mRNA_H-paniculata_contig13211.2015.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13211.2015.1
Unique NamemRNA_H-paniculata_contig13211.2015.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig13211.2015.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 6.710e-17
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 2 
Query:  137 CDYCAAACTGGGSIDVDVSNERPIPVLDGFGFVLVGSVYAAVVACSLAVLCWR 295
            CDYC  AC+GGGSIDVDVS++ PIPVLDGFG  LVG VYAAVVACSLA+  WR
Sbjct:  345 CDYCVQACSGGGSIDVDVSDKNPIPVLDGFGVGLVGGVYAAVVACSLALFWWR 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13211.2015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMI8_ECTSI6.710e-1777.36NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13211contigH-paniculata_contig13211:1263..2690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.8e-15
Seed eggNOG ortholog2880.D7FMI8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Niemann-Pick C1 N terminus
EggNOG OGs28I52@1,2QQFF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size593
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13211.2015.1prot_H-paniculata_contig13211.2015.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13211 1459..2647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929046.6858096-UTR-H-paniculata_contig13211:1262..14581622929046.6858096-UTR-H-paniculata_contig13211:1262..1458Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13211 1263..1458 -
1691480711.0585542-UTR-H-paniculata_contig13211:1262..14581691480711.0585542-UTR-H-paniculata_contig13211:1262..1458Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13211 1263..1458 -
1622929046.755201-UTR-H-paniculata_contig13211:2647..26901622929046.755201-UTR-H-paniculata_contig13211:2647..2690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13211 2648..2690 -
1691480711.0895329-UTR-H-paniculata_contig13211:2647..26901691480711.0895329-UTR-H-paniculata_contig13211:2647..2690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig13211 2648..2690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929046.701979-CDS-H-paniculata_contig13211:1458..16171622929046.701979-CDS-H-paniculata_contig13211:1458..1617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13211 1459..1617 -
1691480711.0673347-CDS-H-paniculata_contig13211:1458..16171691480711.0673347-CDS-H-paniculata_contig13211:1458..1617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13211 1459..1617 -
1622929046.7246754-CDS-H-paniculata_contig13211:2125..22281622929046.7246754-CDS-H-paniculata_contig13211:2125..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13211 2126..2228 -
1691480711.0747874-CDS-H-paniculata_contig13211:2125..22281691480711.0747874-CDS-H-paniculata_contig13211:2125..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13211 2126..2228 -
1622929046.7397835-CDS-H-paniculata_contig13211:2555..26471622929046.7397835-CDS-H-paniculata_contig13211:2555..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13211 2556..2647 -
1691480711.0821416-CDS-H-paniculata_contig13211:2555..26471691480711.0821416-CDS-H-paniculata_contig13211:2555..2647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13211 2556..2647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13211.2015.1

