mRNA_H-paniculata_contig1321.2014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1321.2014.1
Unique NamemRNA_H-paniculata_contig1321.2014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: V8M0T5_STRTR (Uncharacterized protein n=2 Tax=Bacilli TaxID=91061 RepID=V8M0T5_STRTR)

HSP 1 Score: 59.3 bits (142), Expect = 4.020e-11
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC 105
            MAKA L   TDAE RKRGERTG +TLVVHAVNDEC
Sbjct:    1 MAKAALWSVTDAEARKRGERTGLDTLVVHAVNDEC 35
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A381MYC0_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381MYC0_9ZZZZ)

HSP 1 Score: 58.9 bits (141), Expect = 7.050e-11
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDE 102
            MAKA    DTD EGRKRGERTG +TLVVHAVNDE
Sbjct:    1 MAKAAFWLDTDTEGRKRGERTGLDTLVVHAVNDE 34
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A0D6B8G7_RHOSU (Uncharacterized protein n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A0D6B8G7_RHOSU)

HSP 1 Score: 58.2 bits (139), Expect = 2.250e-10
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC 105
            MAKA    DTDAE RKRGE+TG +TLVVHAVNDEC
Sbjct:    1 MAKAAHWLDTDAEVRKRGEQTGLDTLVVHAVNDEC 35
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A0F9VZV7_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9VZV7_9ZZZZ)

HSP 1 Score: 58.2 bits (139), Expect = 2.250e-10
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC 105
            MAKA    DTDAE RKRGE+TG +TLVVHAVNDEC
Sbjct:    1 MAKAAPWIDTDAEVRKRGEQTGLDTLVVHAVNDEC 35
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A140KZ97_9CLOT (Uncharacterized protein n=1 Tax=Thermotalea metallivorans TaxID=520762 RepID=A0A140KZ97_9CLOT)

HSP 1 Score: 55.8 bits (133), Expect = 9.530e-10
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC 105
            MAKA     TDAE RKRGE+TG +TLVVHAVNDEC
Sbjct:    1 MAKATYWTVTDAEARKRGEQTGLDTLVVHAVNDEC 35
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: S4WA34_9BACT (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=S4WA34_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.280e-9
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDE 102
            MAKA    + DAEGRKRGERTG +TLVVHAVNDE
Sbjct:    1 MAKAAFWHNIDAEGRKRGERTGLDTLVVHAVNDE 34
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A6A5L082_LUPAL (Uncharacterized protein n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L082_LUPAL)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-9
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC 105
            +AKA    DTDAE RKRGE+TG +TLVVHAVNDEC
Sbjct:   36 VAKAANWSDTDAEARKRGEQTGLDTLVVHAVNDEC 70
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A6A5LEE3_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5LEE3_LUPAL)

HSP 1 Score: 57.0 bits (136), Expect = 9.150e-9
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC 105
            +AKA    DTDAE RKRGE+TG +TLVVHAVNDEC
Sbjct:  142 VAKAANWSDTDAEARKRGEQTGLDTLVVHAVNDEC 176
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A645EPB2_9ZZZZ (Uncharacterized protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645EPB2_9ZZZZ)

HSP 1 Score: 53.1 bits (126), Expect = 1.120e-8
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC 105
            MAKA      DAE RKRGE+TG +TLVVHAVNDEC
Sbjct:    1 MAKAATWTGIDAEVRKRGEQTGLDTLVVHAVNDEC 35
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BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Match: A0A0J8DU53_BETVV (Uncharacterized protein n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8DU53_BETVV)

HSP 1 Score: 54.3 bits (129), Expect = 1.350e-8
Identity = 24/33 (72.73%), Postives = 25/33 (75.76%), Query Frame = -3 
Query:    2 HH*QRGLPGSQILFAPHAFVPQRQYRTRESPSP 100
            H  +RGLPG  ILFAPHAF PQRQYR  E PSP
Sbjct:   19 HRLRRGLPGYLILFAPHAFAPQRQYRASEPPSP 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1321.2014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V8M0T5_STRTR4.020e-1180.00Uncharacterized protein n=2 Tax=Bacilli TaxID=9106... [more]
A0A381MYC0_9ZZZZ7.050e-1179.41Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A0D6B8G7_RHOSU2.250e-1077.14Uncharacterized protein n=2 Tax=Rhodobacteraceae T... [more]
A0A0F9VZV7_9ZZZZ2.250e-1077.14Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A140KZ97_9CLOT9.530e-1074.29Uncharacterized protein n=1 Tax=Thermotalea metall... [more]
S4WA34_9BACT1.280e-976.47Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A6A5L082_LUPAL1.480e-974.29Uncharacterized protein n=2 Tax=Lupinus albus TaxI... [more]
A0A6A5LEE3_LUPAL9.150e-974.29Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A645EPB2_9ZZZZ1.120e-871.43Uncharacterized protein n=1 Tax=bioreactor metagen... [more]
A0A0J8DU53_BETVV1.350e-872.73Uncharacterized protein n=1 Tax=Beta vulgaris subs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1321contigH-paniculata_contig1321:27258..27362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929046.604065-CDS-H-paniculata_contig1321:27257..273621622929046.604065-CDS-H-paniculata_contig1321:27257..27362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1321 27258..27362 -
1691480711.047054-CDS-H-paniculata_contig1321:27257..273621691480711.047054-CDS-H-paniculata_contig1321:27257..27362Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1321 27258..27362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1321.2014.1prot_H-paniculata_contig1321.2014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1321 27258..27362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1321.2014.1

>prot_H-paniculata_contig1321.2014.1 ID=prot_H-paniculata_contig1321.2014.1|Name=mRNA_H-paniculata_contig1321.2014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
MAKAILLFDTDAEGRKRGERTGFETLVVHAVNDEC
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mRNA from alignment at H-paniculata_contig1321:27258..27362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1321.2014.1 ID=mRNA_H-paniculata_contig1321.2014.1|Name=mRNA_H-paniculata_contig1321.2014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=105bp|location=Sequence derived from alignment at H-paniculata_contig1321:27258..27362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGCGATTCTCTTGTTCGATACTGACGCTGAGGGACGAAAGCG
TGGGGAGCGAACAGGATTTGAGACCCTGGTAGTCCACGCTGTCAATGATG
AGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1321:27258..27362-

>mRNA_H-paniculata_contig1321.2014.1 ID=mRNA_H-paniculata_contig1321.2014.1|Name=mRNA_H-paniculata_contig1321.2014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig1321:27258..27362- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAGGCGATTCTCTTGTTCGATACTGACGCTGAGGGACGAAAGCG
TGGGGAGCGAACAGGATTTGAGACCCTGGTAGTCCACGCTGTCAATGATG
AGTGTATGGCGAAGGCGATTCTCTTGTTCGATACTGACGCTGAGGGACGA
AAGCGTGGGGAGCGAACAGGATTTGAGACCCTGGTAGTCCACGCTGTCAA
TGATGAGTGT
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