mRNA_H-paniculata_contig13207.2012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig13207.2012.1
Unique NamemRNA_H-paniculata_contig13207.2012.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig13207.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig13207contigH-paniculata_contig13207:5328..5549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929046.321538-CDS-H-paniculata_contig13207:5327..55491622929046.321538-CDS-H-paniculata_contig13207:5327..5549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13207 5328..5549 +
1691480710.9490528-CDS-H-paniculata_contig13207:5327..55491691480710.9490528-CDS-H-paniculata_contig13207:5327..5549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig13207 5328..5549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig13207.2012.1prot_H-paniculata_contig13207.2012.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig13207 5328..5549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig13207.2012.1

>prot_H-paniculata_contig13207.2012.1 ID=prot_H-paniculata_contig13207.2012.1|Name=mRNA_H-paniculata_contig13207.2012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
AIYATRIGSLLHILHVAVTSGMEMECFMGTLATGSWHQWPHQHLVALLGS
VWYNSSGRDSSNIGLSQMQGLGFA
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mRNA from alignment at H-paniculata_contig13207:5328..5549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig13207.2012.1 ID=mRNA_H-paniculata_contig13207.2012.1|Name=mRNA_H-paniculata_contig13207.2012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig13207:5328..5549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATCTATGCAACACGCATCGGTAGTCTCCTGCATATCCTCCACGTCGC
CGTGACGTCAGGGATGGAGATGGAGTGCTTCATGGGCACCCTTGCCACCG
GATCTTGGCATCAGTGGCCGCATCAACATCTTGTAGCGTTGCTTGGTTCT
GTCTGGTACAATAGCAGTGGAAGGGACTCTTCAAATATCGGATTGTCTCA
GATGCAGGGGTTGGGTTTCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig13207:5328..5549+

>mRNA_H-paniculata_contig13207.2012.1 ID=mRNA_H-paniculata_contig13207.2012.1|Name=mRNA_H-paniculata_contig13207.2012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig13207:5328..5549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATCTATGCAACACGCATCGGTAGTCTCCTGCATATCCTCCACGTCGC
CGTGACGTCAGGGATGGAGATGGAGTGCTTCATGGGCACCCTTGCCACCG
GATCTTGGCATCAGTGGCCGCATCAACATCTTGTAGCGTTGCTTGGTTCT
GTCTGGTACAATAGCAGTGGAAGGGACTCTTCAAATATCGGATTGTCTCA
GATGCAGGGGTTGGGTTTCGCAGCCATCTATGCAACACGCATCGGTAGTC
TCCTGCATATCCTCCACGTCGCCGTGACGTCAGGGATGGAGATGGAGTGC
TTCATGGGCACCCTTGCCACCGGATCTTGGCATCAGTGGCCGCATCAACA
TCTTGTAGCGTTGCTTGGTTCTGTCTGGTACAATAGCAGTGGAAGGGACT
CTTCAAATATCGGATTGTCTCAGATGCAGGGGTTGGGTTTCGCA
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