>prot_H-paniculata_contig13211.2015.1 ID=prot_H-paniculata_contig13211.2015.1|Name=mRNA_H-paniculata_contig13211.2015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MLEVDHDDHHHLHHHHHHHHHHHHHHHTHSMCDYCAAACTGGGSIDVDVS
NERPIPVLDGFGFVLVGSVYAAVVACSLAVLCWRISPSGHNVIHRKATSK
TRSNNSNGQVRDFFAYY*
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mRNA from alignment at H-paniculata_contig13211:1263..2690-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13211.2015.1 ID=mRNA_H-paniculata_contig13211.2015.1|Name=mRNA_H-paniculata_contig13211.2015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig13211:1263..2690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTATTTCCTGCAGGTGAGAAAATAGTCAATACTCGATACTGAATGCTGG
AAGTGGATCATGATGATCATCACCATCTTCATCATCATCATCATCATCAT
CACCATCATCATCATCATCATCATACTCACTCCATGTACGAATCTAGCAG
GTCGTGTTTATATCAATGAGTAGTTGACTTCTTCGTTTTGTATGTGTATT
TTGAACTCGAATCGGGTGTTGATCCGTAATCGTGCTATATTGCATGCAGT
AGATTGCACAATTGAATAGCTGCTGTTTATTGCTGCGTGCATCTAATCTC
TCTTGCTCTTCTTAGCAAAAGATTTACTACAATATAATTTCGCATAGCAG
CAGTCACAGGCTCGGTAGCCTCCTGACTTCCTGAAGACGTAGCAGTATTA
ATGTCGATTTCACGGGGATGTCAACGATATTGATTGTCAGTACGATGCCT
ATTATGGTTCAGGTGTGACTACTGTGCGGCCGCGTGCACTGGCGGAGGTT
CGATCGACGTTGACGTGAGCAACGAAAGACCCATTCCAGTGTTGGATGGT
TTCGGTTTTGTGTTGGTGAGTTTTTGACATTTTTACTTGGGGCATCGTGG
GTGCTGACGATTGGTATGGCATTTTCATATTATCACGACTTGAAAAATTA
TATGCATTGCTCGTCGTGGCGCTTGCTTACTGGAGATGTGACTTACAAGA
TAATCGTCAACTTACCGTTAACTGTCGTGTTCTATTTACGTGTAGCCTGC
TATAGCTCAAAATCTTGCGCGGCTGAACTGTGTGACCTCCTCTTTTCTTC
GTCATAGTTCGTCTTGGTGGTTTTTTTTCTACTTGAGTATAGTAGTATTC
GATTGGTGTGTACGGTTTCAAAACATGCAAATGGTTCGTCGCTTTGTGGG
GCTGCCAAAATCGCTTACACTGTGGGGGTATATCTTTTATCTTCTACCCA
TTTCTTTGCCATGTTGATGCGGTTCTTGATTCTGGCTGCCCTTTTCTTGG
CATCTTATTTTGCGTCAATGACATTTTGTTTCTCGTTTTGATCTGATTCT
GTGTGCCATCGCTGTTTGAATAGGTGGGGAGTGTGTATGCAGCGGTTGTA
GCGTGCAGCTTGGCCGTTTTATGCTGGCGGATAAGTCCATCTGGGCATAA
CGTGATCCATCGCAAGGCAACATCGAAAACAAGAAGTAACAACAGCAACG
GACAAGTTCGAGATTTCTTCGCCTACTACTGACGCACTTGATCCAAGTCA
TGCGTAATGCGCAGGCAGTGTCGAACCTGGCAGCGTACATACTGCAGGAA
CGGAGGTGGCATTAAAAAATTGTACATACATCCACTGTCGAACCAACCGT
GAAGACGCTCCCTCGGAAAAGCGTGTATATAAGAACAAAAATACTGTTAT
TCATTCGCTCATGACCCACCCTCCCGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig13211:1263..2690-

>mRNA_H-paniculata_contig13211.2015.1 ID=mRNA_H-paniculata_contig13211.2015.1|Name=mRNA_H-paniculata_contig13211.2015.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig13211:1263..2690- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGAAGTGGATCATGATGATCATCACCATCTTCATCATCATCATCA
TCATCATCACCATCATCATCATCATCATCATACTCACTCCATATGCTGGA
AGTGGATCATGATGATCATCACCATCTTCATCATCATCATCATCATCATC
ACCATCATCATCATCATCATCATACTCACTCCATGTGTGACTACTGTGCG
GCCGCGTGCACTGGCGGAGGTTCGATCGACGTTGACGTGAGCAACGAAAG
ACCCATTCCAGTGTTGGATGGTTTCGGTTTTGTGTTGGTGTGACTACTGT
GCGGCCGCGTGCACTGGCGGAGGTTCGATCGACGTTGACGTGAGCAACGA
AAGACCCATTCCAGTGTTGGATGGTTTCGGTTTTGTGTTGGTGGGGAGTG
TGTATGCAGCGGTTGTAGCGTGCAGCTTGGCCGTTTTATGCTGGCGGATA
AGTCCATCTGGGCATAACGTGATCCATCGCAAGGCAACATCGAAAACAAG
AAGTAACAACAGCAACGGACAAGTTCGAGATTTCTTCGCCTACTACTGAG
TGGGGAGTGTGTATGCAGCGGTTGTAGCGTGCAGCTTGGCCGTTTTATGC
TGGCGGATAAGTCCATCTGGGCATAACGTGATCCATCGCAAGGCAACATC
GAAAACAAGAAGTAACAACAGCAACGGACAAGTTCGAGATTTCTTCGCCT
ACTACTGA
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