYEDAGAGSKPYMI-KNYDDFNETFWVRSCLK 252
            AANLR  PE LC+ +H  A  +    +E I +   + ++       ++L  V+KP Y T+  + E  G GSKP+   +NYDD NE FW R CLK
Sbjct:  179 AANLRFLPECLCYIFHHMAMEMNQVLEEHIDENTGRPYVPYYRGDNAFLRLVVKPIYNTIKNEVESGGNGSKPHSAWRNYDDMNEYFWSRRCLK 272          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: A0A835E832_9POAL (1,3-beta-glucan synthase n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835E832_9POAL)

HSP 1 Score: 67.8 bits (164), Expect = 4.880e-11
Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLRDEVITKKAP-------QQFLRSYLAQVIKPCYLTLAEQYEDAGAGSKPYMI-KNYDDFNETFWVRSCLKL------DIVGLTQDALRRKFTKT 306
            AAN+R  PE LC+ +H  AK L   + + +A             SYL ++IKP Y T+A +  +   G+  +   +NYDDFNE FW RSC +L      D   L + A R++  KT
Sbjct:  368 AANVRFLPECLCYIFHNMAKELDGILDSSEAEPAKSCITSDRSTSYLERIIKPIYETMAAEANNNNGGTAAHSAWRNYDDFNEYFWSRSCFQLGWPPAEDSKFLRKPAKRKRTGKT 483          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: A0A251VQ24_HELAN (1,3-beta-glucan synthase n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251VQ24_HELAN)

HSP 1 Score: 66.2 bits (160), Expect = 1.710e-10
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLRDEVITKKAPQQFLR-------SYLAQVIKPCYLTLAEQYEDAGAGSKPYMI-KNYDDFNETFWVRSCLKL 255
            AAN+R  PE LC+ +H+  + L DE++ ++  +           S+L QVI P Y  +A +  +   G  P+   +NYDDFNE FW RSCLKL
Sbjct:  307 AANVRFLPECLCYIFHRMGEEL-DEILHQQLAKPAASCVTENGVSFLEQVICPLYNVIAAEANNNENGKAPHSAWRNYDDFNEYFWSRSCLKL 398          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: A0A2U1PLY0_ARTAN (1,3-beta-glucan synthase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PLY0_ARTAN)

HSP 1 Score: 65.9 bits (159), Expect = 2.330e-10
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLRD---EVITKKAPQQFLR---SYLAQVIKPCYLTLAEQYEDAGAGSKPYMI-KNYDDFNETFWVRSCLKL 255
            AAN R  PE LC+ +H+  + + D   E + K A         S+L QV+ P Y  +A +  +   G  P+   +NYDDFNE FW RSCLKL
Sbjct:  360 AANARFLPECLCYIFHRMGEEMEDMLKEQLAKPAVSCVTENGVSFLEQVVCPLYDVIAAEAANNNDGKAPHSAWRNYDDFNEYFWSRSCLKL 451          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: A0A811MU58_9POAL (1,3-beta-glucan synthase n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811MU58_9POAL)

HSP 1 Score: 65.5 bits (158), Expect = 3.180e-10
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRL------RDEVITKKAPQQFLRSYLAQVIKPCYLTLAEQYEDAGAGSKPYMI-KNYDDFNETFWVRSCLKL 255
            AAN+R  PE +C+ +H  AK L       D    K    +   S+L ++I P Y T+AE+  +   G   +   +NYDDFNE FW RSC +L
Sbjct:  332 AANVRFLPECICYIFHNMAKELDGILDSSDAETAKSCTSEGSTSFLERIITPIYDTMAEEAANNKNGKAAHSAWRNYDDFNEYFWSRSCFEL 423          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: A0A811MHC7_9POAL (1,3-beta-glucan synthase n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811MHC7_9POAL)

HSP 1 Score: 65.5 bits (158), Expect = 3.190e-10
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRL------RDEVITKKAPQQFLRSYLAQVIKPCYLTLAEQYEDAGAGSKPYMI-KNYDDFNETFWVRSCLKL 255
            AAN+R  PE +C+ +H  AK L       D    K    +   S+L ++I P Y T+A + E+   G   +   +NYDDFNE FW RSC +L
Sbjct:  372 AANVRFLPECICYIFHNMAKELDGILDSSDAETAKSCTSEGSTSFLERIITPIYDTMAAEAENNKNGKAAHSAWRNYDDFNEYFWSRSCFEL 463          
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Match: UPI001CB97C31 (callose synthase 9 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB97C31)

HSP 1 Score: 65.1 bits (157), Expect = 4.350e-10
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 AANLRLCPEFLCWAYHKSAKRLRDEVITKKAPQQFLR-------SYLAQVIKPCYLTLAEQYEDAGAGSKPYMI-KNYDDFNETFWVRSCLKL 255
            AAN+R  PE LC+ +H+  + + D+++ ++  +  +        S+L QVI P Y  +A + ++   G  P+   +NYDDFNE FW RSCLKL
Sbjct:  365 AANVRYLPECLCYIFHRMGEEV-DDILRQQLAKPAVSCVTENGVSFLEQVICPLYDVIAAEADNNENGKAPHSAWRNYDDFNEYFWSRSCLKL 456          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13224.2023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXN7_ECTSI5.560e-5182.351,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L4T6_9PHAE1.170e-5065.87FKS1_dom1 domain-containing protein n=1 Tax=Ectoca... [more]
D7FPK0_ECTSI1.500e-1948.081,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A7N0R990_KALFE1.930e-1139.361,3-beta-glucan synthase n=1 Tax=Kalanchoe fedtsch... [more]
A0A835E832_9POAL4.880e-1136.211,3-beta-glucan synthase n=2 Tax=Digitaria exilis ... [more]
A0A251VQ24_HELAN1.710e-1039.781,3-beta-glucan synthase n=2 Tax=Helianthus annuus... [more]
A0A2U1PLY0_ARTAN2.330e-1040.221,3-beta-glucan synthase n=1 Tax=Artemisia annua T... [more]
A0A811MU58_9POAL3.180e-1038.041,3-beta-glucan synthase n=1 Tax=Miscanthus lutari... [more]
A0A811MHC7_9POAL3.190e-1038.041,3-beta-glucan synthase n=1 Tax=Miscanthus lutari... [more]
UPI001CB97C314.350e-1037.63callose synthase 9 n=1 Tax=Erigeron canadensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13224contigH-paniculata_contig13224:4833..5524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.8
Seed ortholog evalue1.6e-43
Seed eggNOG ortholog2880.D7FXN7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
Ec32 ortholog description1,3-beta-glucan synthase, family GT48
Ec32 orthologEc-28_002440.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.7585359-CDS-H-paniculata_contig13224:4832..49421622929047.7585359-CDS-H-paniculata_contig13224:4832..4942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 4833..4942 +
1691480711.481407-CDS-H-paniculata_contig13224:4832..49421691480711.481407-CDS-H-paniculata_contig13224:4832..4942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 4833..4942 +
1622929047.7721581-CDS-H-paniculata_contig13224:5327..55231622929047.7721581-CDS-H-paniculata_contig13224:5327..5523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 5328..5523 +
1691480711.4933116-CDS-H-paniculata_contig13224:5327..55231691480711.4933116-CDS-H-paniculata_contig13224:5327..5523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13224 5328..5523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13224.2023.1prot_H-paniculata_contig13224.2023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13224 4833..5523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13224.2023.1

>prot_H-paniculata_contig13224.2023.1 ID=prot_H-paniculata_contig13224.2023.1|Name=mRNA_H-paniculata_contig13224.2023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
AANLRLCPEFLCWAYHKSAKRLRDEVITKKAPQQFLRSYLAQVIKPCYLT
LAEQYEDAGAGSKPYMIKNYDDFNETFWVRSCLKLDIVGLTQDALRRKFT
KT
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mRNA from alignment at H-paniculata_contig13224:4833..5524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13224.2023.1 ID=mRNA_H-paniculata_contig13224.2023.1|Name=mRNA_H-paniculata_contig13224.2023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=692bp|location=Sequence derived from alignment at H-paniculata_contig13224:4833..5524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGAACCTTCGACTGTGTCCTGAGTTTCTGTGCTGGGCTTACCACAA GAGCGCTAAGAGGCTGAGGGATGAGGTCATCACCAAAAAAGCTCCGCAGC AATTCCTCAGGTACGTTTTCCACATTGTTCGATGCTAAACTAAGGTAAAA CAACAACAATACGGCAGAGAGCTAAGGACACGCCAAAAGTGGACAGTGGC ATCGAGTTTCAGCCTGGCGTAAAATTCAGGCCGTGGCTTTCTCAGCAGCC GTACACAGTTGAAGGTATTAGTAGTGCCTACTTAACTAGCCCTAGTCTTA AGTGATATGCATTAAACTGTGTTTCCAAGCGTATAATGCACTACTCCTTG TACTCCTTCAAAGACCAATGGGAATCGAAACATTCCTAGGAGCGAAAGAC GGTCCAACATGTCAATATCGAATAGTAAGGTTGTTTCGTGCTCTTCACCG ATGCTCGTCCCATCCGATGTGTGATGCAATCGATACGTGCGGTAGGTCGT ATCTCGCACAGGTGATCAAGCCGTGCTATCTGACCCTAGCGGAGCAGTAT GAGGACGCCGGAGCGGGCTCGAAGCCATACATGATCAAGAACTACGACGA CTTCAACGAGACGTTCTGGGTGCGATCGTGTCTAAAGCTAGACATCGTGG GTCTGACCCAGGACGCGCTGAGGAGGAAGTTTACCAAAACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig13224:4833..5524+

>mRNA_H-paniculata_contig13224.2023.1 ID=mRNA_H-paniculata_contig13224.2023.1|Name=mRNA_H-paniculata_contig13224.2023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig13224:4833..5524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCGAACCTTCGACTGTGTCCTGAGTTTCTGTGCTGGGCTTACCACAA
GAGCGCTAAGAGGCTGAGGGATGAGGTCATCACCAAAAAAGCTCCGCAGC
AATTCCTCAGGCCGCGAACCTTCGACTGTGTCCTGAGTTTCTGTGCTGGG
CTTACCACAAGAGCGCTAAGAGGCTGAGGGATGAGGTCATCACCAAAAAA
GCTCCGCAGCAATTCCTCAGGTCGTATCTCGCACAGGTGATCAAGCCGTG
CTATCTGACCCTAGCGGAGCAGTATGAGGACGCCGGAGCGGGCTCGAAGC
CATACATGATCAAGAACTACGACGACTTCAACGAGACGTTCTGGGTGCGA
TCGTGTCTAAAGCTAGACATCGTGGGTCTGACCCAGGACGCGCTGAGGAG
GAAGTTTACCAAAACGGTCGTATCTCGCACAGGTGATCAAGCCGTGCTAT
CTGACCCTAGCGGAGCAGTATGAGGACGCCGGAGCGGGCTCGAAGCCATA
CATGATCAAGAACTACGACGACTTCAACGAGACGTTCTGGGTGCGATCGT
GTCTAAAGCTAGACATCGTGGGTCTGACCCAGGACGCGCTGAGGAGGAAG
TTTACCAAAACG
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